Growth and nitrate uptake properties of plants grown at different relative rates of nitrogen supply. II. Activity and affinity of the nitrate uptake system in Pisum and Lemna in relation to nitrogen availability and nitrogen demand

Abstract Net nitrate uptake rates were measured and the kinetics calculated in non-nodulated Pisum sativum L. cv. Marma and Lemna gibba L. adapted to constant relative rates of nitrate-N additions (R_A), ranging from 0.03 to 0.27 d^?1 for Pisum and from 0.05 to 0.40 d^?1 for Lemna, V_max of net nitrate uptake (measured in the range 10 to 100 mmol m^?3 nitrate, i.e. ‘system I’) increased with R_A in the growth limiting range but decreased when R_A exceeded the relative growth rate (RGR), K_m was not significantly related to changes in R_A. On the basis of previous ¹³N-flux experiments, it is concluded that the differences in V_max at growth limiting R_A are attributable to differences in influx rates. Linear relationships between V_max and tissue nitrogen concentrations were obtained in the growth limiting range for both species, and extrapolated intercepts relate well with the previously defined minimal nitrogen concentrations for plant growth (Oscarson, Ingemarsson & Larsson, 1989). Analysis of V_max for net nitrate uptake on intact plant basis in relation to nitrogen demand during stable, nitrogen limited, growth shows an increased overcapacity at lower R_A values in both species, which is largely explained by the increased relative root size at low R_A. A balancing nitrate concentration, defined as the steady state concentration needed to sustain the relative rate of increase in plant nitrogen (R_N), predicted by R_A, was calculated for both species. In the growth limiting range, this value ranges from 3.5 mmol m^?3 (R_A 0.03 d^?1) to 44 mmol m^?3 (R_A 0.21 d^?1) for Pisum and from 0.2 mmol m^?3 (R_A 0.05 d^?1) to 5.4 mmol m^?3 (R_A 0.03 d^?1) for Lemna. It is suggested that this value can be used as a unifying measure of the affinity for nitrate, integrating the performance of the nitrate uptake system with nitrate flux and long term growth and demand for nitrogen.     

Canopy photosynthetic production in a Japanese larch stand. I. Seasonal and vertical changes of leaf characteristics along the light gradient in a canopy

In an 18 year old Japanese larch stand, leaf characteristics such as area, weight, gross photosynthetic rate and respiration rate were studied in order to obtain basic information on estimating canopy photosynthesis and respiration. The leaf growth courses in area and weight from bud opening were approximated by simple logistic curves. The growth coefficient for the area growth curve was 0.155–0.175 day⁻¹, while that for the weight growth was 0.112–0.117 day⁻¹. The larger growth coefficient in area growth caused the seasonal change in specific leaf area (SLA) that increased after bud opening to its peak early in May at almost 300 cm² g⁻¹ and then decreased until it leveled off at about 140 cm²g⁻¹. The change inSLA indicates the possibility that leaf area growth precedes leaf thickness growth. The relationship between the coefficientsa andb of the gross photosynthetic rate (p)-light flux density (1) curve (p=bI/(1+aI)) and the mean relative light flux density (I′/I ₀) at each canopy height were approximated by hyperbolic formulae:a=A/(I′/I ₀)+B andb=C/(I′/I ₀)+D. Leaf respiration rate was also increased with increasingI′/I ₀. Seasonal change of gross photosynthetic rate and leaf respiration rate were related to mean air temperature through linear regression on semilogarithmic co-ordinates.     

Does an antagonistic relationship between ABA and ethylene mediate shoot growth when tomato (Lycopersicon esculentum Mill.) plants encounter compacted soil?

This study tested the hypothesis that antagonistic interactions between abscisic acid (ABA) and ethylene mediate the effects of soil compaction on shoot growth. Isogenic wild‐type (Ailsa Craig), ABA‐deficient (notabilis) and a transgenic (ACO1_AS) tomato genotype with a reduced capacity to synthesize ethylene were examined. Exogenous ABA was also applied. Leaf area was comparable when Ailsa Craig and ACO1_AS were grown in uncompacted (1·1 g cm^?3) or compacted (1·5 g cm^?3) soil, but was lower in notabilis. However, a 1·1/1·5 g cm^?3 split‐pot treatment invoked marked genotypic differences, whereby leaf area was comparable to 1·1 g cm^?3 control plants in ACO1_AS but was intermediate between the 1·1 and 1·5 g cm^?3 treatments in Ailsa Craig and notabilis. ABA may be discounted as the root‐sourced signal responsible for reducing leaf area when the roots encountered compacted soil as Ailsa Craig and ACO1_AS showed differing responses despite similar increases in xylem sap ABA concentration; leaf area was invariably lower in notabilis. These genotypic differences were correlated with ethylene evolution; thus the greater leaf area in ACO1_AS was associated with its reduced ability to synthesize ethylene, whereas the reductions in leaf expansion observed when Ailsa Craig and notabilis encountered compacted soil were accompanied by increased ethylene production. Application of ABA had little effect on ACO1_AS, but promoted a recovery of leaf expansion in notabilis, and more surprisingly in Ailsa Craig. These results suggest that antagonistic interactions between ABA and ethylene may regulate leaf expansion when the root system simultaneously encounters uncompacted and compacted soil.     

AUTOLYSIS KINETICS OF THE MARINE DIATOM DITYLUM BRIGHTWELLII (BACILLARIOPHYCEAE) UNDER NITROGEN AND PHOSPHORUS LIMITATION AND STARVATION1

Autolysis kinetics in axenic cultures of the diatom Ditylum brightwellii (West) Grunow were studied under nutrient limitation in continuous cultures and under nutrient starvation in batch-mode cultures obtained by switching off nutrient supply in the continuous cultures. Under N limitation, the specific algal autolysis rates (δ, day^?1) were found constant at 0.014 ± 0.002 day^?1over a broad range of specific dilution rates (D, day^?1) (0.09–0.56 day^?1), implying an intrinsic death factor independent of the physiologzc state of the algal cells. Under P limitation, 8 was inversely related to D and ranged between 0.067 and 0.005 day^?1 at D = 0.17–0.44 day^?1. Under conditions of nutrient stamation, the degree of algal nutrient deficiency prior to stamation affected autolysis rates (δ_b, day^?1) and subsequently survival of the algal cultures. Nitrogen-starved D. brightwellii showed highest δ_b (maximum, 0.10 day^?1) when precultured at the higher growth rates. Phosphorus stamation led to highest δ_b (maximum, 0.21 day^?1) in the cultures preconditioned at the lower steady state growth rates. The lower death rates for D. brightwellii under limitation and starvation of N compared to P suggest that D. brightwellii was better equipped to handle N than P deficiency. The present results showed that cell lysis induced by nutrient stress was a significant cause of mortality in D. brightwellii and provided more insight into the field distribution of this neritic diatom.     

The use of the chemostat to study the relationship between cell growth rate, viability, and the effect of interferon on L 1210 cells

Mouse leukemia L 1210 cells were cultivated in the chemostat at growth rates ranging from 0.1 day⁻¹ (population doubling time (T_d) 166.3 h) to 2.0 day⁻¹ (T_d 8.3 h). At growth rates of 1.0 day⁻¹ and above, the viability of the steady-state culture was greater than 99%. However, below 1.0 day⁻¹ there was a progressive decrease in the viability of the culture with decreasing growth rate until a minimum growth rate (0.1 day⁻¹) was reached below which steady-state cultures of L 1210 cells could not be established. Interferon treatment had no effect on the viability (>99%) of L 1210 cells cultivated at fast growth rates in the chemostat, whereas at slow growth rates (0.35 day⁻¹) interferon treatment markedly reduced the viability of the culture, even though the percentage increase in the doubling time of interferon-treated cultures was the same for cells cultivated at both fast and slow growth rates. Thus, although interferon is not directly cytotoxic, it can cause cell death by reducing the rate of cell multiplication below the minimum value compatible with viability.     

Organic Carbon Degradation in Anoxic Organic-Rich Shelf Sediments: Biogeochemical Rates and Microbial Abundance

Identifying and explaining bottlenecks in organic carbon mineralization and the persistence of organic matter in marine sediments remain challenging. This study aims to illuminate the process of carbon flow between microorganisms involved in the sedimentary microbial food chain in anoxic, organic-rich sediments of the central Namibian upwelling system, using biogeochemical rate measurements and abundances of Bacteroidetes, Gammaproteobacteria, and sulfate-reducing bacteria at two sampling stations. Sulfate reduction rates decreased by three orders of magnitude in the top 20 cm at one sampling station (280 nmol cm^?3 d^?1 – 0.1 nmol cm^?3 d^?1) and by a factor of 7 at the second station (65 nmol cm^?3 d^?1 – 9.6 nmol cm^?3 d^?1). However, rates of enzymatic hydrolysis decreased by less than a factor of three at both sampling stations for the polysaccharides laminarin (23 nmol cm^?3 d^?1– 8 nmol cm^?3 d^?1 and 22 nmol cm^?3 d^?1– 10 nmol cm^?3 d^?1) and pullulan (11 nmol cm^?3 d^?1– 4 nmol cm^?3 d^?1 and 8 nmol cm^?3 d^?1– 6 nmol cm^?3 d^?1). Increasing imbalance between carbon turnover by hydrolysis and terminal oxidation with depth, the steep decrease in cell specific activity of sulfate reducing bacteria with depth, low concentrations of volatile fatty acids (less than 15 μM), and persistence of dissolved organic carbon, suggest decreasing bioavailability and substrate limitation with depth.     

Internal Leaf Area and Cellular CO2 Resistance: Photosynthetic Implications of Variations with Growth Conditions and Plant Species

The influences of illumination, temperature, and soil water potential during development on leaf thickness, mesophyll cell wall area per unit leaf area (^Ames/A), and the cellular CO₂, resistance expressed on a mesophyll cell wall area basis (r_CO2^cell,) were examined for Plectranthus parviflorus Henckel. Although the ranges of all three growth conditions caused at least 9-fold variations in the leaf biomass produced in 4 weeks, only the illumination had a major effect on internal leaf morphology, e.g. the thickness went from 279 to 831 μm and A^mes/A from 10.5 to 34.8 as the photosynthetically active radiation was raised from 3 to 53 nEinsteins cm^?2 s^?1, while r_CO2^cell remained close to 154 s cm^?1. Variations in the growth temperature, soil water potential, and the nutritional status of the plant, affected photosynthesis mainly by changes in r_CO2^cell. To compare the influence of internal leaf area on photosynthesis for other plants, especially those with low A^mes/A values, the maximum rates of CO₂ uptake at light saturation and photosynthetically optimal temperatures were also determined for a moss, Mnium ciliare (C. Muell.) Schimp., and two ferns, Adiantum decorum Moore and Alsophila australe R. Br. As Ames/A went from 2.00 for the moss to 3.8, 7.5, 11.7, and 20.8 for the fens, the illumination at light saturation and the maximum rate of photosynthesis both progressively increased. The cellular CO₂ resistance, which theoretically might have a lower limit of 20 s cm^?1, ranged from 85 to 190 s cm^?1.     

Interaction of ozone pollution and light effects on photosynthesis in a forest canopy experiment

Ozone pollution may reduce net carbon gain in forests, yet data from mature trees are rare and the effects of irradiance on the response of photosynthesis to ozone remain untested. We used an open-air system to expose 10 branches within the upper canopy of an 18-m-tall stand of sugar maple (Acer saccharum Marsh.) to twice-ambient concentrations of ozone (95nmol mol^?1, 0900 to 1700, 1 h mean) relative to 10 paired, untreated controls (45nmol mol^?1) over 3 months. The branch pairs were selected along a gradient from relatively high irradiance (PPFD 14.5 mol m^?2 d^?1) to deep shade (0.7mol m^?2 d^?1). Ozone reduced light-saturated rates of net photosynthesis (A_sat) and increased dark respiration by as much as 56 and 40%, respectively. Compared to sun leaves, shade leaves exhibited greater proportional reductions in A_sat and had lower chlorophyll concentrations, quantum efficiencies, and leaf absorptances when treated with ozone relative to controls. With increasing ozone dose over time, A_sat became uncoupled from stomatal conductance as ratios of internal to external concentrations of carbon dioxide increased, reducing water-use efficiency. Ozone reduced net photosynthesis and impaired stomatal function, with these effects depending on the irradiance environment of the canopy leaves. Increased ozone sensitivity of shade leaves compared to sun leaves has consequences for net carbon gain in canopies.     

Metabolic patch dynamics in small headwater streams: exploring spatial and temporal variability in benthic processes

1. To gain a better understanding of the heterotrophic nature of small headwater streams in forested landscapes we explored the spatial and temporal variability of in‐stream organic matter processes. Three methods were used to measure the benthic metabolism of different in‐stream habitats in seven streams throughout a calendar year. This allowed us to analyse the contribution of various metabolic habitats (i.e. sediment, leaf litter, cobbles) to in‐stream metabolism during a natural flow regime. Furthermore, it allowed us to define in‐stream patchiness based on functional rather than structural elements. 2. Bacterial growth, measured using a leucine assay, displayed a quadratic relationship over time with a peak in warmer months and consistently higher bacterial growth in fine depositional (3.00–710.64 mg C m^?2 day^?1) than coarse gravel (38.84–582.85 mg C m^?2 day^?1) sediments. 3. Community metabolism, measured using dissolved oxygen chambers, showed distinct diel patterns and consistently greater net daily metabolism in leaf packs (?261.76 to ?24.50 mg C m^?2 day^?1) than fine depositional sediments (?155.00 to ?15.56 mg C m^?2 day^?1). Coarse gravel sediments (?49.55 to ?16.88 mg C m^?2 day^?1) and cobble habitats (?151.98 to 55.38 mg C m^?2 day^?1) exhibited the lowest metabolic rates. Modelled whole‐stream metabolism was highly variable among streams and temporal patterns appeared driven by temperature and the relative contribution of patch configuration as a function of flow. 4. Cellulose decomposition potential showed higher rates of microbial activity in fine depositional compared to coarse gravel sediments (30.5 and 29.1 kg average cotton tensile strength loss respectively), though there were higher rates of thread loss indicative of macroinvertebrate activity in gravel compared to depositional sediment (21% and 13% average thread loss respectively), with a slight quadratic trend. The high variability among habitats, streams and over time in this integrative measure may be explained by variability in local microbial activity as well as the potential for macroinvertebrates to contribute across patches. 5. There were strong relationships among benthic processes and habitat structure, nutrient status, stream temperature and flow. Different habitats had distinct metabolic characteristics and these characteristics appear to influence stream food webs and biogeochemical cycling depending on the relative abundance of habitats. Generally, within habitat variability was less than among habitat variability and among stream variability was less than temporal variability. Hence, in terms of the spatial and temporal heterogeneity of benthic processes, these small headwater streams showed predictable metabolic patterns. However, there were few correlations between differing measures of benthic metabolism at the same patch and this suggests that caution should be taken when attempting to infer the rates of one level of metabolic activity (e.g. whole community metabolism) based on another (e.g. bacterial productivity).     

Size dependence of composition, photosynthesis and growth in the colony-forming freshwater ciliate, Ophrydium versatile

1. Ophrydium versatile is a symbiotic ciliate which forms gelatinous colonies up to several centimetres in diameter in transparent temperate lakes. The ciliates are evenly spaced at the colony surface and constitute a small proportion of the surface area (7%) and volume (3.1%) of the colony, but a large proportion of organic carbon (74%) and nitrogen content (82%) (exemplified for 1 cm³ colonies). The majority of the colony volume is formed by the jelly. The biomass proportion of ciliates scales inversely with colony size, following the decline of surface area to colony volume. The largest colonies found in Danish lakes in early summer contain almost 1 million ciliates, and assuming they derive from a single ciliate undergoing exponential division, they need twenty generations and, presumably, almost a year to reach maximum size. 2. The ciliates contain numerous symbiotic zoochlorellae that constitute about 10% of ciliate volume and more than half of the carbon content. Zoochlorellae dominate oxygen metabolism of the assemblage, resulting in low light compensation points, a large diel photosynthetic surplus, and a marked dependence on light for sustained growth and ciliate metabolism. Estimated gross photosynthesis (7ng C ciliate^?1 day^?1) of Ophnrydium from shallow, clear waters in June greatly exceeded the estimated carbon contained in filtered bacteria and small algae (1.9ng C cilicate^?1 day^?1). Nitrogen and phosphorus content of the prey, however, may provide the main nutrient source consistent with the correspondence between mass-specific rates of nutrient uptake and measured relative growth rates (average 0.067 day^?1, generation time 10 days). 3. The large Ophrydium colonies require increased allocation of photosynthetic carbohydrates with increasing colony size to maintain the jelly. The large colonies tend to become gas-filled, floating, mechanically destroyed and their ciliate inhabitants abandon them as swarmers. Colony formation, however, should offer protection against predators which may be more important for the natural abundance than the costs of growing in a colony.     

A passive apparatus for controlled-flux delivery of biocides: hydrogen peroxide as an example

A new test method has been developed to estimate the required release rate of hydrogen peroxide (H₂O₂) to prevent marine biofouling. The technique exploits a well-defined concentration gradient of biocide across a cellulose acetate membrane. A controlled flux of H₂O₂, an environmentally friendly biocide, was obtained. Larvae of the barnacle, Balanus improvisus, were subjected to known release rates of H₂O₂ from a surface, under laboratory conditions. It was found that the distribution of settled larvae was not significantly different from the controls when H₂O₂ fluxes of 5–8 μg cm^?2 day^?1 were applied. However, release rates of 40 μg cm^?2 day^?1 significantly displaced the distribution of settled larvae towards the area of the chamber farthest away from the membrane. Membrane tests in seawater (Jyllinge Harbour, Denmark) for over 16 weeks showed that release rates of H₂O₂ of approximately 2800 μg cm^?2 day^?1 deterred biofouling efficiently. A H₂O₂ release rate of about 224 μg cm^?2 day^?1 resulted in some slime formation, but it was less than that on the H₂O₂-free control. It appears that to obtain efficient resistance to biofouling in natural seawater requires much higher membrane release rates of H₂O₂ (factor of between 5 and 50) than laboratory membrane exposure assays using barnacle larvae.     

Canopy transpiration in a chronosequence of Central Siberian pine forests

Tree transpiration was measured in 28, 67, 204 and 383‐y‐old uniform stands and in a multicohort stand (140–430 y) of Pinus sylvestris ssp. sibirica Lebed. in Central Siberia during August 1995. In addition transpiration of three codominant trees was monitored for two years in a 130‐y‐old stand. All stands established after fire. Leaf area index (LAI) ranged between 0.6 (28‐y‐old stand) and 1.6 for stands older than 67‐y. Stand xylem area at 1.3 m height increased from 4 cm² m^?2 (28‐y) to 11.5 cm² m^?2 (67‐y) and decreased again to 7 cm² m^?2 in old stands. Above‐ground living biomass increased from 1.5 kg dry weight m^?2 (28‐y) to 14 kg dry weight m^?2 (383‐y). Day‐to‐day variation of tree transpiration in summer was dependent on net radiation, vapour pressure deficit, and soil water stress. Tree‐to‐tree variation of xylem flux was small and increased with heterogeneity in canopy structure. Maximum rates of xylem flux density followed the course of net radiation from mid April when a constant level of maximum rates was reached until mid September when low temperatures and light strongly reduced flux density. Maximum sap flux density (60 g m^?2 s^?1) and canopy transpiration (1.5 mm d^?1) were reached in the 67‐y stand. Average canopy transpiration of all age classes was 0.72 ± 0.3 mm d^?1. Canopy transpiration (E) was not correlated with LAI but related to stand sapwood area SA (E = ? 0.02 + 1.15SA R²) which was determined by stand density and tree sapwood area.     

Leaf traits variation during leaf expansion in <Emphasis Type="Italic">Quercus ilex</Emphasis> L.

The morphological, anatomical and physiological variations of leaf traits were analysed during Quercus ilex L. leaf expansion. The leaf water content (LWC), leaf area relative growth rate (RGR_l) and leaf dry mass relative growth rate (RGR_m) were the highest (76±2 %, 0.413 cm² cm⁻² d⁻¹, 0.709 mg mg⁻¹ d⁻¹, respectively) at the beginning of the leaf expansion process (7 days after bud break). Leaf expansion lasted 84±2 days when air temperature ranged from 13.3±0.8 to 27.6±0.9 °C. The net photosynthetic rate (P _N), stomatal conductance (g _s), and chlorophyll content per fresh mass (Chl) increased during leaf expansion, having the highest values [12.62±1.64 μmol (CO₂) m⁻² s⁻¹, 0.090 mol (H₂O) m⁻² s⁻¹, and 1.03±0.08 mg g⁻¹, respectively] 56 days after bud break. Chl was directly correlated with leaf dry mass (DM) and P _N. The thickness of palisade parenchyma contributed to the total leaf thickness (263.1±1.5 μm) by 47 %, spongy layer thickness 38 %, adaxial epidermis and cuticle thickness 9 %, and abaxial epidermis and cuticle thickness 6 %. Variation in leaf size during leaf expansion might be attributed to a combination of cells density and length, and it is confirmed by the significant (p<0.001) correlations among these traits. Q. ilex leaves reached 90 % of their definitive structure before the most severe drought period (beginning of June — end of August). The high leaf mass area (LMA, 15.1±0.6 mg cm⁻²) at full leaf expansion was indicative of compact leaves (2028±100 cells mm⁻²). Air temperature increasing might shorten the favourable period for leaf expansion, thus changing the final amount of biomass per unit leaf area of Q. ilex.     

Woody plant invasion at a semi‐arid/arid transition zone: importance of ecosystem type to colonization and patch expansion

Question: How do patterns in colonization and patch expansion of an invasive woody plant (Larrea tridentata, Zygo‐phyllaceae) differ between two grassland ecosystems at a biome transition zone? Location: Semi‐arid/arid transition zone in central New Mexico. Methods: Frequency of occurrence, height, and surface area of saplings (n= 134) and patches of adult plants (n= 247) of the invasive shrub, L. tridentata, were measured within a mosaic of ecosystems dominated either by the Chihuahuan Desert species, Bouteloua eriopoda (Poaceae), or the shortgrass steppe species, B. gracilis, located within 1 km of the L. tridentata‐dominated ecosystem. Distances between L. tridentata patches and patch area were used to estimate connectivity as a measure of propagule pressure. Sapling age (estimated from height using previously established relationships) and distance to the L. tridentata‐dominated ecosystem was used to evaluate patterns in dispersal. Cover by species or functional group inside each L. tridentata patch was compared with surrounding vegetation to estimate changes in species composition with patch expansion. Results: L. tridentata saplings (< 1%) and adult patches (15%) occurred less frequently in B. gracilis‐dominated ecosystems than expected based on areal extent of this ecosystem type. Propagule pressure did not differ with distance from the core ecosystem dominated by L. tridentata. Evidence for both local and long‐distance dispersal events was found. Similar relationships between number of plants and patch area in both grassland types indicate similar patterns in patch expansion. Cover of perennial forbs was higher and cover of dominant grasses was lower in L. tridentata patches compared with the surrounding vegetation for both ecosystem types. Conclusions Spatial variation in L. tridentata saplings and patches at this biome transition zone is related to the different susceptibilities to invasion by two grassland ecosystems. The persistence of grasslands at this site despite region‐wide expansion by L. tridentata may be related to the spatial distribution of B. gracilis‐dominated ecosystems that resist or deter invasion by this woody plant.     

AN ALTERNATE GROWTH PATTERN FOR LAMINARIA LONGICRURIS1,2

A population of Laminaria longicruris de la Pylaie was followed for a year at Bic Island, Quebec, Canada where nutrient levels in the seawater were elevated throughout the year. Tagged kelp were measured each month for growth and analyzed for alginic acid, laminaran, mannitol, carbon, nitrogen, and nitrate. Maximum growth (3.5 cm · d^?1) was observed in June, and minimal growth (0.18 cm · d^?1) from December to February, when ice cover limited light levels. No reserves of carbon or nitrate were formed. Laminaran levels remained below 2.7% dry weight while tissue nitrate did not exceed 0.75 μmol · g^?1 dry weight. Total carbon produced per plant was 40 g C · yr^?1. Nutrient availability enables the kelp to take advantage of summer light and temperature conditions to grow rapidly.     

Cocoa agroforestry is less resilient to sub‐optimal and extreme climate than cocoa in full sun

Cocoa agroforestry is perceived as potential adaptation strategy to sub‐optimal or adverse environmental conditions such as drought. We tested this strategy over wet, dry and extremely dry periods comparing cocoa in full sun with agroforestry systems: shaded by (i) a leguminous tree species, Albizia ferruginea and (ii) Antiaris toxicaria, the most common shade tree species in the region. We monitored micro‐climate, sap flux density, throughfall, and soil water content from November 2014 to March 2016 at the forest‐savannah transition zone of Ghana with climate and drought events during the study period serving as proxy for projected future climatic conditions in marginal cocoa cultivation areas of West Africa. Combined transpiration of cocoa and shade trees was significantly higher than cocoa in full sun during wet and dry periods. During wet period, transpiration rate of cocoa plants shaded by A. ferruginea was significantly lower than cocoa under A. toxicaria and full sun. During the extreme drought of 2015/16, all cocoa plants under A. ferruginea died. Cocoa plants under A. toxicaria suffered 77% mortality and massive stress with significantly reduced sap flux density of 115 g cm^?2 day^?1, whereas cocoa in full sun maintained higher sap flux density of 170 g cm^?2 day^?1. Moreover, cocoa sap flux recovery after the extreme drought was significantly higher in full sun (163 g cm^?2 day^?1) than under A. toxicaria (37 g cm^?2 day^?1). Soil water content in full sun was higher than in shaded systems suggesting that cocoa mortality in the shaded systems was linked to strong competition for soil water. The present results have major implications for cocoa cultivation under climate change. Promoting shade cocoa agroforestry as drought resilient system especially under climate change needs to be carefully reconsidered as shade tree species such as the recommended leguminous A. ferruginea constitute major risk to cocoa functioning under extended severe drought.     

Complex nitrogen cycling in the sponge Geodia barretti

Marine sponges constitute major parts of coral reefs and deep‐water communities. They often harbour high amounts of phylogenetically and physiologically diverse microbes, which are so far poorly characterized. Many of these sponges regulate their internal oxygen concentration by modulating their ventilation behaviour providing a suitable habitat for both aerobic and anaerobic microbes. In the present study, both aerobic (nitrification) and anaerobic (denitrification, anammox) microbial processes of the nitrogen cycle were quantified in the sponge Geodia barretti and possible involved microbes were identified by molecular techniques. Nitrification rates of 566 nmol N cm^?3 sponge day^?1 were obtained when monitoring the production of nitrite and nitrate. In support of this finding, ammonia‐oxidizing Archaea (crenarchaeotes) were found by amplification of the amoA gene, and nitrite‐oxidizing bacteria of the genus Nitrospira were detected based on rRNA gene analyses. Incubation experiments with stable isotopes (¹⁵NO₃^‐ and ¹⁵NH₄⁺) revealed denitrification and anaerobic ammonium oxidation (anammox) rates of 92 nmol N cm^?3 sponge day^?1 and 3 nmol N cm^?3 sponge day^?1 respectively. Accordingly, sequences closely related to ‘Candidatus Scalindua sorokinii’ and ‘Candidatus Scalindua brodae’ were detected in 16S rRNA gene libraries. The amplification of the nirS gene revealed the presence of denitrifiers, likely belonging to the Betaproteobacteria. This is the first proof of anammox and denitrification in the same animal host, and the first proof of anammox and denitrification in sponges. The close and complex interactions of aerobic, anaerobic, autotrophic and heterotrophic microbial processes are fuelled by metabolic waste products of the sponge host, and enable efficient utilization and recirculation of nutrients within the sponge–microbe system. Since denitrification and anammox remove inorganic nitrogen from the environment, sponges may function as so far unrecognized nitrogen sinks in the ocean. In certain marine environments with high sponge cover, sponge‐mediated nitrogen mineralization processes might even be more important than sediment processes.     

Interactions between gnathiid isopods,cleaner fish and other fishes on Lizard Island,Great Barrier Reef

The rate of emergence of micropredatory gnathiid isopods from the benthos, the proportion of emerging gnathiids potentially eaten by Labroides dimidiatus, and the volume of blood that gnathiids potentially remove from fishes (using gnathiid gut volume) were determined. The abundance (mean ±s.e .) of emerging gnathiids was 41·7 ± 6·9 m^?2 day^?1 and 4552 ± 2632 reef^?1 day^?1 (reefs 91–125 m²). The abundance of emerging gnathiids per fish on the reef was 4·9 ± 0·8 day^?1; but excluding the rarely infested pomacentrid fishes, it was 20·9 ± 3·8 day^?1. The abundance of emerging gnathiids per patch reef was 66 ± 17% of the number of gnathiids that all adult L. dimidiatus per reef eat daily while engaged in cleaning behaviour. If all infesting gnathiids subsequently fed on fish blood, their total gut volume per reef area would be 17·4 ± 5·6 mm³ m^?2 day^?1; and per fish on the reefs, it would be 2·3 ± 0·5 mm^?3 fish^?1 day^?1 and 10·3 ± 3·1 mm³ fish^?1 day^?1 (excluding pomacentrids). The total gut volume of gnathiids infesting caged (137 mm standard length, L_S) and removed from wild (100–150 mm L_S) Hemigymnus melapterus by L. dimidiatus was 26·4 ± 24·6 mm³ day^?1 and 53·0 ± 9·6 mm³ day^?1, respectively. Using H. melapterus (137 mm L_S, 83 g) as a model, gnathiids had the potential to remove, 0·07, 0·32, 0·82 and 1·63% of the total blood volume per day of each fish, excluding pomacentrids, caged H. melapterus and wild H. melapterus, respectively. In contrast, emerging gnathiids had the potential of removing 155% of the total blood volume of Acanthochromis polyacanthus (10·7 mm L_S, 0·038 g) juveniles. That L. dimidiatus eat more gnathiids per reef daily than were sampled with emergence traps suggests that cleaner fishes are an important source of mortality for gnathiids. Although the proportion of the total blood volume of fishes potentially removed by blood‐feeding gnathiids on a daily basis appeared to be low for fishes weighing 83 g, the cumulative effects of repeated infections on the health of such fish remains unknown; attacks on small juvenile fishes, may result in possibly lethal levels of blood loss.     

Uptake kinetics and storage capacity of dissolved inorganic phosphorus and corresponding N:P dynamics in Ulva lactuca (Chlorophyta)

Dissolved inorganic phosphorus (DIP ) is an essential macronutrient for maintaining metabolism and growth in autotrophs. Little is known about DIP uptake kinetics and internal P‐storage capacity in seaweeds, such as Ulva lactuca (Chlorophyta). Ulva lactuca is a promising candidate for biofiltration purposes and mass commercial cultivation. We exposed U. lactuca to a wide range of DIP concentrations (1–50 μmol · L^?1) and a nonlimiting concentration of dissolved inorganic nitrogen (DIN ; 5,000 μmol · L^?1) under fully controlled laboratory conditions in a “pulse‐and‐chase” assay over 10 d. Uptake kinetics were standardized per surface area of U. lactuca fronds. Two phases of responses to DIP ‐pulses were measured: (i) a surge uptake (V_S ) of 0.67 ± 0.10 μmol · cm^?2 · d^?1 and (ii) a steady state uptake (V_M ) of 0.07 ± 0.03 μmol · cm^?2 · d^?1. Mean internal storage capacity (ISC_P ) of 0.73 ± 0.13 μmol · cm^?2 was calculated for DIP . DIP uptake did not affect DIN uptake. Parameters of DIN uptake were also calculated: V_S  = 12.54 ± 1.90 μmol · cm^?2 · d^?1, V_M  = 2.26 ± 0.86 μmol · cm^?2 · d^?1, and ISC_N  = 22.90 ± 6.99 μmol · cm^?2. Combining ISC and V_M values of P and N, nutrient storage capacity of U. lactuca was estimated to be sufficient for ~10 d. Both P and N storage capacities were filled within 2 d when exposed to saturating nutrient concentrations, and uptake rates declined thereafter at 90% for DIP and at 80% for DIN . Our results contribute to understanding the ecological aspects of nutrient uptake kinetics in U. lactuca and quantitatively evaluating its potential for bioremediation and/or biomass production for food, feed, and energy.