Ubiquitination of pattern recognition receptors in plant innate immunity

Lacking an adaptive immune system, plants largely rely on plasma membrane‐resident pattern recognition receptors (PRRs) to sense pathogen invasion. The activation of PRRs leads to the profound immune responses that coordinately contribute to the restriction of pathogen multiplication. Protein post‐translational modifications dynamically shape the intensity and duration of the signalling pathways. In this review, we discuss the specific regulation of PRR activation and signalling by protein ubiquitination, endocytosis and degradation, with a particular focus on the bacterial flagellin receptor FLS2 (flagellin sensing 2) in Arabidopsis.     

Innate signaling in the inflammatory immune disorders

Pattern recognition receptors (PRRs) of innate immune cells recognize the conserved molecular signatures on pathogens, termed pathogen-associated molecular patterns. PRRs also recognize endogenous damage-associated molecular patterns. Following pathogen infection or tissue damage, the stimulation of PRRs activates distinct but shared signaling pathways that lead to effector mechanisms in innate host defense. PRR signaling is strictly and finely tuned to ensure the appropriate duration and strength to prevent damaging inflammation to the host. Here we attempt to provide a brief background on the agonists and signal transduction pathways of PRRs and summarize the mechanisms underlying the control of PRR signaling, with a particular focus on the recent progress of the involvement of PRR signaling in the inflammatory immune disorders.     

模式识别受体的胞内转运及其在植物免疫中的作用

植物利用细胞表面模式识别受体(PRRs)来感知病原相关分子模式(PAMPs), 进而触发自身的免疫反应(PTI)。在植物免疫过程中, PRRs在细胞内的正确定位对其生理功能的发挥至关重要。PRRs蛋白可以在内质网(ER)上合成, 并通过胞吐被分泌到质膜(PM)上。此外, PRRs蛋白也可以通过胞吞进行胞内循环或降解。细胞可以通过胞内转运降解PRRs蛋白以终止信号转导, 也可以通过形成胞内体进行信号传递。该文概述了PRRs蛋白及其配体的研究进展以及PRRs蛋白的胞内转运在植物免疫中的重要作用。     

Molecular view on PRR cross-talk in antifungal immunity

The identification of a major class of innate immune receptors, termed pattern recognition receptors (PRRs), has boosted research on innate pathogen recognition. The immune response to a specific pathogen is not restricted to the recognition by one type of PRR or activation of a single cell type, but instead comprises complex collaborations between different receptors, cells and signal mediators. Here we will discuss the cross-talk between PRRs involved in fungal recognition, focusing on the molecular interactions occurring at the plasma membrane.     

Retrograde trafficking and plasma membrane recycling pathways of the budding yeast Saccharomyces cerevisiae

The endosomal system functions as a network of protein and lipid sorting stations that receives molecules from endocytic and secretory pathways and directs them to the lysosome for degradation, or exports them from the endosome via retrograde trafficking or plasma membrane recycling pathways. Retrograde trafficking pathways describe endosome‐to‐Golgi transport while plasma membrane recycling pathways describe trafficking routes that return endocytosed molecules to the plasma membrane. These pathways are crucial for lysosome biogenesis, nutrient acquisition and homeostasis and for the physiological functions of many types of specialized cells. Retrograde and recycling sorting machineries of eukaryotic cells were identified chiefly through genetic screens using the budding yeast Saccharomyces cerevisiae system and discovered to be highly conserved in structures and functions. In this review, we discuss advances regarding retrograde trafficking and recycling pathways, including new discoveries that challenge existing ideas about the organization of the endosomal system, as well as how these pathways intersect with cellular homeostasis pathways.     

病原菌保守性特征分子及其介导的植物抗病性

每种病原菌都有一些保守的特征性分子,也称病原菌相关分子模式(PAMPs)。植物细胞表面的模式识别受体PRRs通过识别病原菌的PAMPs而激发免疫反应(PTI)。目前,已发现多种PRRs/PAMPs的识别模式,如拟南芥FLS2识别细菌鞭毛蛋白、拟南芥EFR识别细菌延长因子Tu(EF-Tu)、水稻CEBiP/CERK1识别真菌几丁质、水稻抗病蛋白XA21识别白叶枯病菌的硫化蛋白Ax21等。这些识别模式都能激发植物的基础免疫反应以抵抗病原菌的侵染。但是病原菌为了成功侵染寄主植物,也进化出一些致病机制,例如向植物细胞中注入毒性效应蛋白阻断PTI途径,或者产生一种"自我伪装"机制以逃避PRRs的识别。因此,研究者们根据PAMPs的结构特性对PRRs重新改造,以期使植物获得持久、广谱和高效的抗性。综述目前已知的PAMPs分子类型、PRRs/PAMPs的识别机制及改造后的新型PRRs,并分析PTI研究中存在的问题及其发展前景。     

Palmitoylated transmembrane adaptor proteins in leukocyte signaling

Transmembrane adaptor proteins (TRAPs) are structurally related proteins that have no enzymatic function, but enable inducible recruitment of effector molecules to the plasma membrane, usually in a phosphorylation dependent manner. Numerous surface receptors employ TRAPs for either propagation or negative regulation of the signal transduction. Several TRAPs (LAT, NTAL, PAG, LIME, PRR7, SCIMP, LST1/A, and putatively GAPT) are known to be palmitoylated that could facilitate their localization in lipid rafts or tetraspanin enriched microdomains. This review summarizes expression patterns, binding partners, signaling pathways, and biological functions of particular palmitoylated TRAPs with an emphasis on the three most recently discovered members, PRR7, SCIMP, and LST1/A. Moreover, we discuss in silico methodology used for discovery of new family members, nature of their binding partners, and microdomain localization.     

CD14 controls the LPS-induced endocytosis of Toll-like receptor 4

The transport of Toll-like Receptors (TLRs) to various organelles has emerged as an essential means by which innate immunity is regulated. While most of our knowledge is restricted to regulators that promote the transport of newly synthesized receptors, the regulators that control TLR transport after microbial detection remain unknown. Here, we report that the plasma membrane localized Pattern Recognition Receptor (PRR) CD14 is required for the microbe-induced endocytosis of TLR4. In dendritic cells, this CD14-dependent endocytosis pathway is upregulated upon exposure to inflammatory mediators. We identify the tyrosine kinase Syk and its downstream effector PLCγ2 as important regulators of TLR4 endocytosis and signaling. These data establish that upon microbial detection, an upstream PRR (CD14) controls the trafficking and signaling functions of a downstream PRR (TLR4). This innate immune trafficking cascade illustrates how pathogen detection systems operate to induce both membrane transport and signal transduction.     

Duration selectivity of bat inferior collicular neurons improves with increasing pulse repetition rate

Insectivorous big brown bats, Eptesicus fuscus, progressively increase the pulse repetition rate (PRR) throughout the course of hunting. While increasing PRR conceivably facilitates bats to extract information about the targets, it also inevitably affects sensitivity of their auditory neurons to pulse parameters. The present study examined the effect of increasing PRR on duration selectivity of this bat's inferior collicular (IC) neurons by comparing their impulse-duration functions determined at different PRRs. Impulse-duration functions plotted with the number of impulses in response to single pulses against pulse duration at different PRRs were described as short-pass, band-pass, long-pass, and all-pass. Short- or long-pass neurons discharged maximally to a range of short or long pulse durations. Band-pass neurons discharged maximally to one pulse duration. These three types of IC neurons were called duration tuned neurons. All-pass neurons were not duration tuned because they did not discharge maximally to any pulse duration. Increasing PRR improved duration selectivity of IC neurons by (1) increasing the number of duration tuned neurons; (2) decreasing the critical duration concomitant with increasing slope of the impulse-duration function; and (3) decreasing the 50% duration range of the impulse-duration function. This improved duration selectivity with PRR may potentially facilitate prey capture by bats.     

Regulation of stress responses by intracellular vesicle trafficking?

Being grounded to one place, plants are constantly exposed to unexpected changes in the surrounding environment. Often, the changes in environmental conditions can be very rapid, compelling the plants to continuously monitor the outside environment and to adjust their metabolism to new conditions. Many of the primary environmental stresses ensue the development of a secondary oxidative stress, resulting in tissue damage and necrosis. The acclimation process almost invariably involves changes in the pattern of expressed proteins and other molecules. This necessitates the removal of the existing molecules from their compartments and the delivery of new compounds to their target organelles. The trafficking of macromolecules is performed by a bi-directional intracellular vesicle trafficking system that delivers newly synthesized molecules to organelles and retrieves material from the organelles to cytosolic compartments, such as vacuoles or lysosomes. The plasma membrane is among the organelles that are most exposed to oxidative stress damage and therefore must be constantly recycled. Here I propose that, by adjusting the rate of trafficking to and from the plasma membrane, the cells can regulate the stress outcome. Since the vesicle trafficking is closely linked to general signal transduction pathways, such as the phosphoinositide kinase pathway, and is influenced by major plant hormones, such as abscisic acid and auxin, the vesicle trafficking machinery holds the potential to regulate the plant responses to different environmental stresses.     

Plant Surface Receptors Recognizing Microbe-Associated Molecular Patterns

As sessile, plants are inevitably exposed to environmental threats including pathogens. Due to the lack of mobile immune cells, plants solely depend on the innate immune system to defend against pathogens. The first layer of pathogen detection in plant immunity is to recognize microbe-associated molecular patterns (MAMPs) that compose structural or functional units in microbial pathogens. For this, plants utilize pattern-recognition receptors (PRRs). Continuous attack by pathogens resulting from immotility likely contributes to the extension of PRR numbers in plants, although genomeencoded. Recent findings revealed that plant PRRs as a complex dynamically switch between inactive and active forms at the plasma membrane depending on a cognate MAMP. In addition, by regulating the activity and stability of a downstream signal-relaying receptor-like cytoplasmic kinase (RLCK), plants can control the immune homeostasis. Therefore, we in this review discuss on how plants detect a pathogen and how they control immune responses at the level of PRRs in a correct and delicate way. We additionally provide a possible balancing mechanism between growth and responses to biotic and abiotic stresses in plants, which is required for survival in nature.     

Compartmentation and functions of sphingolipids

Sphingolipids (SLs) are one of the three major lipid classes in all eukaryotic cells. They function as structural molecules of membranes and can also act as highly active signaling molecules. SL biosynthesis is mainly occurring at the endoplasmic reticulum and the Golgi apparatus. However, SL intermediates are also generated at other organelles such as the plasma membrane and the lysosome. SL biosynthesis is therefore highly compartmentalized. Maintaining SL levels is necessary for the function of multiple trafficking pathways. One major challenge is to decipher the complex regulatory networks controlling SL biosynthesis, the coordination of vesicular and non-vesicular SL transport as well as their role in trafficking. Recent investigations have shed new light on the regulation of SL biosynthesis. Here, we review how SL biosynthesis is coordinated, how SLs are transported and how their levels affect trafficking pathways. Finally, we discuss recently developed methods to study SL metabolism with spatio-temporal resolution.     

The intracellular nucleotide‐binding leucine‐rich repeat receptor (SlNRC4a) enhances immune signalling elicited by extracellular perception

Plant recognition and defence against pathogens employs a two‐tiered perception system. Surface‐localized pattern recognition receptors (PRRs) act to recognize microbial features, whereas intracellular nucleotide‐binding leucine‐rich repeat receptors (NLRs) directly or indirectly recognize pathogen effectors inside host cells. Employing the tomato PRR LeEIX2/EIX model system, we explored the molecular mechanism of signalling pathways. We identified an NLR that can associate with LeEIX2, termed SlNRC4a (NB‐LRR required for hypersensitive response‐associated cell death‐4). Co‐immunoprecipitation demonstrates that SlNRC4a is able to associate with different PRRs. Physiological assays with specific elicitors revealed that SlNRC4a generally alters PRR‐mediated responses. SlNRC4a overexpression enhances defence responses, whereas silencing SlNRC4 reduces plant immunity. Moreover, the coiled‐coil domain of SlNRC4a is able to associate with LeEIX2 and is sufficient to enhance responses upon EIX perception. On the basis of these findings, we propose that SlNRC4a acts as a noncanonical positive regulator of immunity mediated by diverse PRRs. Thus, SlNRC4a could link both intracellular and extracellular immune perceptions.     

Plant and animal pathogen recognition receptors signal through non-RD kinases

Plants and animals mediate early steps of the innate immune response through pathogen recognition receptors (PRRs). PRRs commonly associate with or contain members of a monophyletic group of kinases called the interleukin-1 receptor-associated kinase (IRAK) family that include Drosophila Pelle, human IRAKs, rice XA21 and Arabidopsis FLS2. In mammals, PRRs can also associate with members of the receptor-interacting protein (RIP) kinase family, distant relatives to the IRAK family. Some IRAK and RIP family kinases fall into a small functional class of kinases termed non-RD, many of which do not autophosphorylate the activation loop. We surveyed the yeast, fly, worm, human, Arabidopsis, and rice kinomes (3,723 kinases) and found that despite the small number of non-RD kinases in these genomes (9%-29%), 12 of 15 kinases known or predicted to function in PRR signaling fall into the non-RD class. These data indicate that kinases associated with PRRs can largely be predicted by the lack of a single conserved residue and reveal new potential plant PRR subfamilies.     

Early endocytic Rabs: functional prediction to functional characterization

Endocytic pathways are highly dynamic gateways for molecules to enter cells. Functionality and specificity is in part controlled by a number of small GTPases called Rabs. In defined cellular locations, Rabs mediate multiple functions in membrane trafficking via their specific interaction with organelle membranes and a host of affector and effector molecules. On endocytic pathways, Rabs have been shown to control the formation of vesicles on the plasma membrane and the downstream delivery of internalized molecules to a number of cellular locations. As numerous Rabs are located to endocytic pathways, an internalized molecule may traverse a number of Rab specific substations or subdomains en route to its final destination. Rabs 5, 21 and 22 have all been localized to the early endocytic pathway and have been shown to share a number of characteristics to merit their segregation into a single functional endocytic group. In this review, we compare experiments that describe similarities and differences in endosome morphology and function that is mediated by their expression in cells.