The effect of sodium bicarbonate supplementation on growth and biochemical composition of marine microalgae cultures

The addition of bicarbonate (NaHCO₃; 0, 1, or 2 g L^?1) to microalgal cultures has been evaluated for two species (Tetraselmis suecica and Nannochloropsis salina) in respect of growth and biochemical composition. In batch cultures, addition of bicarbonate (1 g L^?1) resulted in significantly (P?<?0.05) higher final mean cell abundances for both species. No differences in specific growth rates (SGRs) were recorded for T. suecica between treatments; however, increasing bicarbonate addition decreased SGR values in N. salina cultures. Bicarbonate addition (1 g L^?1) significantly improved nitrate utilisation from the external media and photosynthetic efficiency (F _v /F _m ) in both species. For both T. suecica and N. salina, bicarbonate addition significantly increased the cellular concentrations of total pigments (3,432–3,587 and 19–37 fg cell^?1, respectively) compared to cultures with no additional bicarbonate (1,727 and 11 fg cell^?1, respectively). Moreover, final concentrations of total cellular fatty acids in T. suecica and N. salina cultures supplemented with 2 g L^?1 bicarbonate (7.6?±?1.2 and 1.8?±?0.1 pg cell^?1, respectively) were significantly higher than those cells supplemented with 0 or 1 g L^?1 bicarbonate (3.2–3.5 and 0.9–1.0 pg cell^?1, respectively). In nitrate-deplete cultures, bicarbonate addition caused species-specific differences in the rate of cellular lipid production, rates of change in fatty acid composition and final lipid levels. In summary, the addition of sodium bicarbonate is a viable strategy to increase cellular abundance and concentrations of pigments and lipids in some microalgae as well as the rate of lipid accumulation in nitrate-deplete cultures.     

The effects of light intensity on the growth of Japanese Gambierdiscus spp. (Dinophyceae)

Marine toxic dinoflagellates of the genus Gambierdiscus are the causative agents of ciguatera fish poisoning (CFP), a form of seafood poisoning that is widespread in tropical, subtropical and temperate regions worldwide. The distributions of Gambierdiscus australes, Gambierdiscus scabrosus and two phylotypes of Gambierdiscus spp. type 2 and type 3 have been reported for the waters surrounding the main island of Japan. To explore the bloom dynamics and the vertical distribution of these Japanese species and phylotypes of Gambierdiscus, the effects of light intensity on their growth were tested, using a photoirradiation-culture system. The relationship between the observed growth rates and light intensity conditions for the four species/phylotypes were formulated at R > 0.92 (p < 0.01) using regression analysis and photosynthesis-light intensity (P-L) model. Based on this equation, the optimum light intensity (L_max) and the semi-optimum light intensity range (L_s-opt) that resulted in the maximum growth rate (μ_max) and ≥80% μ _max values of the four species/phylotypes, respectively, were as follows: (1) the L_max and L_s-opt of G. australes were 208 μmol photons m⁻² s⁻¹ and 91–422 μmol photons m⁻² s⁻¹, respectively; (2) those of G. scabrosus were 252 and 120–421 μmol photons m⁻² s⁻¹, respectively; (3) those of Gambierdiscus sp. type 2 were 192 and 75–430 μmol photons m⁻² s⁻¹, respectively; and (4) those of Gambierdiscus sp. type 3 were ≥427 and 73–427 μmol photons m⁻² s⁻¹, respectively. All four Gambierdiscus species/phylotypes required approximately 10 μmol photons m⁻² s⁻¹ to maintain growth. The light intensities in coastal waters at a site in Tosa Bay were measured vertically at 1 m intervals once per season. The relationships between the observed light intensity and depth were formulated using Beer’s Law. Based on these equations, the range of the attenuation coefficients at Tosa Bay site was determined to be 0.058–0.119 m⁻¹. The values 1700 μmol photons m⁻² s⁻¹, 500 μmol photons m⁻² s⁻¹, and 200 μmol photons m⁻² s⁻¹ were substituted into the equations to estimate the vertical profiles of light intensity at sunny midday, cloudy midday and rainy midday, respectively. Based on the regression equations coupled with the empirically determined attenuation coefficients for each of the four seasons, the ranges of the projected depths of L_max and L_s-opt for the four Gambierdiscus species/phylotypes under sunny midday conditions, cloudy midday conditions, and rainy midday conditions were 12–38 m and 12–54 m, 1–16 m and 1–33 m, and 0 m and 0–16 m, respectively. These results suggest that light intensity plays an important role in the bloom dynamics and vertical distribution of Gambierdiscus species/phylotypes in Japanese coastal waters.     

Impact of light quality on a native Louisiana Chlorella vulgaris/Leptolyngbya sp. co‐culture

Light effect on cultures of microalgae has been studied mainly on single species cultures. Cyanobacteria have photosynthetic pigments that can capture photons of wavelengths not available to chlorophylls. A native Louisiana microalgae (Chlorella vulgaris ) and cyanobacteria (Leptolyngbya sp.) co‐culture was used to study the effects of light quality (blue–467 nm, green–522 nm, red–640 nm and white–narrow peak at 450 nm and a broad range with a peak at 550 nm) at two irradiance levels (80 and 400 μmol m^?2 s^?1) on the growth, species composition, biomass productivity, lipid content and chlorophyll‐a production. The co‐culture shifted from a microalgae dominant culture to a cyanobacteria culture at 80 μmol m^?2 s^?1. The highest growth for the cyanobacteria was observed at 80 μmol μmol m^?2 s^?1 and for the microalgae at 400 μmol m^?2 s^?1. Red light at 400 μmol m^?2 s^?1 had the highest growth rate (0.41 d^?1), biomass (913 mg L^?1) and biomass productivity (95 mg L^?1 d^?1). Lipid content was similar between all light colors. Green light had the highest chlorophyll‐a content (1649 μg/L). These results can be used to control the species composition of mixed cultures while maintaining their productivity.     

Effect of high ferric ion concentrations on total lipids and lipid characteristics of Tetraselmis subcordiformis,Nannochloropsis oculata and Pavlova viridis

Microalgae as sources for biodiesel production have been widely investigated. Microalgae biomass, lipid content and fatty acid profiles of microalgae are limiting factors for the cost-effective production of biodiesel. In this paper, the effects of high ferric ion concentrations on three species of microalgae (Tetraselmis subcordiformis, Nannochloropsis oculata and Pavlova viridis) were studied. The microalgae were cultured in different concentrations (1.2?×?10^?2, 1.2?×?10^?1, 1.2 and 12 mmol L^?1) of ferric ion. The growth, lipid content and fatty acid profiles of the three microalgae were analysed. When algae were cultured in 1.2 mmol L^?1 ferric ion for 10 days, the final cell density and specific growth rates of T. subcordiformis, N. oculata and P. viridis decreased significantly (p?<?0.05), and the total lipid contents of the microalgae, 33.72, 37.34 and 29.48 % (dry mass) in T. subcordiformis, N. oculata and P. viridis, respectively, were higher than those at other concentrations. The neutral lipid/total lipid ratios of the three microalgae species increased with increasing ferric ion concentration. Neutral lipids accounted for 50.75, 48.37 and 46.59 % of the total lipid in T. subcordiformis, N. oculata and P. viridis, respectively, when cultured in 12 mmol L^?1 ferric ion. The proportions of saturated fatty acids in all three species cultured in 12 mmol L^?1 ferric ion were significantly higher than those cultured in lower ferric ion concentrations. An optimum ferric ion concentration can improve the properties of T. subcordiformis, N. oculata and P. viridis as sources for biodiesel.     

Physiological variables determined under laboratory conditions may explain the bloom of Aphanizomenon ovalisporum in Lake Kinneret

Response of Aphanizomenon ovalisporum to certain environmental parameters was studied to gain a better understanding of the conditions which may have stimulated its autumnal bloom in Lake Kinneret. Optimal temperature for A. ovalisporum growth was 26–30?°C, resulting in growth rates of 0.2–0.3?day^?1, similar to those observed in the lake. Maximal rate of CO₂ fixation (assimilation numbers of 6–8?μg?C?μg^?1?Chl?h^?1) was obtained at low irradiances (I _k of 40–100?μmol?photons?m^?2?s^?1), 200?μM Pi and low N:Pi ratios. Growth was strongly affected by phosphorus availability, reaching a maximum at Pi concentrations above 40?μM. The high demand for phosphorus was indicated by an increase in alkaline phosphatase activity. The relative abundance of Pi in the cells increased by 4-fold in Pi-rich compared with Pi-limited cultures. Uptake of Pi was faster in Pi-depleted compared with Pi-sufficient cells. Maximal photosynthetic rates and K_1/2(HCO₃ ^?) were 140–220?μmol?O₂?mg^?1?Chl?h^?1 and 10–24?μM, respectively. At pH 7.0 the K _1/2(CO₂) was 2.2 and fell to 0.04?μM at pH 9.0. These data indicated that A. ovalisporum is a HCO₃ ^? user, and can explain its high photosynthetic rates during the bloom, under high pH and low dissolved CO₂ conditions. Na⁺ concentrations of about 5?mM were essential for A. ovalisporum growth at high pH approaching values in the lake.     

Whole-cell hydroxylation of n-octane by Escherichia coli strains expressing the CYP153A6 operon

CYP153A6 is a well-studied terminal alkane hydroxylase which has previously been expressed in Pseudomonas putida and Escherichia coli by using the pCom8 plasmid. In this study, CYP153A6 was successfully expressed in E. coli BL21(DE3) by cloning the complete operon from Mycobacterium sp. HXN-1500, also encoding the ferredoxin reductase and ferredoxin, into pET28b(+). LB medium with IPTG as well as auto-induction medium was used to express the proteins under the T7 promoter. A maximum concentration of 1.85?μM of active CYP153A6 was obtained when using auto-induction medium, while with IPTG induction of LB cultures, the P450 concentration peaked at 0.6–0.8?μM. Since more biomass was produced in auto-induction medium, the specific P450 content was often almost the same, 0.5–1.0?μmol P450 g _DCW ^?1 , for both methods. Analytical scale whole-cell biotransformations of n-octane were conducted with resting cells, and it was found that high P450 content in biomass did not necessarily result in high octanol production. Whole cells from LB cultures induced with IPTG gave higher specific and volumetric octanol formation rates than biomass from auto-induction medium. A maximum of 8.7?g octanol L _BRM ^?1 was obtained within 24?h (0.34?g L _BRM ^?1 ?h^?1) with IPTG-induced cells containing only 0.20?μmol P450 g _DCW ^?1 , when glucose (22?g L _BRM ^?1 ) was added for cofactor regeneration.     

Outdoor pilot-scale production of Botryococcus braunii in panel reactors

In this paper, the outdoor production of Botryococcus braunii in pilot-scale panel reactors (0.4?m³) is studied under uncontrolled conditions at a location close to the Atacama Desert (Chile). Discontinuous experiments were performed on different dates to determine the feasibility of the culture and the influence of environmental conditions on the system yield. Data showed that solar radiation is a major parameter in determining system yield, the average irradiance inside the culture determining both the growth rate and biomass productivity. A maximum specific growth rate of 0.09?day^?1 and biomass productivity of 0.02?g?L^?1?day^?1 (dry weight) were measured in discontinuous mode, at an average irradiance of 60?μE?m^?2?s^?1. With respect to lipids, a productivity of 2.5?mg?L^?1?day^?1 was obtained under favourable growth conditions; no accumulation of lipids at the stationary phase was observed. To confirm this behaviour, a semicontinuous culture was performed at 0.04?day^?1 in a larger reactor (1?m³). In this experiment, the biomass concentration and productivity was 0.3?g?L^?1 and 0.015?g?L^?1?day^?1, respectively. The lipid content and productivity was 15.6% and 2.4?mg?L^?1?day^?1, respectively, the mean average irradiance inside the reactor being 60?μmol photons?m^?2?s^?1. The light path of the reactor determines the light availability, thus determining also the biomass concentration and productivity of the reactor once the dilution rate is fixed. Experimentally, biomass productivity of 0.015?g?L^?1?day^?1 was determined for a light path of 0.15?m, but this can be increased by more than three times for a light path of 0.1?m. These data confirm that this alga can be produced outdoors in a secure form, the culture yield improving when optimal conditions are applied, the data reported here establishing the starting point for the development of the process.     

N2O and CH4 fluxes in undisturbed and burned holm oak, scots pine and pyrenean oak forests in central Spain

We investigated N₂O and CH₄ fluxes from soils of Quercus ilex, Quercus pyrenaica and Pinus sylvestris stands located in the surrounding area of Madrid (Spain). The fluxes were measured for 18?months from both mature stands and post fire stands using the static chamber technique. Simultaneously with gas fluxes, soil temperature, soil water content, soil C and soil N were measured in the stands. Nitrous oxide fluxes ranged from ?11.43 to 8.34?μg N₂O–N?m^?2?h^?1 in Q.ilex, ?7.74 to 13.52?μg N₂O–N?m^?2?h^?1 in Q. pyrenaica and ?28.17 to 21.89?μg N₂O–N?m^?2?h^?1 in P. sylvestris. Fluxes of CH₄ ranged from ?8.12 to 4.11?μg CH₄–C?m^?2?h^?1 in Q.ilex, ?7.74 to 3.0?μg CH₄–C m^?2?h^?1 in Q. pyrenaica and ?24.46 to 6.07?μg CH₄–C?m^?2?h^?1 in P. sylvestris. Seasonal differences were detected; N₂O fluxes being higher in wet months whereas N₂O fluxes declined in dry months. Net consumption of N₂O was related to low N availability, high soil C contents, high soil temperatures and low moisture content. Fire decreased N₂O fluxes in spring. N₂O emissions were closely correlated with previous day’s rainfall and soil moisture. Our ecosystems generally were a sink for methane in the dry season and a source of CH₄ during wet months. The available water in the soil influenced the observed seasonal trend. The burned sites showed higher CH₄ oxidation rates in Q. ilex, and lower rates in P. sylvestris. Overall, the data suggest that fire alters both N₂O and CH₄ fluxes. However, the magnitude of such variation depends on the site, soil characteristics and seasonal climatic conditions.     

Optimization of cultivation conditions for fatty acid composition and EPA production in the eustigmatophycean microalga Trachydiscus minutus

We determined the effects of cultivation conditions (nitrogen source, salinity, light intensity, temperature) on the composition of polyunsaturated fatty acids (PUFAs) and the production of eicosapentaenoic acid (EPA) in the laboratory cultured eustigmatophycean microalga, Trachydiscus minutus. T. minutus was capable of utilizing all nitrogen compounds tested (potassium nitrate, urea, ammonium nitrate, ammonium carbonate) with no differences in growth and only minor differences in fatty acid (FA) compositions. Ammonium carbonate was the least appropriate for lipid content and EPA production, while urea was as suitable as nitrates. Salinity (0.2 % NaCl) slightly stimulated EPA content and inhibited growth. Increasing salinity had a marked inhibitory effect on growth and PUFA composition; salinity at or above 0.8 % NaCl was lethal. Both light intensity and temperature had a distinct effect on growth and FA composition. The microalga grew best at light intensities of 470–1,070 μmol photons m^?2 s^?1 compared to 100 μmol photons m^?2 s^?1, and at 28 °C; sub-optimal temperatures (20, 33 °C) strongly inhibited growth. Saturated fatty acids increased with light intensity and temperature, whereas the reverse trend was found for PUFAs. Although the highest level of EPA (as a proportion of total FAs) was achieved at a light intensity of 100 μmol photons m^?2 s^?1 (51.1?± 2.8 %) and a temperature of 20 °C (50.9?±?0.8 %), the highest EPA productivity of about 30 mg L^?1?day^?1 was found in microalgae grown at higher light intensities, at 28 °C. Overall, for overproduction of EPA in microalgae, we propose that outdoor cultivation be used under conditions of a temperate climatic zone in summer, using urea as a nitrogen source.     

Three-dimensional spatial patterns of trace gas concentrations in baseflow-dominated agricultural streams: implications for surface–ground water interactions and biogeochemistry

Small streams that drain agricultural landscapes have come under close scrutiny as potentially significant indirect sources of greenhouse gases (GHGs) to the atmosphere. By exploring the stream-ground water connection in three dimensional space (horizontally and vertically beneath the stream channel, and longitudinally along the stream corridor) our results show (1) ground water can be a significant source of greenhouse gases to streams draining agricultural watersheds with concentrations in excess of atmospheric equilibrium by 221?μmol?C?L^?1 carbon dioxide, 0.64?μmol?C?L^?1 methane, and 0.65?μmol?N?L^?1 nitrous oxide (N₂O); (2) changes in the stream-ground water connection can create seemingly erratic patterns in GHG concentrations over short longitudinal distances (order of meters); (3) soil-stream interfaces are hotspots for denitrification and methanogenesis; however, no significant N₂O production was observed at such an interface under a riparian forest; and (4) nitrate (NO₃ ^?) and N₂O can be preserved as electron acceptors in oxic ground waters draining agriculture landscapes; hence, soil nitrification was the major source of N₂O to stream water, with a legacy in ground water dating back to the 1960s; N₂O tracked the seepage of NO₃ ^? into surface waters. In this study, we demonstrate the utility of detailed measurements of multiple trace gases towards revealing spatial and temporal patterns of surface–ground water interactions and biogeochemistry across several small baseflow-dominated stream ecosystems in central Wisconsin, USA.     

Subcellular Localization and Kinetic Characterization of a Gill (Na+, K+)-ATPase from the Giant Freshwater Prawn Macrobrachium rosenbergii

The stimulation by Mg²⁺, Na⁺, K⁺, NH₄ ⁺, and ATP of (Na⁺, K⁺)-ATPase activity in a gill microsomal fraction from the freshwater prawn Macrobrachium rosenbergii was examined. Immunofluorescence labeling revealed that the (Na⁺, K⁺)-ATPase α-subunit is distributed predominantly within the intralamellar septum, while Western blotting revealed a single α-subunit isoform of about 108 kDa M _r. Under saturating Mg²⁺, Na⁺, and K⁺ concentrations, the enzyme hydrolyzed ATP, obeying cooperative kinetics with V _M = 115.0 ± 2.3 U mg^?1, K _0.5 = 0.10 ± 0.01 mmol L^?1. Stimulation by Na⁺ (V _M = 110.0 ± 3.3 U mg^?1, K _0.5 = 1.30 ± 0.03 mmol L^?1), Mg²⁺ (V _M = 115.0 ± 4.6 U mg^?1, K _0.5 = 0.96 ± 0.03 mmol L^?1), NH₄ ⁺ (V _M = 141.0 ± 5.6 U mg^?1, K _0.5 = 1.90 ± 0.04 mmol L^?1), and K⁺ (V _M = 120.0 ± 2.4 U mg^?1, K _M = 2.74 ± 0.08 mmol L^?1) followed single saturation curves and, except for K⁺, exhibited site–site interaction kinetics. Ouabain inhibited ATPase activity by around 73 % with K _I = 12.4 ± 1.3 mol L^?1. Complementary inhibition studies suggest the presence of F₀F₁–, Na⁺-, or K⁺-ATPases, but not V(H⁺)- or Ca²⁺-ATPases, in the gill microsomal preparation. K⁺ and NH₄ ⁺ synergistically stimulated enzyme activity (≈25 %), suggesting that these ions bind to different sites on the molecule. We propose a mechanism for the stimulation by both NH₄ ⁺, and K⁺ of the gill enzyme.     

Characterization of cell growth and starch production in the marine green microalga Tetraselmis subcordiformis under extracellular phosphorus-deprived and sequentially phosphorus-replete conditions

Microalgal starch is a potential feedstock for biofuel production. Nutrient stress is widely used to stimulate starch accumulation in microalgae. Cell growth and starch accumulation in the marine green microalga Tetraselmis subcordiformis were evaluated under extracellular phosphorus deprivation with initial cell densities (ICD) of 1.5, 3.0, 6.0, and 9.0?×?10⁶ cells mL^?1. The intracellular stored phosphorus supported cell growth when extracellular phosphorus was absent. The maximum starch content of 44.1 % was achieved in the lowest ICD culture, while the maximum biomass productivity of 0.71 g L^?1 day^?1, starch concentration of 1.6 g L^?1, and starch productivity of 0.30 g L^?1 day^?1 were all obtained in the culture with the ICD of 3.0?×?10⁶ cells mL^?1. Appropriate ICD could be used to regulate the intracellular phosphorus concentration and maintain adequate photosynthetic activity to achieve the highest starch productivity, along with biomass and starch concentration. The recovery of phosphorus-deprived T. subcordiformis in medium containing 0.5, 1.0, or 6.0 mM KH₂PO₄ was also tested. Cell growth and starch accumulation ability could be recovered completely. A phosphorus pool in T. subcordiformis was shown to manipulate its metabolic activity under different environmental phosphorus availability. Though lower starch productivity and starch content were achieved under phosphorus deprivation compared with nitrogen- or sulfur-deprived conditions, the higher biomass and starch concentration make T. subcordiformis a good candidate for biomass and starch production under extracellular phosphorus deprivation.     

Enhanced Efficiency of In Vitro Rootstock Micro-propagation Using Silica-Based Nanoparticles and Plant Growth Regulators in Myrobalan 29C (Prunus cerasifera L.)

Different experiments were conducted to establish and optimize an efficient in vitro micropropagation protocol for Myrobalan 29C rootstocks. Disinfection of initial explants with AgNPs (2.5%) reduced the needed amount of NaClO (5.0%) by half. The highest rates of induced active buds were obtained in the DKW (90.63%), MS (86.67%), modified MS (82.22%), and WPM (78.15%) culture media supplemented with BAP (2.22 μmol L^?1)?+?GA₃ (2.88 μmol L^?1)?+?IBA (0.05 μmol L^?1)?+?Fe-EDDHA (228.72 μmol L^?1). The highest quality of the proliferated shoots (5.0) was also achieved using DKW medium. Inclusion of GA₃ (5.76 μmol L^?1), Fe-EDDHA (114.36–228.72 μmol L^?1), or BAP (2.22 μmol L^?1) were also able to enhance the rate of shoot multiplication. Compared to the agar-solidified culture system, the established shoots proliferated more efficiently when immersed by bioreactor in the liquid DKW culture medium on a regular basis. Exogenous application of silica-based nanoparticles (NPs) including the chemically synthesized silica NPs (TSiO₂ NPs, 1.0 ppm), rice husk derived biogenic silica NPs (RSiO₂ NPs, 10.0 ppm), or amine modified silica NPs (ASiO₂ NPs, 10.0 ppm) to the multiplication medium increased the number of regenerated lateral shoots by 520%, 360%, and 349%, respectively. Proliferated shoots with well-developed root system were obtained from the rooting medium supplemented with 19.68 μmol L^?1 IBA. Our results indicated that the rootstocks of Myrobalan 29C could be efficiently propagated under in vitro condition providing proper culture medium and optimal concentrations of additives and plant growth regulators were adopted.

     

Rapid Biomass Quality Determination of Corn Stover Using Near-Infrared Reflectance Spectroscopy

Near-infrared reflectance spectroscopy (NIRS) has been used extensively in the forage industry for rapid measurement of forage constituents and could be useful for determining quality of biomass feedstocks at the point of delivery. In previous work, we developed an assay that partitions feedstock carbohydrates based on their availability to be converted to fermentable sugars, including non-structural carbohydrates (C _N), biochemically available carbohydrates (C _B) with an associated first-order availability rate constant (k _B), and unavailable carbohydrates (C _U ). Additional quality parameters measured included neutral detergent lignin (NDL), total available carbohydrates (C _A), and total carbohydrates (C _T). We evaluated the variability of biomass quality parameters in a set of corn stover samples and developed calibration equations for determining parameter values using NIRS. Fifty-two corn stover samples harvested in Iowa and Wisconsin in 2005 and 2006 were analyzed using a high-throughput assay for determining feedstock quality for biochemical conversion. Non-structural carbohydrates ranged from 84 to 155?g?kg^?1 dry matter (DM); C _B ranged from 354 to 557?g?kg^?1 DM; k _B ranged from 0.199 to 0.330?h^?1; C _A ranged from 463 to 699?g?kg^?1 DM, and NDL ranged from 32 to 74?g?kg^?1 DM. Significant differences (P?<?0.0001) among samples were observed for all parameters, except k _B. Near-infrared reflectance spectroscopy calibration equations were developed for C _N, C _B, C _A, C _U , C _T, and NDL. It was not possible to generate a meaningful calibration equation for k _B. There is significant variability within the corn stover population for several key quality-related carbohydrate and lignin constituents which can be predicted reliably using NIRS.     

Use of real-time QPCR in biokinetics and modeling of two different ammonia-oxidizing bacteria growing simultaneously

A real-time quantitative polymerase chain reaction (QPCR) was used to evaluate biokinetic coefficients of Nitrosomonas nitrosa and N. cryotolerans clusters growing simultaneously in a batch mode of ammonia oxidation. The mathematical models based on Monod equation were employed to describe the competitive relationship between these clusters and were fitted to experimental data to obtain biokinetic values. The maximum growth rates (μ _m), half-saturation coefficients (K _S), microbial yields (Y) and decay coefficients (k _d) of N. nitrosa and N. cryotolerans were 1.77 and 1.21 day^?1, 23.25 and 23.06 mg N·L^?1, 16 × 10⁸ and 1 × 10⁸ copies·mg N^?1, 0.26 and 0.20 day^?1, respectively. The estimated coefficients were applied for modeling continuous operations at various hydraulic retention times (HRTs) with an influent ammonia concentration of 300 mg N·L^?1. Modeling results revealed that ammonia oxidation efficiencies were achieved 55–98 % at 0.8–10 days HRTs and that the system was predicted to be washed out at HRT of 0.7 days. Overall, use of QPCR for estimating biokinetic coefficients of the two AOB cluster growing simultaneously by use of ammonia were successful. This idea may open a new direction towards biokinetics of ammonia oxidation in which respirometry tests are usually employed.     

Interaction of benthic microalgae and macrofauna in the control of benthic metabolism, nutrient fluxes and denitrification in a shallow sub-tropical coastal embayment (western Moreton Bay, Australia)

Benthic biogeochemistry and macrofauna were investigated six times over 1 year in a shallow sub-tropical embayment. Benthic fluxes of oxygen (annual mean ?918 μmol O₂ m^?2 h^?1), ammonium (NH₄ ⁺), nitrate (NO₃ ^?), dissolved organic nitrogen, dinitrogen gas (N₂), and dissolved inorganic phosphorus were positively related to OM supply (N mineralisation) and inversely related to benthic light (N assimilation). Ammonium (NH₄ ⁺), NO₃ ^? and N₂ fluxes (annual means +14.6, +15.9 and 44.6 μmol N m^?2 h^?1) accounted for 14, 16 and 53 % of the annual benthic N remineralisation respectively. Denitrification was dominated by coupled nitrification–denitrification throughout the study. Potential assimilation of nitrogen by benthic microalgae (BMA) accounted for between 1 and 30 % of remineralised N, and was greatest during winter when bottom light was higher. Macrofauna biomass tended to be highest at intermediate benthic respiration rates (?1,000 μmol O₂ m^?2 h^?1), and appeared to become limited as respiration increased above this point. While bioturbation did not significantly affect net fluxes, macrofauna biomass was correlated with increased light rates of NH₄ ⁺ flux which may have masked reductions in NH₄ ⁺ flux associated with BMA assimilation during the light. Peaks in net N₂ fluxes at intermediate respiration rates are suggested to be associated with the stimulation of potential denitrification sites due to bioturbation by burrowing macrofauna. NO₃ ^? fluxes suggest that nitrification was not significantly limited within respiration range measured during this study, however comparisons with other parts of Moreton Bay suggest that limitation of coupled nitrification–denitrification may occur in sub-tropical systems at respiration rates exceeding ?1,500 μmol O₂ m^?2 h^?1.     

Endophytic fungi from Combretum leprosum with potential anticancer and antifungal activity

The recent increase in human diseases and cancers requires new drugs to combat them. Sources have been found in rare microorganisms, those from extreme habitats, and from endophytes. In this study, the biological activity of endophytic fungi associated with the Brazilian medicinal plant Combretum leprosum was assessed. Cytotoxic and antiproliferative effects were evaluated using seven human cancer cells lines (HeLa, ECV304, B16F10, J744, P388, Jurkat and k562). In addition the minimum inhibitory concentration (MIC) against pathogenic human fungal was determined using four Candida species and the filamentous fungi Cryptococcus neoformans and Trichophyton rubrum. A compound from extracts of phylotype Aspergillus oryzae CFE108 exhibited the most significant cytotoxicity effect against histiocytic sarcoma J774 (IC₅₀ of 0.80 μg?mL^?1), leukemia Jurkat (IC₅₀ of 0.89 μg?mL^?1), bladder carcinoma ECV304 (IC₅₀ of 3.08 μg?mL^?1) and cervical cancer HeLa (IC₅₀ of 2.97 μg?mL^?1). The extract from phylotypes Fusarium oxysporum CFE177 displayed antifungal activity and inhibited the growth of Candida glabrata (4 μg?mL^?1) as well as that of C. neoformans and T. rubrum with the lowest MIC being 62.5 μg?mL^?1. In addition, the fractions from A. oryzae CFE108 showed marked morphological activity (rounding up) on endothelial cells (tEnd.1 cells), which is indicative of potential antivascular activity. Our results indicate that the endophytes associated with this medicinal plant may be a source of novel drugs.     

Sea ice microbial dynamics over an annual ice cycle in Prydz Bay, Antarctica

Microbial community dynamics within the fast sea ice of Prydz Bay (68°S?78°E) were investigated over an annual cycle at two sites (1 and 3?km offshore) between April and November 2008. There are few long-term sea ice studies, and few that cover the phase of winter darkness when autotrophic processes are curtailed. Mean chlorophyll a concentrations in the ice column ranged between 0.76 and 44.8?μg?L^?1 at the 1-km site (Site 1) and 3.11–144.6?μg?L^?1 at the 3-km site (Site 2). Highest chlorophyll a usually occurred at the base of the ice. Bacterial concentrations ranged between 0.30 and 2.08?×?10⁸?cells?L^?1, heterotrophic nanoflagellates (HNAN) between 0.21?×?10⁵ and 2.98?×?10⁵?cells?L^?1 and phototrophic nanoflagellates (PNAN) 0–1.06?×?10⁵?cells?L^?1. While HNAN occurred throughout the year, PNAN were largely absent in winter. Dinoflagellates were a conspicuous and occasionally an abundant element of the community (maximum 17,460?cells?L^?1), while ciliates were sparse. The bacterial community showed considerable morphological diversity with a dominance of filamentous forms. Bacterial production continued throughout the year ranging between 0 and 22.92?μg?C?L^?1?day^?1 throughout the ice column. Lowest rates occurred between late June and early August. The sea ice sustained an active and diverse microbial community through its annual extent. The data suggest that during winter darkness the microbial community is dominated by heterotrophic processes, sustained by a pool of dissolved organic carbon.     

Carbon and nitrogen mass balance during flue gas treatment with Dunaliella salina cultures

The biotreatment of flue gases with algae cultures is a promising option to sequestrate CO₂, yet the emission of other greenhouse gases (GHG) from the cultures can hamper their environmental benefit. Quantitative data on the sequestration potential for CO₂ and NO _x in relation to the direct production of CH₄ and N₂O are urgently required. The present study assessed the flows of carbon (C) and nitrogen (N) through cultures of the green alga Dunaliella salina, supplied with biodiesel flue gas, by means of mass balancing. D. salina was grown in artificially lighted, field- (42-L bubble column reactor) and laboratory-scale cultures (23 °C, pH 7.5). In the bubble column reactor, algae grew with an average specific growth rate of 0.237 day^?1 under flue gas supplementation (6.3 % (v/v) CO₂, 1.2 ppmv NO _x ), and CO₂ was retained to 39 % in the system. The specific sequestration rate for CO₂ was low, with 0.13 g CO₂ L^?1 day^?1. Cultures emitted up to 13.03 μg CH₄ L^?1 day^?1 and 4261 μg N₂O L^?1 day^?1. The moderate retention of NO _x -N was outweighed by emissions of N₂O-N, and total N in the system decreased by 15.48 % during the 9-day trial. Results suggest that GHG production was mainly the outcome of anaerobic microbial processes and their emission was lower in pre-sterilized cultures. Under the tested conditions, up to six times more CO₂ equivalents were emitted during flue gas treatment. Therefore, the direct GHG emissions of algae culture systems, intended for flue gas treatment (i.e. open ponds) need to be reviewed critically.     

Seasonal Growth and Photosynthetic Performance of the Antarctic Macroalga Desmarestia menziesii (Phaeophyceae) Cultivated under Fluctuating Antarctic Daylengths

Growth, photosynthesis, dark respiration and pigment contents were monitored in adult sporophytes of the Antarctic brown alga Desmarestia menziesii J. Agardh grown under fluctuating Antarctic daylength conditions. Growth rates were closely coupled to daylength variations with values varying from 0.05% d^?1 in winter condition (July-August) to 0.5% d^?1 in early summer (December). Photosynthetic pigments had maximum values of 1.8 mg g^?1 FW (chlorophyll a), 0.4 mg g^?1 FW (chlorophyll c) and 0.9 mg g^?1 FW (fucoxanthin) in summer. These changes were also closely related to individual size and biomass of the plants. Net photosynthesis (P_max), on a fresh weight basis, showed a clear seasonal pattern with highest rates of 25μmol O₂ g^?1 FW h^?1 in October and minima close to 9μmol O₂ g^?1 FW h^?1 in April. Dark respiration was high in spring (13μmol O₂ g^?1 FW h^?1) approximately coinciding with growth peaks. Likewise, photosynthetic efficiency (α) and the initial saturating light point of photosynthesis (l_k) increased significantly in spring [1.3 μimol O₂ g^?1 FW h^?1 (μmol m^?2 s^?1)^?1 and 26μmol photons m^?2 s^?1, respectively]. In the case of α, no significant differences between fresh weight and Chl a based rates were found. The results of the present study are the first that demonstrate seasonality of physiological parameters in D. menziesii sporophytes and confirm also that phenology and physiology of macroalgae can be simulated in the laboratory. On the other hand this study adds new elements to the explanation of the life strategy of D. menziesii, in particular that algal growth and photosynthesis occur under a programmed seasonal pattern.