Sexual segregation in habitat use by elephants in Chobe National Park, Botswana

We report on a study conducted on free‐ranging African elephants in the woodlands of northern Botswana. We compared bull groups and family units with regard to (1) their patterns of habitat use and (2) their ranging distances from perennial water sources. During the dry season, adult males frequented more habitat types than family units, whereas family units used a wider diversity of habitats than bulls during the wet season. Bulls roamed widely (>10 km) from perennial drinking water in the dry season, when family units congregated within 3.5 km of the rivers. During the wet season, when ephemeral pans were abundant, all elephant groups were found at intermediate distances (5 km) from the rivers. The spacing of elephants in the dry season is consistent with sexual segregation but we reject the hypothesis that this is an outcome of indirect competition for food, because our concurrent studies on elephant feeding ecology found no evidence for intraspecific competition. Instead, we propose that most adult male elephants space themselves to avoid conflict with musth bulls and roam widely in the dry season between discretely distributed feeding ‘hotspots’. The small proportion of males that are in musth remain close to family units to maximize mating opportunities, and family units are unable to range far from water in the dry season. This is due to (1) comparatively high rates of water turn‐over among juveniles and lactating cows and (2) the reduced mobility of neonates.     

Heat inactivation of staphylococcus epidermidis at various water activities.

Members of the family Micrococcaceae play an important role in food spoilage and even in food poisoning. In contrast to members of the family Enterobacteriaceae, these bacteria can grow in media with low water activities. Therefore, the heat resistance of Staphylococcus epidermidis, a rather resistant member of the family Micrococcaceae, was studied at water activities between 0.87 and 1.00. The heat inactivation curves were clearly biphasic at all temperatures and water activities tested. Especially at low water activities, the D-values of the tail phase were extremely high (at 0.87 water activity, a D-value at 70 degrees C of 500 s was recorded).     

Water scorpions (Heteroptera, Nepidae) and giant water bugs (Heteroptera, Belostomatidae): sources of new members of the adipokinetic hormone/red pigment-concentrating hormone family

Two novel octapeptide members of the AKH/RPCH family have been identified from the corpora cardiaca (CC) of two species of water bugs. The giant water bug Lethocerus indicus (family: Belostomatidae) contains a peptide code-named Letin-AKH with the sequence pGlu-Val-Asn-Phe-Ser-Pro-Tyr-Trp amide, and the water scorpion Nepa cinerea (family: Nepidae) has the peptide code-named Nepci-AKH with the sequence pGlu-Leu/Ile-Asn-Phe-Ser-Ser-Gly-Trp amide. The sequences were deduced from the multiple MS(N) electrospray mass data from crude CC extracts. Synthetic peptides were made and co-elution on reversed-phase high performance liquid chromatography (RP-HPLC) with the natural peptide from crude gland extract confirmed the accuracy of the deduced sequence for Letin-AKH and demonstrated that Nepci-AKH contains a Leu residue at position 2 and not an Ile residue. A previously characterized member of the AKH/RPCH family was identified in the stick water scorpion Ranatra linearis by mass spectrometry: Grybi-AKH (pGlu-Val-Asn-Phe-Ser-Thr-Gly-Trp amide) has the same mass (919 Da) as Nepci-AKH and differs in two positions from Nepci-AKH (residues 2 and 6). The apparent function of the peptides is to achieve lipid mobilization in the species under investigation; indications for this came from conspecific bioassays using the appropriate synthetic peptides for injecting into the insects. This function is very likely linked to dispersal flight metabolism of water bugs. Swimming activity in N. cinerea also results in an increase in lipid concentration in the hemolymph.     

Selectivity and conductance among the glycerol and water conducting aquaporin family of channels

The atomic structures of a transmembrane water plus glycerol conducting channel (GlpF), and now of aquaporin Z (AqpZ) from the same species, Escherichia coli, bring the total to three atomic resolution structures in the aquaporin (AQP) family. Members of the AQP family each assemble as tetramers of four channels. Common helical axes support a wider channel in the glycerol plus water channel paradigm, GlpF. Water molecules form a single hydrogen bonded file throughout the 28 A long channel in AqpZ. The basis for absolute exclusion of proton or hydronium ion conductance through the line of water is explored using simulations.     

The structure of aquaporins

The ubiquitous members of the aquaporin (AQP) family form transmembrane pores that are either exclusive for water (aquaporins) or are also permeable for other small neutral solutes such as glycerol (aquaglyceroporins). The purpose of this review is to provide an overview of our current knowledge of AQP structures and to describe the structural features that define the function of these membrane pores. The review will discuss the mechanisms governing water conduction, proton exclusion and substrate specificity, and how the pore permeability is regulated in different members of the AQP family.     

Metagenomic analysis of viruses in reclaimed water

Reclaimed water use is an important component of sustainable water resource management. However, there are concerns regarding pathogen transport through this alternative water supply. This study characterized the viral community found in reclaimed water and compared it with viruses in potable water. Reclaimed water contained 1000-fold more virus-like particles than potable water, having approximately 10⁸ VLPs per millilitre. Metagenomic analyses revealed that most of the viruses in both reclaimed and potable water were novel. Bacteriophages dominated the DNA viral community in both reclaimed and potable water, but reclaimed water had a distinct phage community based on phage family distributions and host representation within each family. Eukaryotic viruses similar to plant pathogens and invertebrate picornaviruses dominated RNA metagenomic libraries. Established human pathogens were not detected in reclaimed water viral metagenomes, which contained a wealth of novel single-stranded DNA and RNA viruses related to plant, animal and insect viruses. Therefore, reclaimed water may play a role in the dissemination of highly stable viruses. Information regarding viruses present in reclaimed water but not in potable water can be used to identify new bioindicators of water quality. Future studies will need to investigate the infectivity and host range of these viruses to evaluate the impacts of reclaimed water use on human and ecosystem health.     

Dimerization and DNA-binding of ASR1, a small hydrophilic protein abundant in plant tissues suffering from water loss

The Asr gene family is present in Spermatophyta. Its members are generally activated under water stress. We present evidence that tomato ASR1, one of the proteins of the family, accumulates in seed during late stages of embryogenesis, a physiological process characterized by water loss. In vitro, electrophoretic assays show a homo-dimeric structure for ASR1 and highlight strong non-covalent interactions between monomers prone to self-assemble. Direct visualization of single molecules by atomic force microscopy (AFM) confirms that ASR1 forms homodimers and that uncovers both monomers and dimers bind double stranded DNA.     

Rapid aquaporin translocation regulates cellular water flow: mechanism of hypotonicity-induced subcellular localization of aquaporin 1 water channel

The control of cellular water flow is mediated by the aquaporin (AQP) family of membrane proteins. The structural features of the family and the mechanism of selective water passage through the AQP pore are established, but there remains a gap in our knowledge of how water transport is regulated. Two broad possibilities exist. One is controlling the passage of water through the AQP pore, but this only has been observed as a phenomenon in some plant and microbial AQPs. An alternative is controlling the number of AQPs in the cell membrane. Here, we describe a novel pathway in mammalian cells whereby a hypotonic stimulus directly induces intracellular calcium elevations through transient receptor potential channels, which trigger AQP1 translocation. This translocation, which has a direct role in cell volume regulation, occurs within 30 s and is dependent on calmodulin activation and phosphorylation of AQP1 at two threonine residues by protein kinase C. This direct mechanism provides a rationale for the changes in water transport that are required in response to constantly changing local cellular water availability. Moreover, because calcium is a pluripotent and ubiquitous second messenger in biological systems, the discovery of its role in the regulation of AQP translocation has ramifications for diverse physiological and pathophysiological processes, as well as providing an explanation for the rapid regulation of water flow that is necessary for cell homeostasis.     

安徽喜沼螨科一新属新种（蜱螨亚纲：皱喙螨总科）

记述了安徽黄山的喜沼螨科Limnocharidae, 喜沼螨亚科Limnocharinae的一新属侧喜沼螨属、一新种黄山侧喜沼螨Laterolimnochares huangshanensis gen. Nov.,sp. Nov.,该科及亚科的中国区系过去仅由Uchida于1941年简录过东北之一种。文中给出了喜沼螨亚科的属检索表;详述了新种腺毛分布体位。     

Adaptive strategy of the Porcellanasterid sea stars

Morphological–functional analysis suggests that the adaptations of sea stars of the family Porcellanasteridae to burrowing and deposit feeding are related to morphological simplification. This simplification led to reduction of the morphological structures responsible for respiration (papulae and paxillae), decrease in the number of cribriform organs, reduction of body size, and retention of juvenile characters by adults. The forced-circulation water system inside the burrow also changes. The water generated by the cribriform organs becomes upwardly directed. The adaptive strategy in the family is characterized by intensification of nonselective deposit feeding by means of active moving within the muddy sediment and removal of fecal materials from the burrow.     

Buried water in homologous serine proteases.

Buried water molecules in the structurally homologous family of eukaryotic serine proteases were examined to determine whether buried waters and their protein environments are conserved in these proteins. We found 16 equivalent water sites conserved in trypsin/ogen, chymotrypsin/ogen, elastase, kallikrein, thrombin, rat tonin and rat mast cell protease, and 5 additional water sites in enzymes which share the primary specificity of trypsin. Based on an alignment of 30 serine protease sequences, it appears that the protein environments of these 21 conserved buried waters are highly conserved. The protein environments of buried waters are comprised primarily of atoms from highly conserved residues or main chain atoms from nonconserved residues. In one instance, the protein environment of a water is conserved even in the presence of an unlikely Pro/Ala substitution. We also note 3 instances in which a histidine side chain substitutes for water, suggesting that the structural role of water at these sites is satisfied by the presence of an alternative hydrogen bonding partner. Buried waters appear to be integral structural components of these proteins and should be incorporated into protein structures predicted on the basis of sequence homology to this family, including the catalytic domains of coagulation proteases.     

Impacts of land use and water quality on macroinvertebrate communities in the Pearl River drainage basin,China

The East River (Dong Jiang), a major tributary of the Pearl River (Zhu Jiang, the second largest river in China by discharge), is situated in southern China, which has the highest rates of urbanization and development on Earth. The East River also provides 80% of Hong Kong’s water supply. However, there have been no ecological studies to examine the combined impacts of changes in land use and water quality degradation on this river ecosystem. We tested the hypothesis that land-use disturbance and water quality degradation would significantly reduce benthic biodiversity in the East River by investigating macroinvertebrate community composition and relating it to data on water quality and catchment condition. The percentage of total impervious area within each catchment (%TIA—an indicator of land-use disturbance) was negatively related to a composite water quality index—the ERWQI—we developed for the East River. Modeling by partial least squares projection to latent structures (PLS) showed that family richness and relative abundance index (RAI) of macroinvertebrates were strongly influenced by both %TIA and ERWQI. Multi-response permutation procedure (MRPP) tests showed highly significant differences in family richness composition and RAI of macroinvertebrates among sites in the upper, middle, and lower course of the East River. MRPP also revealed differences in the family richness composition of nighttime drift samples between upper and middle site groups. Abundance (individuals m⁻³) and total family richness of drifting macroinvertebrates at each site were positively related to %TIA (range: 1.0–8.5%), while drift biomass was negatively related to dissolved oxygen and positively related to total suspended solids. Thus, human disturbances associated with land-use changes (increasing %TIA) and nutrient inputs severely degraded ecosystem integrity and the water quality of the East River and thereby reduced aquatic biodiversity.     

拟南芥转录因子GRAS 家族基因群响应渗透和干旱胁迫的初步探索

GRAS家族是一类植物特有的转录调控因子, 已有报道表明该家族基因在植物生长发育和光信号转导过程中具有重要作用。目前在拟南芥(Arabidopsis thaliana)基因组中已鉴定了33个GRAS家族基因。利用功能基因组学和生物信息学手段,通过基因芯片数据挖掘和基因功能预测, 对拟南芥GRAS家族基因在渗透和干旱胁迫过程中的应答模式进行了初步探索, 提出了一类响应渗透胁迫和干旱胁迫的拟南芥GRAS家族基因。以SCL13为例, 利用基因芯片相关性和GO分析, 对其在渗透胁迫信号转导过程中可能的调控机制进行了预测和分析。这一研究将为阐明GRAS家族基因参与水分胁迫的分子机制提供新的思路, 同时也为植物抗逆分子育种提供候选基因。     

Study of the active site residues of a glycoside hydrolase family 8 xylanase

Site-directed mutagenesis and a comparative characterisation of the kinetic parameters, pH dependency of activity and thermal stability of mutant and wild-type enzymes have been used in association with crystallographic analysis to delineate the functions of several active site residues in a novel glycoside hydrolase family 8 xylanase. Each of the residues investigated plays an essential role in this enzyme: E78 as the general acid, D281 as the general base and in orientating the nucleophilic water molecule, Y203 in maintaining the position of the nucleophilic water molecule and in structural integrity and D144 in sugar ring distortion and transition state stabilization. Interestingly, although crystal structure analyses and the pH-activity profiles clearly identify the functions of E78 and D281, substitution of these residues with their amide derivatives results in only a 250-fold and 700-fold reduction in their apparent k(cat) values, respectively. This, in addition to the observation that the proposed general base is not conserved in all glycoside hydrolase family 8 enzymes, indicates that the mechanistic architecture in this family of inverting enzymes is more complex than is conventionally believed and points to a diversity in the identity of the mechanistically important residues as well as in the arrangement of the intricate microenvironment of the active site among members of this family.     

Phylogenetic position of a deep-sea ascidian, Megalodicopia hians, inferred from the molecular data

Ascidians inhabit both shallow water and the deep sea. The phylogenetic position of deep-sea ascidians has not been sufficiently investigated because of their unusual habitats. The family Octacnemidae is one such enigmatic deep-sea ascidian. In this report, we determined the sequences of the 18SrDNA and a mitochondrial protein gene of Megalodicopia hians belonging to the family Octacnemidae, and we analyzed its phylogenetic relationship with other ascidians. A phylogenetic relationship of this family with the families Cionidae and/or Corellidae has been suspected based on a small number of morphological characteristics. However, our results suggested that M. hians has a close relationship to the family Corellidae and might originate from them. This is the first report of the molecular phylogenetic analysis of a deep-sea ascidian.     

Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262)

Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of the tree of life. Strain RW262(T) forms a monophyletic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na(+) ions. All other genera in the family Cryomorphaceae are from marine habitats and have an absolute requirement for Na(+) ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.     

养分与水分添加对荒漠草地植物群落结构和物种多样性的影响

为进一步了解养分添加和水分添加对干旱区草地植物多样性的影响, 2009-2011年5月15日, 对准噶尔盆地荒漠草地进行养分和水分添加, 2009-2012年5月25日进行植被调查, 研究群落结构与植物多样性对养分N、P、K与水分(雨、雪)添加的响应, 得出以下结果: (1)添加肥、水后, 荒漠草地植物群落结构发生了变化, 物种数由肥、水添加前的17种减少到添加后的11种, 减少了35.3%, 禾草类植物数目增加, 十字花科植物数量下降; (2)通过裂区试验方差分析, 2009年和2010年, 养分主效应对物种丰富度、Simpson指数、Shannon-Wiener指数、Pielou均匀度指数的影响不显著, 水分主效应和肥水交互作用对以上4个植物多样性指数的影响也不显著; (3) 2012年, 养分主效应对物种丰富度影响显著(p < 0.05), 养分添加降低了荒漠草地物种丰富度, 而水分作用、肥水交互作用对物种丰富度的影响均不显著; 肥水交互作用对植物Simpson指数、Shannon-Wiener指数的影响显著(p < 0.05), 而养分添加、水分添加对其影响亦不显著; (4)荒漠草地植物的Simpson指数、Shannon-Wiener指数、Pielou均匀度指数在年际间呈上升趋势。     

Strategies for improving water use efficiency of livestock production in rain-fed systems

Livestock production is a major consumer of fresh water, and the influence of livestock production on global fresh water resources is increasing because of the growing demand for livestock products. Increasing water use efficiency of livestock production, therefore, can contribute to the overall water use efficiency of agriculture. Previous studies have reported significant variation in livestock water productivity (LWP) within and among farming systems. Underlying causes of this variation in LWP require further investigation. The objective of this paper was to identify the factors that explain the variation in LWP within and among farming systems in Ethiopia. We quantified LWP for various farms in mixed-crop livestock systems and explored the effect of household demographic characteristics and farm assets on LWP using ANOVA and multilevel mixed-effect linear regression. We focused on water used to cultivate feeds on privately owned agricultural lands. There was a difference in LWP among farming systems and wealth categories. Better-off households followed by medium households had the highest LWP, whereas poor households had the lowest LWP. The variation in LWP among wealth categories could be explained by the differences in the ownership of livestock and availability of family labor. Regression results showed that the age of the household head, the size of the livestock holding and availability of family labor affected LWP positively. The results suggest that water use efficiency could be improved by alleviating resource constraints such as access to farm labor and livestock assets, oxen in particular.     

Root niche partitioning between shallow rooted succulents in a South African semi desert: implications for diversity

With a high percentage of endemics along the west coast of South Africa, especially in the family Aizoaceae, the region is considered one of the earth’s biodiversity hot spots. It has been suggested that the diversity and radiation of the Aizoaceae are coincident with low but predictable rainfall and lack of competition between species. In this study we examine the relationship between water source and the efficiency of PSII photochemistry for representative Aizoaceae and non-Aizoaceae. We do this to determine the extent to which the different genera are adapted to the frequent, low volume, precipitation characteristic of the region and to ascertain the extent to which there is competition for water. Our water isotope results show that the Aizoaceae use shallow surface water while the non-Aizoaceae use a deeper water source. We are however not able to show the extent to which the Aizoaceae utilize fog or dew. Our chlorophyll fluorescence results show that there are no differences in efficiency of PSII photochemistry between the species in the wet season. The decline from wet to dry season for the Aizoaceae is, however, more dramatic than that of the non-Aizoaceae reflecting the differences in rooting depth between the different families. These results suggest that, during the dry season, there is no competition for resources between families but there is competition between species. We conclude that the adaptation to using shallow water, coupled with susceptibility to drought of adult short lived Aizoaceae may be a, mechanism for the diversification of this family.     

中国雄尾螨属一新种及一已知种重描述（蜱螨亚纲：雄尾螨科）

本文记述采自我国湖南的雄尾螨属一新种：凹背雄尾螨，新种Ａｒｒｅｎｕｒｕｓ ｃｕｒｖｉｄｏｒｓａｌｉｓ ｓｐ．ｎｏｖ．。新种以背板前端极度向体内塌陷等为显著特征。另对鱼尾雄尾螨Ａｒｒｅｎｕｒｕｓ ｐｉｓｃｉｓｃａｕｄａｐｅｔｉｏｌａｔｕｓ Ｍａｒｓｈａｌｌ１９２８作了全面的再记述，其鉴定标本采自湖南、湖北。