Mitochondrial cytochrome b gene variation in brown bear (Ursus arctos Linnaeus, 1758) from southern part of Russian Far East

The genetic variability of brown bear Ursus arctos from the southern part of the Russian Far East was first examined based on the variations in the mitochondrial DNA cytochrome b sequence. The presence of two phylogenetic groups of haplotypes described previously for other parts of the species range was demonstrated. Part of the samples belonged to the haplotype group distributed across the whole range, while another part belonged to the rare group previously only reported for Japan and Alaska. These findings partially clarify the pattern of brown-bear colonization on the territory of the Russian Far East and Japan.     

Comparison of human papillomavirus genotypes in archival cervical cancer specimens from Alaska natives, Greenland natives and Danish Caucasians

Archival, formalin-fixed, paraffin-embedded cervical cancer specimens from 53 Alaska natives, 32 Greenland natives and 34 Danish Caucasians were analyzed for human papillomavirus (HPV) genotypes 16, 18, 31, 33, 35 and 45 and unidentified genotypes (HPV X) using PCR. The specimens were from the time period 1980-1989. No significant differences were observed in the overall HPV detection rates among cases from Alaska (98.1%), Greenland (84.4%) and Denmark (85.3%). HPV genotype 16 was the most prevalent type: 78.8% in Alaska natives, 96.3% in Greenland natives and 82.8% in Danish Caucasians. A prevalence of 21.2% HPV 31 and 30.8% HPV 33 was found in Alaska natives, of which most were coinfections with HPV 16. Only 3.7% HPV 31 and 3.7% HPV 33 were found in Greenland natives and no HPV 31 and 6.9% HPV 33 were found in Danish Caucasians. HPV 18 was only detected in Alaska natives and HPV 35 and 45 were not detected in any of the three populations. Infections with multiple genotypes were prevalent in Alaskan (36.5%) but not in Greenland natives (3. 7%) and Danish Caucasians (6.9%). The Eskimo subgroup of the Alaska native population has a significantly higher prevalence of HPV genotypes 31 and 33 associated with mixed infections in invasive cancer than the two other native subgroups (P = 0.04) and Greenland and Danish populations, reflecting genotype distributions in dysplasia and normal cervical cytology. The reason for HPV genotype diversity, although unknown, may be relevant to the current development of HPV vaccines.     

Patterns of Admixture and Population Structure in Native Populations of Northwest North America

The initial contact of European populations with indigenous populations of the Americas produced diverse admixture processes across North, Central, and South America. Recent studies have examined the genetic structure of indigenous populations of Latin America and the Caribbean and their admixed descendants, reporting on the genomic impact of the history of admixture with colonizing populations of European and African ancestry. However, relatively little genomic research has been conducted on admixture in indigenous North American populations. In this study, we analyze genomic data at 475,109 single-nucleotide polymorphisms sampled in indigenous peoples of the Pacific Northwest in British Columbia and Southeast Alaska, populations with a well-documented history of contact with European and Asian traders, fishermen, and contract laborers. We find that the indigenous populations of the Pacific Northwest have higher gene diversity than Latin American indigenous populations. Among the Pacific Northwest populations, interior groups provide more evidence for East Asian admixture, whereas coastal groups have higher levels of European admixture. In contrast with many Latin American indigenous populations, the variance of admixture is high in each of the Pacific Northwest indigenous populations, as expected for recent and ongoing admixture processes. The results reveal some similarities but notable differences between admixture patterns in the Pacific Northwest and those in Latin America, contributing to a more detailed understanding of the genomic consequences of European colonization events throughout the Americas.     

Sociocultural stress and the american native in Alaska: An analysis of changing patterns of psychiatric illness and alcohol abuse among Alaska natives

This paper presents selected morbidity and mortality statistics to outline developing trends and the current status of psychiatric illness and alcohol abuse among the Aleut, Athabascan, Yupik, Inupiat, Tlingit, Haida and Tsimpshian people of Alaska. Analysis of the records of the Indian Health Service, the Community Mental Health Centers and the Alaska Psychiatric Institute, the providers of care for Alaska Natives, shows that the number of individuals treated as inpatients and outpatients for psychiatric illness and alcohol abuse has been rising steadily. Accidental injury and suicidal behavior are common. The treated prevalence rates for these diagnoses exceed recorded rates for other American Native and non-Native groups. For each category of violent death, suicide, homicide, accidents and alcohol, rates for Alaska Natives are higher than rates for Alaska non-Natives, American Indians and the U.S. (all races) and are rising. The data suggest a public health problem in which the primary elements are behavioral disturbance and violent death.     

Recent increase in body size of the American marten Martes americana in Alaska

Using museum specimens, we studied recent changes in skull size of the American marten Martes americana , in continental Alaska. In Alaska, global warming has resulted in milder winters that may contribute to an improved food supply in the wild. In the present study, we tested the hypothesis that body size of the marten had increased during the second half of the 20th century, in response to global warming. We found that skull size, and by implication body size, increased significantly during the second half of the 20th century, possibly due to an improved food supply and/or lower metabolic demands in winter. Improved food availability in winter may result from the improved nutritional conditions for prey, and/or from increased access to prey resulting from a longer snow-free season. Longitude had a significant positive effect on skull size and a significant negative effect on teeth size. In Alaska, the climate is milder along the western coast and becomes harsher inland. Hence, the milder climate was associated with larger body size providing further support for our prediction that body size of the American marten was influenced by food availability and reduced energy expenditure. The negative relationship between longitude and teeth size may indicate a trend towards a larger prey in inland marten populations, but we have no data to support or refute this hypothesis.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 701–707.     

Occurrence and genetic typing of infectious hematopoietic necrosis virus in Kamchatka, Russia

Infectious hematopoietic necrosis virus (IHNV) is a well known rhabdoviral pathogen of salmonid fish in North America that has become established in Asia and Europe. On the Pacific coast of Russia, IHNV was first detected in hatchery sockeye from the Kamchatka Peninsula in 2001. Results of virological examinations of over 10,000 wild and cultured salmonid fish from Kamchatka during 1996 to 2005 revealed IHNV in several sockeye salmon Oncorhynchus nerka populations. The virus was isolated from spawning adults and from juveniles undergoing epidemics in both hatchery and wild sockeye populations from the Bolshaya watershed. No virus was detected in 2 other watersheds, or in species other than sockeye salmon. Genetic typing of 8 virus isolates by sequence analysis of partial glycoprotein and nucleocapsid genes revealed that they were genetically homogeneous and fell within the U genogroup of IHNV. In phylogenetic analyses, the Russian IHNV sequences were indistinguishable from the sequences of North American U genogroup isolates that occur throughout Alaska, British Columbia, Washington, and Oregon. The high similarity, and in some cases identity, between Russian and North American IHNV isolates suggests virus transmission or exposure to a common viral reservoir in the North Pacific Ocean.     

Mitochondrial DNA and microsatellite DNA variation in domestic reindeer (Rangifer tarandus tarandus) and relationships with wild caribou (Rangifer tarandus granti, Rangifer tarandus groenlandicus, and Rangifer tarandus caribou)

Reindeer (Rangifer tarandus tarandus) in Alaska are semidomestic livestock descended from 1280 animals introduced from Siberia, Russia, approximately 100 years ago. Genetic variation at 18 microsatellite DNA loci and the cytochrome b gene of mitochondrial DNA (mtDNA) was quantified in reindeer from Alaska, Siberia (Russia), and Scandinavia and compared with wild North American caribou. Mean sequence divergence among 15 mtDNA haplotypes in reindeer was 0.007 substitutions per nucleotide site, and reindeer mtDNA is polyphyletic with caribou mtDNA. Microsatellite allele and mtDNA haplotype frequencies are similar between Alaskan and Russian reindeer and differentiated between these and Scandinavian reindeer. The frequencies of microsatellite alleles and mtDNA haplotypes are different in reindeer and wild caribou (Rangifer tarandus granti, Rangifer tarandus groenlandicus, and Rangifer tarandus caribou). Alaskan reindeer have maintained a genetic variation comparable to that in Russia and differentiated from that of wild caribou, >100 years after their introduction to Alaska.     

Aldehyde dehydrogenase polymorphism in North American, South American, and Mexican Indian populations.

While about 40% of the South American Indian populations (Atacameños, Mapuche, Shuara) were found to be deficient in aldehyde dehydrogenase isozyme I (ALDH2 or E2), preliminary investigations showed very low incidence of isozyme deficiency among North American natives (Sioux, Navajo) and Mexican Indians (mestizo). Possible implications of such trait differences on cross-cultural behavioral response to alcohol drinking are discussed.     

Post-glacial colonization of northwestern North America by the forest-associated American marten (Martes americana,Mammalia: Carnivora: Mustelidae)

Phylogeographic patterns were used to assess intraspecific diversification of American martens (Martes americana). Within martens, two morphological groups (americana and caurina) have been recognized, though the level of distinction between them has been debated. We examined mitochondrial cytochrome b gene haplotypes from 680 martens to explore the colonization history of the Pacific Northwest and found two clades that correspond to the morphological groups. The widespread americana clade extends from interior Alaska south to Montana and eastward to Newfoundland and New England (i.e. northwestern, north-central and northeastern North America). The caurina clade occurs in western North America, minimally extending from Admiralty Island (southeastern Alaska) south to Oregon and Wyoming. Our data indicated two colonization events for the Pacific Northwest (one by members of each clade) and were consistent with the persistence of populations throughout past glacial periods in eastern and western refugia. Due to vegetational and geological history following the past deglaciation, we hypothesize that martens of the caurina clade spread along the North Pacific Coast, and into southeastern Alaska, earlier than martens of the americana clade. Mismatch distributions for the americana clade were indicative of populations that recently experienced demographic expansion, while mismatch distributions for the caurina clade suggested that populations were at equilibrium. These clades are reciprocally monophyletic and distinctive (interclade divergence ranged from 2.5 to 3.0% (uncorrected p), whereas, intraclade divergence was < 0.7%), and two regions of sympatry have been identified. Genetic signatures of past admixture in hybrid zones may have been extinguished during subsequent glacial periods when ranges contracted. This recurrent pattern of relatively restricted western, or Pacific coastal, lineages and more widespread eastern, or interior continental, lineages exists across broad taxonomic groups and suggests a shared biogeographical history.     

AMF colonization and community of a temperate invader and co-occurring natives grown under different CO2 concentrations for 3 years

连续3年不同CO₂浓度下一种温带外来入侵植物和两种共存本地植物丛枝菌根真菌群落及侵染率 大气CO₂浓度升高等全球变化过程不仅能促进外来植物入侵,也能改变土壤丛枝菌根真菌(AMF)的群落结构,但我们并不清楚大气CO₂浓度升高促进外来植物入侵是否与其对外来入侵植物和 本地植物AMF共生的影响有关。为回答这一问题,我们在环境和倍增CO₂浓度下连续3年栽培一年生外来入侵植物瘤突苍耳(Xanthium strumarium)与两种共存的一年生本地近缘植物,比较了AMF侵染率、土 壤养分和土壤AMF群落组成的差异。研究结果表明,大气CO₂浓度升高只在少数情况下提高根系AMF侵染率,并且瘤突苍耳AMF侵染率的提高并不比本地种多。在环境CO₂浓度下,栽培第一年瘤突苍耳的AMF侵染侵染率显著高于两种本地植物;而栽培第二年和第三年与两种本地植物的差异不显著,因为两种本地植物的AMF侵染率随种植时间的增加而增加,而瘤突苍耳AMF侵染率受种植时间的影响较小。物种、CO₂浓度和种植时间对AMF侵染率的影响与它们对土壤养分和AMF群落的影响有关,土壤养分对AMF侵染率的影响可能比AMF群落组成的影响更大,因为后者也受土壤养分的影响。上述结果表明,与本地植物相比,入侵植物能更快地与AMF形成共生关系,有利于其适应和入侵新生境;在探究全球变化如大气CO₂浓度升高等对外来植物入侵的影响时,需要考虑AMF的影响和时间效应。     

Migration of Pacific Rim Chum Salmon on the High Seas: Insights from Genetic Data

Wild stocks of chum salmon, Oncorhynchus keta, have experienced recent declines in some areas of their range. Also, the release of hatchery chum salmon has escalated to nearly three billion fish annually. The decline of wild stocks and the unknown effects of hatchery fish combined with the uncertainty of future production caused by global climate change have renewed interest in the migratory patterns of chum salmon on the high seas. We studied the composition of high-seas mixtures of maturing and immature individuals using baseline data for 20 allozyme loci from 356 populations from throughout the Pacific Rim. Composition estimates were made from three time series. Two of these time series were from important coastal migratory corridors: the Shumagin Islands south of the Alaska Peninsula and the east coast of the Kamchatka Peninsula. The third was from chum salmon captured incidentally in the Bering Sea trawl fishery for walleye pollock. We also analyzed geographically dispersed collections of chum salmon captured in the month of July. The time series show dynamic changes in stock composition. The Shumagin Island corridor was used primarily by Northwest Alaskan and Asian populations in June; by the end of July stocks from the Alaska Peninsula and southern North America dominated the composition. The composition along the Kamchatka coast changed dramatically from primarily Russian stocks in May to primarily Japanese stocks in August; the previously undocumented presence of stocks from the Alaska Peninsula and Gulf of Alaska was also demonstrated. Immature chum salmon from throughout the Pacific Rim, including large proportions of southern North American stocks, contributed to the Bering Sea bycatch during the months of September and October. The migration routes of North American stocks is far more widespread than previously observed, and the Bering Sea is an important rearing area for maturing and immature chum salmon from throughout the species' range.     

Genetic evidence suggests a widespread distribution of native North American populations of reed canarygrass

Reed canarygrass is an important agricultural crop thought to be native to Europe, Asia, and North America. However, it is one of the worst wetland invaders in North American wetlands. The native North American status has been supported by the circumstantial evidence of early botanical records and the dating and location of herbarium specimens. The lack of empirical evidence has left the North American native status of the species in doubt and prevented comparisons between native North American and Eurasian populations of the species. We utilized genetic markers to compare a wide range of European and Asian collections to DNA extracted from 38 early North American herbarium specimens. The genetic data confirm the presence of a distinct population present throughout North America in the early twentieth century, but not present in Europe or Asia, ranging from Alaska, USA to New Brunswick, Canada. These native North American populations of reed canarygrass are likely present throughout Alaska today, as one specimen was collected as recently as 1996, and may still be present in other regions of North America. Future research can utilize this dataset to determine the origin of present-day invasive populations in North American wetlands.     

Moult migration of emperor geese Chen canagica between Alaska and Russia

We studied reproductive success and post-breeding movements of 32 adult female emperor geese Chen canagica that were marked with satellite radio transmitters on their nesting area on the Yukon-Kuskokwim Delta (YKD), Alaska 2000–2004. All 16 females that failed to successfully reproduce departed the YKD and moulted remiges either on the north coast of the Chukotka Peninsula, Russia (n=15), or on St. Lawrence Island, Alaska (n=1). Of 16 females that successfully nested, one migrated to Russia following hatch whereas the remainder stayed on the YKD. While moulting on the Chukotka Peninsula, emperor geese with satellite transmitters primarily used coastal lagoons west of Kolyuchin Bay. We observed 21,150 adult-plumaged emperor geese during aerial surveys in Chukotka in 2002. Most (95%) were in the same region used by geese that had been marked with satellite transmitters in Alaska. The number of emperor geese observed in Russia was comparable to our estimate of ≥20,000 adults that either do not nest or nest unsuccessfully each year on the YKD, suggesting that most nonproductive adults, or ≥28% of the adult population departs the YKD to moult elsewhere. The number of moult migrants may be substantially higher in years of poor reproductive success or if adult-plumaged birds that are not of breeding age also leave the YKD. Moult migration of emperor geese between Alaska and Russia is likely substantially greater than previously believed. Russian moulting habitats are important to the North American population of emperor geese and events that affect survival of geese in Russia could impact population trends on the YKD. Protection of coastal lagoons on the north coast of Chukotka is warranted.     

From glacial refugia to modern populations: new assemblages of organelle genomes generated by differential cytoplasmic gene flow in transcontinental black spruce

Assessing species' range-wide cytoplasmic diversity provides valuable insights regarding their dispersal and adaptive potential in a changing environment. Transcontinental chloroplast (cpDNA) and mitochondrial DNA (mtDNA) population structures were compared to identify putative ancestral and new cytoplasmic genome assemblages in black spruce (Picea mariana), a North American boreal conifer. Mean within-population diversity and allelic richness for cpSSR markers were 0.80 and 4.21, respectively, and diminished westward. Population differentiation based on G(ST) was lower for cpDNA than for mtDNA (G(ST) =0.104 and 0.645, respectively) but appeared comparable when estimated using Jost differentiation index (D=0.459 and 0.537, respectively). Further analyses resulted in the delineation of at least three genetically distinct cpDNA lineages partially congruent with those inferred from mtDNA data, which roughly corresponded to western, central and eastern Canada. Additionally, the patterns of variation in Alaska for both cpDNA and mtDNA markers suggested that black spruce survived the last glacial maximum in this northern region. The range-wide comparison of the geographic extent of cytoplasmic DNA lineages revealed that extensive pollen gene flow between ancestral lineages occurred preferentially from west to east during the postglacial expansion of the species, while seed-mediated gene flow remained geographically restricted. This differential gene flow promoted intraspecific cytoplasmic capture that generated new assemblages of cpDNA and mtDNA genomes during the Holocene. Hence, black spruce postglacial colonization unexpectedly resulted in an increase in genetic diversity with possible adaptive consequences.     

A burial cave in the western Aleutian Islands, Alaska

During the 1998 field season, the Western Aleutians Archaeological and Paleobiological Project (WAAPP) team located a cave in the Near Islands, Alaska. Near the entrance of the cave, the team identified work areas and sleeping/sitting areas surrounded by cultural debris and animal bones. Human burials were found in the cave interior. In 2000, with permission from The Aleut Corporation, archaeologists revisited the site. Current research suggests three distinct occupations or uses for this cave. Aleuts buried their dead in shallow graves at the rear of the cave circa 1,200 to 800 years ago. Aleuts used the front of the cave as a temporary hunting camp as early as 390 years ago. Finally, Japanese and American military debris and graffiti reveal that the cave was visited during and after World War II. Russian trappers may have also taken shelter there 150 to 200 years ago. This is the first report of Aleut cave burials west of the Delarof Islands in the central Aleutians.     

Adaptive strategies and life history characteristics in a warming climate: Salmon in the Arctic?

In the warming Arctic, aquatic habitats are in flux and salmon are exploring their options. Adult Pacific salmon, including sockeye (Oncorhynchus nerka), coho (O. kisutch), Chinook (O. tshawytscha), pink (O. gorbuscha) and chum (O. keta) have been captured throughout the Arctic. Pink and chum salmon are the most common species found in the Arctic today. These species are less dependent on freshwater habitats as juveniles and grow quickly in marine habitats. Putative spawning populations are rare in the North American Arctic and limited to pink salmon in drainages north of Point Hope, Alaska, chum salmon spawning rivers draining to the northwestern Beaufort Sea, and small populations of chum and pink salmon in Canada’s Mackenzie River. Pacific salmon have colonized several large river basins draining to the Kara, Laptev and East Siberian seas in the Russian Arctic. These populations probably developed from hatchery supplementation efforts in the 1960’s. Hundreds of populations of Arctic Atlantic salmon (Salmo salar) are found in Russia, Norway and Finland. Atlantic salmon have extended their range eastward as far as the Kara Sea in central Russian. A small native population of Atlantic salmon is found in Canada’s Ungava Bay. The northern tip of Quebec seems to be an Atlantic salmon migration barrier for other North American stocks. Compatibility between life history requirements and ecological conditions are prerequisite for salmon colonizing Arctic habitats. Broad-scale predictive models of climate change in the Arctic give little information about feedback processes contributing to local conditions, especially in freshwater systems. This paper reviews the recent history of salmon in the Arctic and explores various patterns of climate change that may influence range expansions and future sustainability of salmon in Arctic habitats. A summary of the research needs that will allow informed expectation of further Arctic colonization by salmon is given.     

Variation in spring migration routes and breeding distribution of northern pintails Anas acuta that winter in Japan

In North America, spring migration routes and breeding distribution of northern pintails Anas acuta vary because some individuals opportunistically nest at mid‐latitudes in years when ephemeral prairie wetlands are available, whereas others regularly nest in arctic and sub‐arctic regions where wetland abundance is more constant. Less was known about migration routes and breeding distribution of pintails in East Asia. From 2007–2009 we marked 198 pintails on their wintering areas in Japan with satellite transmitters to: 1) document spring migration routes and summer distribution, 2) evaluate migratory connections and breeding season sympatry with North American pintails, and 3) determine if pintails used the same migration routes in fall as in spring. Most pintails (67%) migrated to the Kamchatka or Chukotka peninsulas in eastern Russia either directly from Japan or via Sakhalin Island, Russia. Remaining pintails primarily migrated to the Magadan region or Kolyma River Basin in eastern Russia via Sakhalin Island. The Chukotka Peninsula was the most common summer destination, with highest densities in the Anadyr Lowlands; a region also used by pintails that migrate from North America. One pintail migrated to St. Lawrence Island, Alaska, in spring and another briefly migrated to the western coast of Alaska in fall. Autumn migration routes generally mirrored spring migration although most pintails bypassed Sakhalin Island in fall. Compared to North American pintails, pintails that winter in Japan exhibited less variation in migration routes and breeding distribution, and nested at higher latitudes. In the Russian Far East there is no region with habitats comparable in extent to the ephemeral mid‐latitude wetlands of North America. Consequently, East Asian pintails mainly nest in arctic and sub‐arctic regions where annual consistency in wetlands promotes constancy in migration routes and breeding distribution. Breeding season sympatry between pintails from different continents results more from North American pintails migrating to eastern Russia than from Japanese pintails migrating to North America.     

Nitrogen deposition enhances Bromus tectorum invasion: biogeographic differences in growth and competitive ability between China and North America

Increased resource supply commonly facilitates invasion by exotic plants, raising concerns over atmospheric nitrogen (N) deposition; fast‐growing annual invaders may have exceptional abilities to outperform native perennials in response to N pulses. However, it remains unclear whether this advantage is due to growth differences or to shifts in competitive outcomes, and whether annual invaders are favored by N deposition in their introduced range over native range. We conducted an experiment to compare the growth and competitive ability of Bromus tectorum and its native perennial grasses either at three different N regimes or between China and North America. The soil used in this experiment was from mountain grasslands as a neutral growth medium. The total biomass of three natives from China and North America did not increase along the N deposition gradient. Nitrogen addition enhanced the growth of North American B. tectorum instead of Chinese B. tectorum. Nitrogen addition increased the competitive ability of B. tectorum, but had no effect on that of natives. North American B. tectorum was bigger and had greater competitive ability and root weight ratio than Chinese B. tectorum. In contrast, North American natives were less competitive than Chinese natives. There was a significantly positive correlation between the growth of B. tectorum grown alone and its competitive ability. These findings suggest that N deposition may enhance the B. tectorum invasion through disproportionally increasing the growth and maintaining inherent competitive advantages of North American B. tectorum, further increasing threats to introduced ranges. There were differences in the growth and competitive ability of B. tectorum and natives between China and North America, which explains why B. tectorum is a minor component at home and becomes a successful invader abroad.     

Development,characterization and cross-amplification of microsatellite markers for <Emphasis Type="Italic">Chrysolaena obovata</Emphasis>, an important Asteraceae from Brazilian Cerrado

Feral cattle residing in Chirikof Island, Alaska, are relatively distinct from breeds used in commercial production in North America. However, preliminary evidence suggested that they exhibit substantial genetic relationship with cattle from Yakutian region of Siberia. Thus, our objective was to further elucidate quantify the origins, admixture and divergence of the Chirikof Island cattle relative to cattle from Siberia and USA. Subject animals were genotyped at 15 microsatellite loci. Compared with Turano–Mongolian and North American cattle, Chirikof Island cattle had similar variation, with slightly less observed heterozygosity, fewer alleles per locus and a positive fixation index. Analysis of the genetic distances revealed two primary clusters; one that contained the North American breeds and the Kazakh White head, and a second that contained the Yakutian and Kalmyk breeds, and the Chirikof population. Thus, it is suggested that Chirikof Island cattle may be a composite of British breeds emanating from North America and Turano–Mongolian cattle. A potential founder effect, consistent with historical records of the Russian–American period, may contribute to the adaptation of the Chirikof Island cattle to their harsh high-latitude environment. Further study of adaptive mechanisms manifest by these cattle is warranted.