濒危植物元宝山冷杉的遗传多样性研究

元宝山冷杉(Abies yuanbaoshanensis)是仅分布于广西融水县元宝山的珍稀濒危物种。本研究采用AFLP分子标记分析了元宝山冷杉种群的遗传多样性。取元宝山冷杉种群43棵植株作为研究材料,4对引物组合用于AFLP扩增,共得到261条DNA扩增带。分析结果：元宝山冷杉种群的多态位点百分比率为50．96％,Nei's基因多样性为0．1510,Shannon多样性指数为0．1735。用NTSYS软件计算各个样品间的相似性系数,并用UPGMA法基于相似性系数进行了聚类分析。研究结果表明：元宝山冷杉种群的遗传多样性水平低,种群内个体间的相似性系数很大,无明显亚种群间的遗传分化。要保护或保存这个物种的遗传资源,建议应该选择种群内尽可能多的个体进行保护。     

元宝山冷杉群落主要树木种群间联结关系的研究

元宝山冷杉 (Ａｂｉｅｓｙｕａｎｂａｏｓｈａｎｅｎｓｉｓ)是广西特有的珍稀濒危植物 ,为古老的残遗物种 ,它对研究我国古代植物区系的发生和演变 ,以及古气候、古地理 ,特别是对第四纪冰期气候的探讨有学术价值[6] 。元宝山冷杉仅分布于广西北部融水县的元宝山蓝坪峰一带 ,种群个体数量不足 90 0株 ,天然更新不良 ,多为老树及幼树、幼苗 ,罕见青壮年个体。研究元宝山冷杉群落主要树木种群间的联结关系 ,对于研究种群间的相互作用 ,群落的组成和动态 ,阐明种群生态学以及进一步保护好元宝山冷杉 ,保存物种多样性 ,具有重要的现实意义。1　…     

甘南高山林线岷江冷杉—杜鹃种群结构与动态

高山林线是一种典型的生态交错带,是对气候反映最敏感的地区之一。甘肃南部高山林线区域主要以原始岷江冷杉种群和杜鹃种群为优势种,通过对岷江冷杉和杜鹃种群建立静态生命表,绘制存活曲线描述其结构特征,利用种群数量动态预测时间序列分析定量研究未来的发展趋势。结果显示:(1)岷江冷杉种群幼苗比较丰富,能很好的维持种群个体的自疏死亡,存活曲线呈Deevey-Ⅲ型;杜鹃种群幼苗缺乏,存活曲线趋向于Deevey-Ⅰ型;死亡曲线和危险率曲线都随着龄级的增加而增加,杜鹃种群的死亡率在各个龄级一直大于岷江冷杉种群,危险率在Ⅱ龄级以后杜鹃种群也始终大于岷江冷杉种群。(2)岷江冷杉种群结构动态变化指数Vpi大于修正后的种群结构动态变化指数V′pi且大于0,而杜鹃种群结构动态变化指数Vpi小于修正后的种群结构动态变化指数V′pi且小于0,则岷江冷杉种群属于增长型,杜鹃种群属于衰退型,岷江冷杉、杜鹃随机干扰极大值分别为0.027、0.011,说明二者对外界干扰均比较敏感。(3)杜鹃种群时间序列预测为前期幼苗比较缺乏,中期稳定,后期衰退的动态特征,而岷江冷杉种群表现出各龄级时间变化较小,幼苗个体数较多,种群为稳定增长型,岷江冷杉更能适应甘肃南部高山林线区域当前环境。     

岷江上游林线附近岷江冷杉种群的生存分析

岷江冷杉 (Abiesfaxoniana) 林是青藏高原东南缘亚高山暗针叶林的主要类型之一, 在岷江上游地区, 岷江冷杉林一般在 2 80 0~ 380 0m之间呈带状分布并且在阴坡形成林线。为了对岷江上游林线地段的岷江冷杉种群进行生存分析, 在岷江上游林线附近弓杠岭 (33°0 2′39″N, 10 3°4 3′11″E) 设置了 10个样地, 使用侧生轮枝计数或WinDENDRO系统对个体年龄进行确定。调查数据经匀滑技术处理, 编制了岷江冷杉种群特定时间生命表, 绘制了岷江冷杉种群的存活曲线、死亡率曲线和消失率曲线。结果表明:1) 岷江上游林线地段岷江冷杉种群存活曲线趋于Deevey_Ⅲ型。 2) 林线地段岷江冷杉种群生存率呈单调下降趋势, 生存率下降趋势前期高于后期, 说明岷江冷杉种群幼苗死亡率高, 种群后期比较稳定。3) 林线地段岷江冷杉林整个生长期中出现了两个死亡高峰期, 一个出现在幼苗向幼树过渡时期 (0~ 4 0年), 另一个出现在中龄时期 (180年) 。岷江上游林线地段岷江冷杉种群幼苗死亡率较高的原因可能和林线地段的温度较低、积雪厚度、风向、水分等环境条件有关。     

基于nrDNA GapC基因内含子序列的资源冷杉遗传多样性研究

通过nrDNA GapC基因内含子序列的测序和分析,揭示资源冷杉遗传多样性水平和种群分化的强弱并推断其进化历史。资源冷杉3个种群的34个个体共获得70条GapC基因内含子序列,有8个核苷酸变异位点,鉴别出12种单倍型。银竹老山、大院和舜黄山种群分别有10种、6种和7种单倍型;有7个个体得到了2种以上的单倍型。资源冷杉物种水平的单倍型多样性（h）为0.817 0,种群的在0.683 3～0.883 1之间;物种水平的核苷酸多样性（π）为0.003 90,种群的在0.002 63～0.003 82之间。种群遗传分化研究结果（G_st=0.103,p<0.05）说明种群间存在显著的遗传分化,分子方差分析（AMOVA）结果也证明虽然大多数的核苷酸多态性（88.64％,p<0.001）来源于种群内个体间的变异,但是仍有显著性比例存在种群间（11.36%,p<0.05）。Tajima’s D、Fu &; Li’s D、Fu &; Li’s Fs中性检验结果都表明资源冷杉在物种和种群水平上都不拒绝中性进化。资源冷杉单倍型的谱系没有出现地区特异性谱系分支,核苷酸不配对分析（mismatch analysis）结果表明没有发生近期的群体扩张,资源冷杉的N_st（0.131）与G_st（0.103）没有显著性差异（p>0.05）,表明种群没有明显的地理结构。推测现存资源冷杉是相对较近的时间内片断化的产物。     

濒危植物元宝山冷杉种群生命表分析

应用相邻格子法对元宝山冷杉种群进行野外调查,编制种群的静态生命表;根据试验结果编制幼苗期动态生命表。结果表明：元宝山冷杉种群结构存在明显的周期性和波动,出现多个死亡高峰,个体胸径超过18cm后,期望寿命陡降,存活曲线趋于Deevey-Ⅲ型;一年生幼苗死亡率高达48％。     

濒危植物梵净山冷杉野生种群结构及动态特征

梵净山冷杉(Abies fanjingshanensis)是国家一级保护植物,是中国贵州特有的珍稀濒危植物.通过实地踏查在梵净山冷杉主要分布地选取2个斑块,调查分析其种群年龄结构特征,量化确定种群结构类型,并运用时间序列模型预测种群数量动态,对比不同生境下的异同点,以揭示梵净山冷杉的种群结构及动态特征.结果表明:(1)梵净山冷杉种群属于增长型,Vpt′=0.005 9,表明该种群趋近于稳定型;种群结构在发展过程中存在一定的波动性,种群生长前期个体数多于生长后期;存活曲线趋于Deevey-Ⅲ型;幼苗不足和幼树、小树的死亡率高是种群濒危的重要原因.(2)时间序列预测分析表明,梵净山冷杉种群具备一定的恢复能力,未来2、4和6个龄级时间后种群个体数均呈现小幅度的增加趋势.(3)不同生境条件下,种群结构差异不大,生境一的种群结构增长性略大于生境二.     

资源冷杉与元宝山冷杉针叶精油成分的比较

为比较极小种群野生植物资源冷杉(Abies ziyuanensis)和元宝山冷杉(A. yuanbaoshanensis)针叶精油化学组成成分,该文利用水蒸气蒸馏法提取资源冷杉和元宝山冷杉针叶精油,采用GC-MS分析确定其精油化学物质成分,并基于峰面积归一化法计算各组分相对含量。结果表明:分别从资源冷杉和元宝山冷杉针叶精油中鉴定出化学物质21种和22种,其中15种为两种冷杉共有成分;烯烃类物质是资源冷杉和元宝山冷杉针叶精油中含量最高的组分,占比分别为95.94%和95.02%。两种冷杉共有成分中β-蒎烯、1-石竹烯、莰烯、α-石竹烯和异松油烯具有较大开发利用价值;非共有成分方面,资源冷杉中α-松油醇和α-蒎烯以及元宝山冷杉中α-依兰油烯和叶醇均具有较大开发利用价值。以上结果为开发利用两种冷杉针叶精油提供了理论依据。     

我国南部5种冷杉植物木材的比较解剖学研究

应用光学显微镜和扫描电子显微镜对分布于我国南部的5种冷杉属(Abies)植物,即资源冷杉(A．ziyuanensis)、大院冷杉(A.dayuanensis)、梵净山冷杉(A.fanjingshanensis)、元宝山冷杉(A.yuanbaoshanensis)和台湾冷杉(Akawakamii)的木材结构进行了研究。从管胞分子长度、管胞分子直径、射线高度、射线频率、纹孔类型、交叉场纹孔类型、交又场纹孔数目等方面,比较了它们木材解剖特征的差异。结果表明：大院冷杉和资源冷杉在射线频率、管胞直径、管胞长度、交叉场纹孔数目方面都很类似;元宝山冷杉在管胞直径与射线长度方面与其它冷杉有显著差异。在纹孔类型、交叉场纹孔类型方面,几种冷杉都是一致的。在交叉场纹孔数目方面,大院冷杉、资源冷杉较少,而梵净山冷杉、元宝山冷杉和台湾冷杉较多。我国南部这5种冷杉的木材解剖特征与分布在华北、东北及青藏高原上冷杉的木材非常类似。为了便于区别这5种木材,根据木材解剖特征编制了检索表。     

濒危植物百山祖冷杉和资源冷杉的物种划分及其遗传资源的保护

物种是生物学中最基本的分类单元,对于珍稀濒危物种而言,物种的正确界定对于制定保护措施至关重要。分布于中国亚热带地区的百山祖冷杉(Abies beshanzuensis)、资源冷杉(A. ziyuanensis)和大院冷杉(A. dayuanensis)种群极小,且分类上长期存在争议。现行分类依据形态和地理分布将大院冷杉归并到资源冷杉,又将资源冷杉处理为百山祖冷杉的变种,但分子证据不足。该研究对百山祖冷杉、资源冷杉和大院冷杉分布区内8个种群的23株个体进行靶向捕获测序,获得了60个单拷贝核基因中的805个单核苷酸多态性位点。种群遗传结构和历史动态分析表明,这些个体可分为两个谱系,分别对应于百山祖冷杉和资源冷杉,其中资源冷杉在2.35Ma前与百山祖冷杉和大院冷杉的共同祖先分化,而大院冷杉与百山祖冷杉亲缘关系更近,形成一个谱系。百山祖冷杉、资源冷杉和大院冷杉的遗传多样性水平整体较低,种群间存在较为明显的遗传分化(遗传分化指数0.083–0.208)。由于未检测到分化后的谱系间遗传交流,推测分布区的碎片化是谱系间遗传交流受阻进而产生分化的主要原因。生态位比较分析结果显示百山祖冷杉、资源冷杉和大...     

广东省猴耳环遗传多样性研究

为了解猴耳环(Archidendron clypearia)种质资源的遗传多样性,以广东省12个野生猴耳环群体的146份种质资源为材料,采用SSR分子标记技术对其遗传多样性和亲缘关系进行分析.结果表明,21对SSR引物共检测到249个等位基因,平均每对SSR引物检测的等位基因数(Na)为11.857,有效等位基因数(N...     

Genetic diversity and differentiation of the endangered Japanese endemic tree Magnolia stellata using nuclear and chloroplast microsatellite markers

Genetic diversity and differentiation were analyzed in 11 populations of Magnolia stellata (Sieb. and Zucc.) Maxim. (Magnoliaceae) in the Tokai district, Japan. Variation at four nuclear microsatellite (nSSR) loci was examined, three chloroplast microsatellite (cpSSR) markers were developed and 13 haplotypes identified. The 11 populations were divided into three groups (A, B and C). Each population within the group was separated less than 40 km. Group B harbored the highest gene diversity (H) and allelic richness (Ar) for nSSR (H=0.74 and Ar=8.02). Group C had the highest diversity of chloroplast haplotypes (H=0.79 and Ar=6.8): 2.5 times more haplotypes than the other groups. Each population contributed differently to the total diversity, with respect to nSSR and cpSSR. AMOVA revealed that 58% of haplotypic and 15% of nSSR variation was partitioned among populations within groups. A Mantel test revealed significant correlations between population pairwise geographic ln(distance) and F_ST/(1−F_ST) for both nSSR (r=0.479; P=0.001) and cpSSR (r=0.230; P=0.040). Dendrograms of populations for nSSR, based on Nei’s genetic distance, were constructed using UPGMA and the neighbor-joining method. These results suggest that populations in group C have diverged from the other populations, while those in group B are similar to each other. For group B, fragmentation between populations should be avoided in order to maintain gene flow. For group C, the uniqueness of each population should be given the highest priority when planning genetic conservation measures for the species.     

基于SSR标记的大明松天然群体遗传多样性分析

大明松是广西和贵州特有的高山松类,具有很高的经济价值和生态价值,其自然种群长期没有得到充分的保护和利用,不利于该树种长期稳定发展。为了合理保护和开发利用大明松天然遗传资源,该文利用12个SSR分子标记对大明松3个天然群体进行遗传多样性研究,分析其群体间的遗传分化和基因流,为该物种的保护策略提供参考。研究结果表明:(1)12对引物共检测到37 个等位基因,多态位点百分率为100%。每个位点平均观察等位基因数(Na)为3.08,平均有效等位基因数(Ne)为1.68, 不同位点间有效等位基因数差异较大; 每个位点平均观察杂合度(Ho)为0.35,平均期望杂合度(He)为0.40,平均多态信息含量(PIC)为0.31。(2)3 个群体的Shannon''s多样性指数变化范围为0.48～0.65,Nei''s基因多样度的变化范围为0.27～0.39,与其他近缘种松类相比遗传多样性偏低。群体平均观察杂合度为0.40,平均期望杂合度为0.33,平均有效等位基因数为1.58。群体间基因分化系数(Gst)为0.10,群体间的遗传分化水平较低,大部分变异均存在群体内。群体间的基因流(Nm)为2.74,说明大明松群体间的基因交流比较充分。该研究可为大明松生物多样性保护提供重要参考依据,为科学利用大明松资源打下基础。     

川西米亚罗亚高山暗针叶林岷江冷杉和糙皮桦空间格局及其关联性分析

基于2019年9月完成的川西米亚罗亚高山暗针叶林9.6 hm~2动态样地的调查数据,分析了主要优势种岷江冷杉(Abies fargesii var.faxoniana)与糙皮桦(Betula utilis)的径级结构,并运用O-ring统计中的成对相关函数g(r)和g₁₂(r),研究了两个优势种的空间格局及其种内、种间的关联性。结果表明：岷江冷杉与糙皮桦径级分布连续,均呈倒“J”型。岷江冷杉与糙皮桦的不同径级个体主要呈现由聚集分布向随机分布发展的趋势。岷江冷杉的小树对幼树、中树对幼树、中树对小树以及大树对中树的种内相关性在所有空间尺度上均为显著正相关(P<0.05),而相同径级糙皮桦的种内相关性则表现为由显著正相关(P<0.05)逐渐向无显著相关(P>0.05)变化。随着空间尺度的增大,岷江冷杉的大树对幼树、大树和小树由无显著相关(P>0.05)逐渐向显著正相关(P<0.05)变化,糙皮桦的大树对幼树由显著负相关(P<0.05)逐渐向无显著相关(P>0.05)变化。岷江冷杉大树对糙皮桦所有径级个体的种间相关性主要呈现由为显...     

中国东部沿海水仙归化群体的遗传多样性

为揭示我国东部归化水仙(Narcissus tazetta var. chinensis)的群体遗传多样性,利用2个叶绿体基因mat K和trn H-psb A片段对采自沪、浙、闽的5个代表群体的49株水仙进行了评估。结果表明,双基因联合序列的总长为1443bp,共定义6个单倍型,各归化群体的遗传多样性水平为DLSYPTDNJD=ZZCMD。AMOVA分析表明,群体内变异为遗传变异的主要来源(91.98%),群体间的遗传分化较低(Fst=0.080 22)。群体物种水平上的谱系结构不显著(Nst=0.020Gst=0.031;P0.05)。Mantel检验表明水仙群体间的遗传距离与地理距离呈显著的线性相关(r=0.929,P=0.02 0.05)。中性检验和错配分布分析结果均暗示水仙群体背离了快速扩张模型的假设。单倍型分布的中介网络图结合系统发育NJ树均将所有群体划分为2大分支。因此,我国东部沿海水仙归化群体整体遗传多样性水平较低,各群体间遗传分化较弱,遗传变异主要来自群体内,物种近期未经历扩张事件,可能是基因流受海岛隔离、自身生物学特征、生境异质性与及人为干扰的综合作用影响。     

The diversity of chloroplast microsatellite loci in Siberian fir (Abies sibirica Ledeb.) and two Far East fir species A. nephrolepis (Trautv.) Maxim. and A. sachalinensis Fr. Schmidt

The genetic variability in 29 populations of Abies sibirica, three of A. nephrolepis, and seven of A. sachalinensis was studied using SSR markers of chloroplast DNA. Among ten primer pairs examined, pairs Pt71936 and Pt30204 gave stable amplification and polymorphic products (with nine and fourteen alleles, respectively). Totally, 70 haplotypes were found, 43 in A. sibirica, 49 in A. sachalinensis, and 31 in A. nephrolepis. The highest values of genetic diversity parameters were observed in A. sachalinensis, and the lowest in A. sibirica. The Siberian fir differs from Far East species by the uneven multimodal frequency distributions of allele length in both cpSSR loci, which is explained by the presence of few separated from each other dominating haplotypes. This fact indicates that A. sibirica and the Far East species have different demographic histories. In A. sibirica, the proportion of diversity between populations in the total genetic diversity, calculated taking into account the differences between haplotypes (R _ST) was 8.34 and 4.42% without accounting for haplotypes differences (R _ST > G _ST, P = 0.01). The pairwise G _ST correlate significantly with geographic distances between the populations A. sibirica and with genetic distances D calculated from allozyme data. No such correlations were found with the R _ST parameter. The results of cpSSR variability analysis strongly support the conclusions inferred from allozyme data: several geographic groups of comparatively genetically close populations are identified, which may be explained by the history of colonization of the present-day Siberian fir range. Original Russian Text ? S.A. Semerikova, V.L. Semerikov, 2007, published in Genetika, 2007, Vol. 43, No. 12, pp. 1637–1646.     

Conservation genetics assessment and phylogenetic relationships of critically endangered Hucho bleekeri in China

Hucho bleekeri is a critically endangered salmonid fish found in the Yangtze River drainage in China. In this study, the genetic diversity of a small population (n = 43) was first assessed with partial mitochondrial DNA sequences (D‐loop region and a cytochrome b gene [CYTB] gene fragment) and 15 microsatellite markers. Low levels of nucleotide diversity (Pi) were demonstrated in the H. bleekeri population based on the two mitochondrial DNA markers. The number of haplotypes (h) and the haplotype diversity (Hd) in the D‐loop region (12 haplotypes and Hd = 0.8208) were higher than in the CYTB gene fragment (three haplotypes and Hd = 0.0941). The number of microsatellite alleles (Na) ranged from 2 to 13 in these individuals. The mean observed heterozygosity (Ho) and the expected heterozygosity (He) were 0.59719 and 0.44735, respectively. Analysis of molecular variance showed that the degree of differentiation in the population was low (F_ST = 0.04041) and the coefficient of inbreeding (F_IS) was negative, indicating no obvious evidence of inbreeding in this population. A demographic assessment suggested that this species expanded a long time ago, but has suffered great losses in recent years. A molecular phylogenetic analysis clearly indicated that H. bleekeri is not introgressed by Brachymystax lenok tsinlingensis. The baseline population genetic information supplied by this study will be vital in monitoring this highly threatened species.     

拉雅松遗传多样性及同域分布种间亲缘关系分析

拉雅松是广西西北部稀有的乡土用材、用脂树种,有较高的经济价值,但其遗传多样性状况及种间进化关系未知。利用SSR分子标记检测拉雅松群体遗传多样性,希望对该物种保护策略的制定提供参考依据。此外,鉴于该地区自然分布的松属树种仅有拉雅松、细叶云南松与马尾松三个种,试图利用SSR分子标记信息分析拉雅松与细叶云南松、马尾松的种间亲缘关系。结果表明:7对SSR引物在拉雅松群体共检测到14个等位基因。有效等位基因数为1.653,观测杂合度为0.577,期望杂合度为0.374,Shannon信息指数为0.540,Nei多样性指数为0.367,表明拉雅松具有较高的遗传多样性。拉雅松与马尾松遗传距离最近为0.0175,与3个细叶云南松群体距离较远,平均为0.0525。拉雅松与马尾松、细叶云南松平均共祖系数(Θ)分别为0.094、0.066,据此推测拉雅松可能与马尾松存在较近的亲缘关系。讨论了拉雅松的遗传多样性保护策略。     

基于叶绿体DNA非编码序列的蒙古扁桃谱系地理学研究

该研究选取中国西北干旱区第三纪孑遗植物蒙古扁桃（Amygdalus mongolica）,基于叶绿体DNA非编码trnH psbA序列对蒙古扁桃17个居群324个个体进行了谱系地理学研究。结果表明：（1）蒙古扁桃trnH psbA序列长度350 bp,变异位点63个,共有9种单倍型,居群间总遗传多样性为（H_t）为0.758,居群内平均遗传多样性为（H_s）为0.203,贺兰山东麓及阴山南麓边缘的居群具有较高的单倍型多样性及核苷酸多样性并固定较多特有单倍型,推测这2个地区是蒙古扁桃在第四纪冰期时的重要避难所。（2）AMOVA分析表明,居群间的遗传变异为83.84%,居群内的遗传变异为16.16%,居群间遗传分化系数N_st>G_st（N_st=0.733, G_st=0.655, P>0.05）,表明蒙古扁桃不存在明显的谱系地理结构;根据单倍型地理分布及网络关系图,把蒙古扁桃自然地理居群分为东、西两大地理组群,而且东、西地理组群没有共享单倍型;居群遗传结构分析表明,两大地理组群遗传分化较大。（3）蒙古扁桃居群在间冰期或冰期后经历了近期的居群扩张,由于奠基者效应使得多数居群只固定了单一的单倍型。     

Strong Genetic Differentiation of Primula sikkimensis in the East Himalaya–Hengduan Mountains

The East Himalaya-Hengduan Mountains region is the center of diversity of the genus Primula, and P. sikkimensis is one of the most common members of the genus in the region. In this study, the genetic diversity and structure of P. sikkimensis populations in China were assessed using inter-simple sequence repeat (ISSR) and chloroplast microsatellite markers. The 254 individuals analyzed represented 13 populations. High levels of genetic diversity were revealed by ISSR markers. At the species level, the expected heterozygosity and Shannon’s index were 0.4032 and 0.5576, respectively. AMOVA analysis showed that 50.3% of the total genetic diversity was partitioned among populations. Three pairs of chloroplast microsatellite primers tested yielded a total of 12 size variants and 15 chloroplast haplotypes. Strong cpDNA genetic differentiation (G _ST = 0.697) and evidence for phylogeographic structure were detected (N _ST = 0.788, significantly higher than G _ST). Estimated rates of pollen-mediated gene flow are approximately 27% greater than estimated rates of seed-mediated gene flow in P. sikkimensis. Both seed and pollen dispersal, however, are limited, and gene flow among populations appears to be hindered by the patchiness of the species’ habitats and their geographic isolation. These features may have played important roles in shaping the genetic structure of P. sikkimensis. A minimum-spanning tree of chloroplast DNA haplotypes was constructed, and possible glacial refugia of P. sikkimensis were identified.