Production of polyesters consisting of medium chain length 3-hydroxyalkanoic acids by Pseudomonas mendocina 0806 from various carbon sources

Pseudomonas mendocina strain 0806 was isolated from oil-contaminated soil and found to produce polyesters consisting of medium chain length 3-hydroxyalkanoates (mclPHAs). The monomers of mclPHAs contained even numbers of carbon atoms, such as 3-hydroxyhexanoate (HHx or C₆), 3-hydroxyoctanoate (HO or C₈), and/or 3-hydroxydecanoate (HD or C₁₀) as major components when grown on many carbon sources unrelated to their monomeric structures, such as glucose, citric acid, and carbon sources related to their monomeric structures, such as myristic acid, octanoate, or oleic acid. On the other hand, PHA containing both even and odd numbers of hydroxyalkanoates (HA) monomers was synthesized when the strain was grown on tridecanoic acid. The molar ratio of carbon to nitrogen (C/N) had a significant effect on PHA composition: the strain produced PHAs containing 97–99% of HD monomer when grown in a glucose ammonium sulfate medium of C/N<20, and 20% HO, and 80% of the HD monomer when growth was conducted in media containing C/N>40. It was demonstrated that the HO/HD ratio in the polymers remained constant in media with a constant C/N ratio, regardless of the glucose concentration. Up to 3.6 g/L cell dry weight containing 45% of PHAs was produced when the strain was grown for 48 h in a medium containing 20 g/L glucose with a C/N ratio of 40.     

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The utilization of short-chain monocarboxylic acids as carbon sources for the production of gamma-linolenic acid by Mucor strains in fed-batch culture

The Fischer-Tropsch reaction water, which contains C₂ to C₅ monocarboxylic acids, generated as a co-product of the Sasol industrial oil-from-coal process, constitutes a potential cheap carbon substrate for the production of gamma-linolenic acid (GLA) by selced Mucor species. Three strains of Mucor were each grown in an air-lift reactor operated in a fed-batch, pH-stat mode under N-limitation with a mixture of C₂ to C₅ monocarboxylic acids as both pH titrant and carbon source. The production of GLA from this substrate was evaluated. Growth typically resulted in the rapid assimilation of acetic, n-butyric and n-valeric acids. Although propionic, iso-butyric and iso-valeric acids were assimilated to varying degrees, these acids accumulated in the culture. Mucor circinelloides CBS 203.28 gave the best results in that it assimilated 36% to 100% of each acid, had a biomass yield coefficient of 0.3 (calculated on acids utilized), and contained 28% crude oil, 84% of which comprised neutral lipids with a GLA content of 14.4%, giving 33 mg GLA/g biomass. GLA accumulation coincided with a decrease in the stearic-acid content of the neutral-lipid fraction. The results were comparable with previous results obtained with acetic acid and glucose as sole carbon sources, demonstrating the feasibility of producing GLA from the above mixture of organic acids.     

The effect of different nitrogen and carbon sources on amino acid synthesis in Ulva,Dictyota and Pterocladia

Summary This investigation includes a study of the effect of ammonium salt, nitrate and urea as nitrogen sources; vitamin B₆ as cofactor in transamination, and of acetate, pyruvate and glucose as carbon sources on the dry weight, total nitrogen and amino acid synthesis in Ulva, Dictyota and Pterocladia. The results showed that urea and to a lesser extent ammonium salt were better nitrogen sources for either Ulva or Pterocladia, while ammonium salt was best for Dictyota. Vitamin B₆ was effective in transaminations and resynthesis of amino acids in the three marine algae, especially Ulva. Pyruvate was a better carbon source than either acetate or glucose in increasing dry weights, total nitrogen and amino acid synthesis in Ulva and Dictyota, whereas acetate was best in Pterocladia.     

Biodegradation and conversion of alkanes and crude oil by a marine Rhodococcus

A hydrocarbon degrader isolated from a chronically oil-polluted marine site was identified as Rhodococcus sp. on the basis of morphology, fatty acid methyl ester pattern, cell wall analysis, biochemical tests and G + C content of DNA. It degraded upto 50% of the aliphatic fraction of Assam crude oil, in seawater supplemented with 35 mM nitrogen as urea and 0.1 mM phosphorus as dipotassium hydrogen orthophosphate, after 72 h at 30 ° and 150 revolutions per minute. The relative percentage of intracellular fatty acid was higher in hydrocarbon-grown cells compared to fructose-grown cells. The fatty acids C₁₆ , C16_{16 :1} C₁₈ and C_{18 : 1} were constitutively present regardless of the growth substrate. In addition to these constitutive acids, other intracellular fatty acids varied in correlation to the hydrocarbon chain length supplied as a substrate. When grown on odd carbon number alkanes, the isolate released only monocarboxylic acids into the growth medium. On even carbon number alkanes only dicarboxylic acids were produced.     

Enhancement of growth and antibiotic titre inCephalosporium acremonium induced by sesame oil

The role of sesame oil as part of the carbon source on growth and cephalosporin C production byCephalosporium acremonium was studied in shake-flask fermentation. The growth and antibiotic production were maximum on the fifth and sixth day, respectively, irrespective of the presence of sesame oil. Sesame oil enhanced cephalosporin C production by 54%. Analysis of fatty acid profile indicated that C_18∶1, C_18∶2 and C_18∶3 are the major fatty acids inC. acremonium. The percentage of C_18∶2 was higher in the culture grown with sesame oil.     

Biostimulation of n-Alkane Degradation in Diesel Fuel-Spiked Soils

Nutrient enhancement of bioremediation with nitrogen, namely biostimulation, increases process performance. Selection of a proper nitrogen source is critical for bioremediation applications. In this study, the effects of different nitrogen sources on biodegradation of C₁₀–C₂₅ n-alkane compounds in diesel fuel-spiked soil were revealed, and the most appropriate nitrogen source for biodegradation of semi- and non-volatile n-alkanes was investigated. Bioremediation of diesel fuel contaminated soil was monitored in lab-scale reactors for 15 days. Ammonium sulfate, potassium nitrate and urea were used as nitrogen sources. Carbon dioxide and oxygen levels in the reactors were recorded to monitor microbiological activity. Contaminant removal process was investigated by pH, heterotrophic plate count, total petroleum hydrocarbons (TPH) and C₁₀–C₂₅ n-alkane analyses. First-order kinetic constants were calculated via respirometric and contaminant concentration data. According to total C₁₀–C₂₅ n-alkane removal levels and degradation rate constants, ammonium sulfate addition resulted in the most efficient contaminant removal followed by potassium nitrate and urea. Simultaneous degradation of individual n-alkanes was observed for all of the nitrogen sources. Urea addition changed the distribution of individual n-alkane concentrations relative to the pre-experimental concentrations. Nitrogen source type had no differential effect on degradation rates of semi- (C₁₀–C₁₆) and non-volatile (C₁₇–C₂₅) fractions.     

Palm oil utilization for the simultaneous production of polyhydroxyalkanoates and rhamnolipids by <Emphasis Type="Italic">Pseudomonas aeruginosa</Emphasis>

Direct utilization of palm oil for the simultaneous production of polyhydroxyalkanoates (PHAs) and rhamnolipids was demonstrated using Pseudomonas aeruginosa IFO3924. By secreted lipase, palm oil was hydrolyzed into glycerol and fatty acids. Fatty acids became favorable carbon sources for cell growth and PHA production via β-oxidation and glycerol for rhamnolipid production via de novo fatty acid synthesis. Both PHA and rhamnolipid syntheses started after the nitrogen source was exhausted and cell growth ceased. PHA synthesis continued until all fatty acids were exhausted, and at that time, PHA content in the cells reached a maximum, but stopped despite the remaining glycerol (<2g/l). In contrast, rhamnolipid synthesis continued until glycerol was exhausted.     

Utilization of gas oil by a yeast culture

A mixed yeast culture (Culture 4) was grown on representative gas oil samples as well as paraffin wax. Culture 4 was found to utilize n-paraffinic hydrocarbons almost quantitatively from most gas oil fractions; significant alteration of other hydrocarbon components was not detected. Generation times of 4.0–9.0hr. were typical during the exponential growth phase in fermentations with various gas oil fractions. Cell yields were 70–90% based on n-paraffin utilization. The culture appeared to exhibit maximum efficiency of n-alkane removal in the C₁₉ to C₂₄ range. The cells recovered from the fermentations contained 8.8–9.3% nitrogen. Paraffin wax also served as a suitable carbon source when dissolved in 2,6,10,14-tertramethylpentadecane (pristane). However, substrate utilization appeared to be incomplete.     

Fatty acids in green algae cultivated on a pilot-plant scale

Fatty acids fromChlorella vulgaris, Scenedesmus obliquus var.acutus and from a mixed culture of the two strains, Melnik, were converted to methyl esters, separated by gas chromatography, and identified by means of standards. The spectrum of fatty acids included both saturated and unsaturated acids (with odd and even numbers of carbon atoms) from C₁₂ to C₂₂. Fatty acids C_16:0, C_18:0 and C_20:3 were the major components in all cultures. Pure strains differed from the mixed culture in the production of C_18:1, C_12:0 and C_19:2 acids; the first of these was present in higher amounts in pure cultures only, the latter two being found in the mixed culture. The level of lipids was lower as compared to the literature data and their extractability was affected by the manner of preparation of algae and extraction conditions.     

Biochemical Effects of Fatty Acid and its Derivatives on l-Glutamic Acid Fermentation

In the preceding paper on the interrelation between sucrose ester of fatty acid and biotin, the fatty acid being a mixture of C₁₀ to C₁₈ acid, it was described that carbon chain length of fatty acid has a great influence on the accumulation of l-glutamic acid. Fatty acids with C₁₂ to C₁₈ chain length, particularly myristic, palmitic and margaric acids were effective on the accumulation of l-glutamic acid in the culture medium containing sufficient biotin, whereas lower and higher length acids were ineffective. In the form of polyoxyethylene sorbitan or polyethylene glycol ester, C₁₆ and C₁₈ acids were remarkably effective. However, the ester of C₁₂ acid and polyoxyethylene ethers of C₁₂ to C₁₈ alcohols had little or no effect.     

Carbon sources-dependent carotenoid production in metabolically engineered <Emphasis Type="Italic">Escherichia coli</Emphasis>

The effects of three phosphoenolpyruvate (PEP)-dependent PTS carbon sources (glucose, mannose and maltose) and three non-PTS carbon sources (glycerol, galactose, and lactose) on the formation of four carotenoids with diverse structures and on the cell growth of the recombinant Escherichia coli were investigated. The biosynthetic pathways of four carotenoids, C₃₀ diapolycopene, C₃₀ diapotorulene, C₄₀ lycopene, and C₄₀ beta-carotene, were engineered in E. coli. The resulting E. coli cells were grown in a mineral medium supplemented with each of the six carbon sources. Among the six carbon sources, non-PTS glycerol showed the highest performance in production of all four carotenoid structures, whereas PTS glucose showed the lowest performance. Based on the conversion yield, carotenoid-producing capability, and the cell density, we found that there was no close correlation between PTS and non-PTS transport mechanism and carotenoid formations in E. coli.     

Photosynthetic acclimation and resource use by the C3 and C4 subspecies of Alloteropsis semialata in low CO2 atmospheres

During the past 25 Myr, partial pressures of atmospheric CO₂ (C_a) imposed a greater limitation on C₃ than C₄ photosynthesis. This could have important downstream consequences for plant nitrogen economy and biomass allocation. Here, we report the first phylogenetically controlled comparison of the integrated effects of subambient C_a on photosynthesis, growth and nitrogen allocation patterns, comparing the C₃ and C₄ subspecies of Alloteropsis semialata. Plant size decreased more in the C₃ than C₄ subspecies at low C_a, but nitrogen pool sizes were unchanged, and nitrogen concentrations increased across all plant partitions. The C_3, but not C₄ subspecies, preferentially allocated biomass to leaves and increased specific leaf area at low C_a. In the C₃ subspecies, increased leaf nitrogen was linked to photosynthetic acclimation at the interglacial C_a, mediated via higher photosynthetic capacity combined with greater stomatal conductance. Glacial C_a further increased the biochemical acclimation and nitrogen concentrations in the C₃ subspecies, but these were insufficient to maintain photosynthetic rates. In contrast, the C₄ subspecies maintained photosynthetic rates, nitrogen‐ and water‐use efficiencies and plant biomass at interglacial and glacial C_a with minimal physiological adjustment. At low C_a, the C₄ carbon‐concentrating mechanism therefore offered a significant advantage over the C₃ type for carbon acquisition at the whole‐plant scale, apparently mediated via nitrogen economy and water loss. A limiting nutrient supply damped the biomass responses to C_a and increased the C₄ advantage across all C_a treatments. Findings highlight the importance of considering leaf responses in the context of the whole plant, and show that carbon limitation may be offset at the expense of greater plant demand for soil resources such as nitrogen and water. Results show that the combined effects of low CO₂ and resource limitation benefit C₄ plants over C₃ plants in glacial–interglacial environments, but that this advantage is lessened under anthropogenic conditions.     

Cellulase activity of some phytopathogenic fungi isolated from diseased leaves of broad bean

Forty-five fungal species and two varieties belonging to the 23 genera were collected from 50 samples of diseased leaves of broad bean collected from Qena Governorate in Egypt on glucose-Czapek’s, dichloran-chloramphenicol-malt extract and dichloran-chloramphenicol-peptone agar at 28 °C. The most common genera were Alternaria, Aspergillus, Cladosporium, Fusarium, Mycosphaerella and Penicillium. The most prevalent species were Alternaria alternata, Aspergillus flavus, A. fumigatus, A. niger, Cladosporium cladosporioides, Fusarium merismoides, Mycosphaerella tassiana and Penicillium chrysogenum. Among the eight dematiaceous Hyphomycetes phytopathogenic fungi screened for their abilities to produce both exo- and endo-β-1,4-glucanase enzymes (C₁ and C_x), five species had high C₁ enzyme production and two species had high C_x enzyme production. However, two and three species were moderately active in producing C₁ and C_x enzymes, respectively. The remaining species had low production of both C₁ and C_x enzymes. The highest cellulase activity was recorded by Alternaria citri and Cochliobolus spicifer for C₁ and by A alternata and A. citri for C_x enzyme. Maximum production of C₁ enzyme by A. citri and C. spicifer was obtained after six days of incubation at 30 °C with an initial pH of 6 in a culture medium containing lactose and calcium nitrate as the carbon and nitrogen sources, respectively. The highest C_x enzyme production was by A. alternata and A. citri,which was recorded after eight days of incubation at 30 °C with an initial pH of 6 in a culture medium containing carboxymethyl cellulose and sodium or calcium nitrate as the carbon and nitrogen sources, respectively.     

Phospholipid fatty acid ester composition ofPasteurella multocida andActinobacillus lignieresii

Cell surface hydrophobicity properties vary dramatically, whereas cell envelope phospholipid composition is essentially identical among strains ofPasteurella multocida andActinobacillus lignieresii. Fatty acid ester composition of the major phospholipid fractions from cell surface hydrophobicity variants was examined to determine whether hydrophobic properties are influenced by cell envelope fatty acid content. Individual phospholipids were resolved by preparative thin-layer chromatography, and methanolysis was performed with boron trifluoride-methanol. Gas-liquid chromatographic analysis revealed the organisms to be similar qualitatively, whereas hydrophobic variants exhibited consistently, greater and more disparate C_16:0+C_16:1/C_14:0 ratios in all fractions. Fatty acid composition of phospholipids may be related to surface hydrophobicity properties ofP. multocida variants. However, comparative data obtained forA. lignieresii revealed a degree of similarity withP. multocida that precludes use of this parameter as a means for differentiation of thesePasteurellaceae type species, thereby supporting their taxonomic relatedness.     

Abundance of Macroalgal Organic Matter in Biofilms: Evidence from n-Alkane Biomarkers

Biofilm development on titanium panels immersed in the surface waters of Dona Paula Bay was investigated using molecular biomarkers such as n-alkanes and other chemical and biological parameters. Biofilm biomass measured as organic carbon (OC), organic nitrogen (ON), chlorophyll a, diatoms and bacterial numbers on the titanium panels generally increased over the period of immersion. Total lipids and n-alkane concentration also showed similar trends. n-alkanes from C₁₂ to C₃₀ were detected in the biofilm samples, which showed a bimodal distribution. The first mode consisted of n-alkanes > C₂₃ with a strong even over odd predominance. In the second mode, the n-alkanes < C₂₃ were more abundant with odd carbon number maxima at C₁₅, C₁₇ and C₁₉ and a strong odd over even carbon number predominance (Carbon Preference Index > 2). The predominance of these odd-chain n-alkanes strongly indicates that the organic matter derived from macroalgal sources was the major contributor to the biofilm organic matter developed on the titanium panels over the 15 d period of study. The data suggest that molecular characterization is a useful tool in understanding the sources of biofilm organic matter. The observed abundance of macroalgal organic matter during the 15 d period of biofilm development may play an important role in subsequent fouling by micro- and macrofouling organisms.     

Plant and fertiliser effects on rhizodegradation of crude oil in two soils with different nutrient status

Soils and sediments polluted with crude oil are of major environmental concern on various contaminated sites. Outdoors pot experiments were conducted to test the phytodegradation potential of common reed (Phragmites australis) and poplar (Populus nigra × maximowiczii) in fertilised and non-fertilised control treatments. Two topsoils (E, G) of different texture were mixed with crude oil. Soil analysis included hydrocarbon (HC) measurements, detection of labile phosphorus and mineralised nitrogen as well as dehydrogenase activity. Increased HC degradation by native soil biota was clearly related to higher P availability in soil G and to fertilisation in soil E. Except of the non-fertilised common reed treatment, plants did not enhance crude oil degradation. We found even inhibited degradation of high molecular weight HC in the presence of plants together with declining labile phosphorous concentrations due to planting on soil E. Native soil biota were able to use the whole range of crude oil compounds (C₁₀ to C₆₀) as a carbon source in the presence of sufficient nutrient concentrations in soil. This study is the first to show that reduced HC degradation in the higher molecular weight crude oil fraction (C₂₀ to C₄₀) is likely to be a consequence of decreased phosphorus availability for microorganisms in the plant rhizosphere.     

Analysis of Bitter Orange Petitgrain Essential Oil by Combined Gas Chromatography-Mass Spectrometry

Candida catenulata CBS 1904, the previous type strain of C. ravautii, was selected as the best strain for the production of threo-O_s-isocitric acid from water-insoluble carbon sources, non-carbohydrates. The addition of surfactants, lipophilic polyoxyethylene nonyl phenyl ethers, was essential for the acid production, because the cell surface of the strain was less lipophilic. «-Alkanes, ranging from C_n to C_l4, gave the acid in high yields. The acid was produced in ajar fermentor in an about 90% yield on a weight basis as to «-tetradecane supplied. The acid was easily recovered, as crystals of its monopotassium salt, from the concentrated culture broth filtrate.     

帽儿山地区不同土地利用方式下土壤-微生物-矿化碳氮化学计量特征

土地利用方式的变化导致土壤碳氮含量及其化学计量关系的变化,然而土壤微生物化学计量及其驱动的碳氮矿化过程如何响应这种变化仍不明确。以帽儿山地区天然落叶阔叶林、人工红松林、草地和农田4种不同土地利用类型为对象,测定其土壤有机碳(C_(soil))、全氮(N_(soil))、微生物生物量碳和氮(C_(mic)和N_(mic))、土壤碳和氮矿化速率(C_(min)和N_(min)),旨在比较不同土地利用方式对土壤、微生物碳氮化学计量特征及矿化速率的影响,探索土壤-微生物-矿化之间碳氮化学计量特征的相关性,揭示微生物对土壤碳氮化学计量变化的响应和调控机制。结果显示:C_(soil)、N_(soil)、C_(mic)、N_(mic)和C_(min)均呈现天然落叶阔叶林人工红松林草地农田,而天然落叶阔叶林和草地的N_(min)显著高于人工红松林和农田。土地利用方式显著影响土壤和微生物碳氮比(C∶N_(soil)和C∶N_(mic)),均呈现农田最高。不同土地利用方式的数据综合分析发现:碳氮矿化速率比与C∶N_(mic)呈负相关,而和微生物与土壤碳氮化学计量不平衡性(C∶N_(imb))显著正相关。单位微生物生物量的碳矿化速率(qCO_2)随着C∶N_(mic)的增加而降低,而单位微生物生物量的氮矿化速率(qAN)随着C∶N_(mic)的增加而增加。C∶N_(imb)与qCO_2正相关,与qAN负相关。以上结果表明,微生物会通过改变自身碳氮化学计量、调整碳氮之间相对矿化速率,以适应土地利用变化导致的土壤碳氮及其化学计量的变异性,以满足自身生长和代谢的碳氮需求平衡。