A Novel Approach for the Synthesis of seco C-Nucleoside Analogues

Abstract

The synthesis of 4-amino-3-(D-gluco- or D-galacto-pentitol-1.yl)-5-mercapto-1,2,4-triazoles and their conversion to the respective 6-methyl-3-(1,2,3,4,5-penta-O-acetyl-pentitol-1-yl)1,2,4-triazolo[3,4-b]1,3,4-thiadiazoles have been achieved. The vicinal coupling constants were used to deduce the favored conformations.     

Synthesis of Novel Pyrene-Bearing C-Nucleoside and Its Incorporation into Oligonucleotides

Abstract

Phosphoramidite of (1,2,4-triazol-1-yl)-4-[(4-pyren-1-ylbutyl)amino]-5-(2-O-methyl-5-dimethoxytrityl-β-D-ribofuranosyl)pyrimidine has been synthesized, incorporated into polypyrimidine oligoaucleotides, and studied for thier triplex forming capacity.     

The Synthesis of Enantiomerically Pure Pyrazolo[4,3-c]pyridine Carbarzbo C-Nucleoside

Abstract

The synthesis of (-)-3-[(1S,2S,3R,4R)-2,3-dihydroxy-4-(hydroxmethyl) cyclopentan-1-yl]-1H-pyrazolo[4,3-c]pyridme-4,6(5H,7H)-dione 3 was accomplished via enantiomerically pure carbocyclic 5-(β-D-ribofuranosyl)tetrazole 4.     

The Synthesis of Novel 5-Trifluoroethyl Ethers of Thymidine

Abstract

The syntheses of 5-(2, 2, 2-trifluoroethoxymethyl)-2′-deoxyuridine 13 and 5-bis (2, 2, 2-trifluoroethoxy)methyl-2′-deoxyuridine 16 starting from thymidine, are described.     

The Use of Crown Ethers in Peptide Chemistry – V. Solid-phase Synthesis of Peptides by the Fragment Condensation Approach using Crown Ethers as Non-covalent Protecting Groups

We have previously described the conditions by which peptide synthesis by the solid-phase fragment condensation approach can be carried out using crown ethers as non-covalent protection for the N^α -amino group. Here we demonstrate that the procedure can be extended to large, partially protected peptide fragments possessing free Lys and/or Arg residues. The first step was to ensure that complex formation on the side chain of amino acids was not detrimental to the methodology and exhibited the same solubility and coupling properties as N^α -complexed peptides. Thus, a model hexapeptide was synthesized using Fmoc chemistry containing Lys and Arg residues, which, when complexed with 18-Crown-6, was readily soluble in DCM and coupled quantitatively to a resin-bound tetrapeptide. Two tripeptides were then prepared, one containing a free Ser residue, the other free Tyr, to examine the possible occurrence of side reactions. After coupling using standard conditions only the former tripeptide exhibited the formation of the O-acylation by-product (5%). Another model hexapeptide containing Lys, Tyr, Ser and Asp protected with a TFA-stable adamantyl group was complexed with 18-Crown-6 and coupled to the resin-bound tetrapeptide with near quantative yield. Extending the length of the peptide to 21 and 40 residues, which represent sequences Gly⁵² to Leu⁷² (21-mer) and Pro³³ to Leu⁷² (40-mer) from Rattus norvegicus chaperonin 10 protein, respectively, resulted in partially protected fragments that were readily soluble in water, thus enabling purification by RP-HPLC. Complexation with 18-Crown-6 gave two highly soluble products that coupled to resin-board tetramer with 68% and 50% coupling efficiencies for the 21-mer and 40-mer, respectively. Treatment with 1% DIEA solutions followed by acidolytic cleavage and purification of the major product confirmed that the correct product had been formed, when analysed by amino acid analysis and ESI-MS. These results served to extend the methodology of non-covalent protection of large partially protected peptide fragments for the stepwise fragment condensation of polypeptides.     

Synthesis and Juvenile Hormone Activity of Some Terpenoid Phenyl Ethers

Thirty eight new compounds with juvenile hormone (JH) activity were synthesized and evaluated biologically on Bombyx mori L. Among them, the activities of 7,8-epoxy-4,8-dimethyl-1 -(p-ethylphenoxy)-3-undecene and 7,8-epoxy-4,8-dimethyl-l-(p-methylphenoxy)-3-undencene were proved to be more than two thousand times as high as that of the C₁₈-Cecropia JH (mixed isomers). Structure-activity relationship of these compounds was discussed.     

Gas-Liquid Chromatographic Separation of Chlorophenols and Determination of Pentachlorophenol as Methyl Ethers

Chlorophenols are readily converted to methyl ethers by the reaction with diazomethane. Mixtures of methyl ethers of mono-, di-, tri-, tetra- and pentachlorophenols can be separated completely by gas-liquid chromatography on silicone high vacuum grease and sodium alkyl-benzene sulfonate columns at 150~190°C. The peaks of chlorophenol methyl ethers are sharper than that of free chlorophenols. Pentachlorophenol and tetrachlorophenol in technical products and commercial herbicide formulations can be determined by internal standard method with dibutyl phthalate.     

Materials as morphogenetic guides in tissue engineering

Within native tissues cells are held within the extracellular matrix (ECM), which has a role in maintaining homeostasis, guiding development and directing regeneration. Efforts in tissue engineering have aimed to mimick the ECM to help guide morphogenesis and tissue repair. Studies have not only looked at ways to mimick the structure and characteristics of the ECM, but have also considered ways to reproduce its molecular properties including its bioadhesive character, proteolytic susceptibility and ability to bind growth factors.     

Revisiting Carbon Materials as Plasma-Facing Materials of a Fusion Reactor

Plasma Physics Reports - Carbon materials (C) are revisited to use as a plasma-facing material (PFM) of a fusion reactor. Characteristics of C concerned, such as erosion, redeposition, H retention,...     

Dielectric Materials Containing Active Dielectric-Metal Composite Nanoparticles as Double Negative Materials in the Visible

Plasmonics - In the visible spectral range, Mie resonance-based double negativity has still not been observed in all-dielectric metamaterials due to the lack of dielectrics with sufficiently high...     

蛋白质类医用高分子微生物合成的研究进展

蛋白质类医用高分子是一类重要的功能高分子材料,在生物医学领域有着广泛的应用。随着现代生物技术特别是分子生物学技术的发展,微生物合成医用高分子材料已成为可能。微生物合成除了大规模、低成本的特点外,还可对蛋白质高分子进行分子设计,从而赋予其新的材料性能,以满足不同的需要。该文综述了蛋白质类医用高分子（胶原与明胶、弹性蛋白、丝蛋白）微生物合成的研究进展,指出微生物合成的原理方法及应用现状,并对其发展前景进行了展望。     

Synthesis of the New Green Fluorescent Protein Chromophore Analogue Starting from a Cinnamic Aldehyde Derivative

Russian Journal of Bioorganic Chemistry - A novel derivative of green fluorescent protein chromophore (Z)-5-((E)-3-(4-hydroxyphenyl)allylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one was...     

Microbial Phospholipid Synthesis as a Marker for Microbial Protein Synthesis in the Rumen

Phosphate uptake into intracellular inorganic phosphorus and cellular phospholipids and the relationship between cell growth and phospholipid synthesis were studied with suspensions of washed ruminal bacteria in vitro with (33)P-phosphorus. It was shown that ruminal bacteria accumulated inorganic phosphate at a low rate when incubated without substrate. Upon the addition of substrate, the rate of inorganic phosphorus uptake into the cells increased markedly, and phospholipid synthesis and cell growth commenced. There was a highly significant relationship (r = 0.98; P < 0.01) between phospholipid synthesis and cell growth. The specific activity of the intracellular inorganic phosphorus did not equilibrate with phosphorus medium. When ruminal contents from sheep fed a high or low protein diet were incubated in vitro, the rate of (33)P incorporation into microbial phospholipids was higher for the high protein diet. Since there was a high relationship between phospholipid synthesis and growth, rumen contents were collected before and various times after feeding and incubated with (33)P-phosphorus in vitro. The short-term, zero time approach was used to measure the rate of microbial phospholipid synthesis in whole rumen contents. In these studies the average specific activity of the intracellular inorganic phosphorus was used to represent the precursor pool specific activity. Microbial phospholipid synthesis was then related to protein (N x 6.25) synthesis with appropriate nitrogen-to-phospholipid phosphorus ratios. Daily true protein synthesis in a 4-liter rumen was 185 g. This represents a rate of 22 g of protein synthesized per 100 g of organic matter digested. These data were also corrected for ruminal turnover. On this basis the rate of true protein synthesis in a 4-liter rumen was 16.1 g of protein per 100 g of organic matter digested. This value represents a 30-g digestible protein-to-Mcal digestible energy ratio which is adequate for growing calves and lambs.     

Synthesis of Oligopeptides as Polynucleotide Analogs

Abstract

Several dipeptides which have a uracil moiety in their side chains were designed as nucleotide analogs. Oligopeptides obtained from the dipeptides as monomer units were water-soluble, but exhibited no hypochromic effect with poly A or poly dA.

     

A Novel and Enantioselective Approach to the Synthesis of Cyclohexane Carbocyclic Nucleosides Starting from (-)-Carvone

Abstract

3,5-dihydroxy-4-(hydroxymethyl)-1-cyclohexanyl adenine has been synthesized starting from (-)-carvone. The adenine base was introduced via Mitsunobu reaction. Conformational analysis showed that the base still adopts the equatorial position at the expence of three axial substituents.     

Synthesis of Pyridazine Derivatives as Herbicides

Series of 3-chloro-6-phenoxy- and 3,6-bisphenoxypyridazines were prepared from 3,6-dichloropyridazine to be evaluated as herbicides. Certain thioethers were also prepared.     

Radioactivity as a Significant Energy Source in Prebiotic Synthesis

Radioactivity in the continental crust (due mainly to the isotopes ²³⁸U,²³⁵U, ²³²Th and ⁴⁰K), as a energysource for chemical evolution in the early Archean (between 3.5 and 4 Ga bp), is reviewed.The most important radioactive sourcein the continental crust is due to theproduction and accumulation of radioactivegases within the crust voids (porosity). Thestudy of such mechanism has allowed us toreach a deeper understanding about the nature of the radioactive source and to describe itsbehavior, particularly with regard to prebiotic chemical evolution. An effectivetotal energy of 3 × 10^{18 Ja -1} hasbeen obtained for a depth of 1 km, 4 Ga ago. If a depth of 30 km is taken, the obtained valueis almost equal to the UV solar energyradiation (<150 nm). Within thevoids the radioactive source of thecontinental crust played a relevant role inprebiotic synthesis. In uraniumdeposits of the same age, the role ofradiactivity must have been even more relevantin favoring chemical evolution.     

Isoxaben Inhibits the Synthesis of Acid Insoluble Cell Wall Materials In Arabidopsis thaliana

The effect of the herbicide isoxaben on the incorporation of radiolabeled glucose, leucine, uracil, and acetate into acid insoluble cell wall material, protein, nucleic acids, and fatty acids, respectively, was measured. Dichlobenil, cycloheximide, actinomycin D, and cerulenin, inhibitors of the incorporation of these precursors into these macromolecular components, functioned as expected, providing positive controls. The incorporation of radiolabeled glucose into an acid insoluble cell wall fraction was severely inhibited by isoxaben at nanomolar concentrations. Amitrole, fluridone, ethalfluralin, and chlorsulfuron, as well as cycloheximide, actinomycin D, and cerulenin did not inhibit incorporation of glucose into this fraction, ruling out a general nonspecific effect of herbicides on glucose incorporation. The evidence thus suggests that isoxaben is an extremely powerful and specific inhibitor of cell wall biosynthesis.     

Synthesis of fluorinated indoles as RNA analogues

Nucleoside analogues are chemical means to investigate hydrogen bonds, base stacking, and solvation as the three predominant forces that are responsible for the stability of secondary structure of nucleic acids. To obtain deeper insight into the contributions of these interactions to RNA stability apart from the ones exerted by the predominant nucleosides we decided to synthesize some novel nucleic acid analogues where the nucleobases are replaced by fluoroindoles. Fluorinated indoles can be compared to fluorinated benzimidazoles to determine the role of nitrogen in five membered ring system. The synthesis of fluoroindole ribonucleosides is described here.