Restructuring plant types for developing tailor-made crops

Plants have adapted to different environmental niches by fine-tuning the developmental factors working together to regulate traits. Variations in the developmental factors result in a wide range of quantitative variations in these traits that helped plants survive better. The major developmental pathways affecting plant architecture are also under the control of such pathways. Most notable are the CLAVATA-WUSCHEL pathway regulating shoot apical meristem fate, GID1-DELLA module influencing plant height and tillering, LAZY1-TAC1 module controlling branch/tiller angle and the TFL1-FT determining the floral fate in plants. Allelic variants of these key regulators selected during domestication shaped the crops the way we know them today. There is immense yield potential in the ‘ideal plant architecture’ of a crop. With the available genome-editing techniques, possibilities are not restricted to naturally occurring variations. Using a transient reprogramming system, one can screen the effect of several developmental gene expressions in novel ecosystems to identify the best targets. We can use the plant's fine-tuning mechanism for customizing crops to specific environments. The process of crop domestication can be accelerated with a proper understanding of these developmental pathways. It is time to step forward towards the next-generation molecular breeding for restructuring plant types in crops ensuring yield stability.     

Computational models of plant development and form

The use of computational techniques increasingly permeates developmental biology, from the acquisition, processing and analysis of experimental data to the construction of models of organisms. Specifically, models help to untangle the non-intuitive relations between local morphogenetic processes and global patterns and forms. We survey the modeling techniques and selected models that are designed to elucidate plant development in mechanistic terms, with an emphasis on: the history of mathematical and computational approaches to developmental plant biology; the key objectives and methodological aspects of model construction; the diverse mathematical and computational methods related to plant modeling; and the essence of two classes of models, which approach plant morphogenesis from the geometric and molecular perspectives. In the geometric domain, we review models of cell division patterns, phyllotaxis, the form and vascular patterns of leaves, and branching patterns. In the molecular-level domain, we focus on the currently most extensively developed theme: the role of auxin in plant morphogenesis. The review is addressed to both biologists and computational modelers.     

植物开花的组蛋白甲基化调控分子机理

开花是指植物从营养生长转变到生殖生长的生理过程, 是植物个体发育和后代繁衍的中心环节, 既受遗传基础决定,同时又受到温度和光周期等多种环境因素的调控。在拟南芥中, 已经分离了大量的与开花相关的基因, 从遗传学上已初步形成了一个开花调控的网络。组蛋白甲基化是植物发育过程的重要调节方式, 近年来关于其参与开花调控的研究有了重要进展。本文综述了具有代表性的组蛋白H3赖氨酸甲基化修饰参与调控植物开花发育的机制, 提出该研究领域的发展方向和前景。     

植物开花的组蛋白甲基化调控分子机理

开花是指植物从营养生长转变到生殖生长的生理过程,是植物个体发育和后代繁衍的中心环节,既受遗传基础决定,同时又受到温度和光周期等多种环境因素的调控。在拟南芥中,已经分离了大量的与开花相关的基因,从遗传学上已初步形成了一个开花调控的网络。组蛋白甲基化是植物发育过程的重要调节方式,近年来关于其参与开花调控的研究有了重要进展。本文综述了具有代表性的组蛋白H3赖氨酸甲基化修饰参与调控植物开花发育的机制,提出该研究领域的发展方向和前景。     

Role of phosphatidic acid in plant galactolipid synthesis

Phosphatidic acid (PA) is a precursor metabolite for phosphoglycerolipids and also for galactoglycerolipids, which are essential lipids for formation of plant membranes. PA has in addition a main regulatory role in a number of developmental processes notably in the response of the plant to environmental stresses. We review here the different pools of PA dispatched at different locations in the plant cell and how these pools are modified in different growth conditions, particularly during plastid membrane biogenesis and when the plant is exposed to phosphate deprivation. We analyze how these modifications can affect galactolipid synthesis by tuning the activity of MGD1 enzyme allowing a coupling of phospho- and galactolipid metabolisms. Some mechanisms are considered to explain how physicochemical properties of PA allow this lipid to act as a central internal sensor in plant physiology.     

植物激素乙烯作用机制的最新进展

气体植物激素乙烯在植物生长发育及应对胁迫的防御反应中起重要调控作用．通过20多年的研究,利用模式植物拟南芥,勾画出一条自内质网膜受体至细胞核内转录因子的线性乙烯信号转导通路．本文概述了研究乙烯信号转导的方法及乙烯信号转导的基本过程;阐述了最新发现的乙烯信号从内质网膜传递到细胞核的分子机制,即原本定位于内质网膜上的EIN2蛋白其C端被剪切之后进入细胞核,然后通过抑制EBF1／2而稳定转录因子EIN3／EIL1;根据最近多个小组报道EIN3／EIL1直接调控除乙烯响应基因之外的其他生物学过程相关基因,提出了EIN3／EIL1可以作为网络节点整合多条信号通路的新观点;通过分析不同信号通路调控EIN3／EIL1的方式,发现不仅EIN3／EIL1的蛋白稳定性受到调控,而且其转录活性还受到诸如JAZ,DELLA等转录调节因子的调控．本文展望了未来乙烯信号转导通路的研究方向与研究热点．     

Joint evolution of interspecific mutualism and regulation of variation of interaction under directional selection in trait space

The present study theoretically examines the process by which interspecific mutualism is established with trait matching. The mathematical model includes joint evolution of the mutualistic relationship between two species and regulation of variation of interaction in one-dimensional trait space, assuming abiotic directional selection. The model considers three types of regulation: homeostasis against environmental variation, developmental stability, and acceptability of dissimilar mutualism partners (mutualism kernel). Mainly focusing on the developmental stability, the analysis indicates that the mutualism can evolve when (1) higher levels of developmental stability are more intensively degenerated by deleterious mutations, (2) the basal rate of deleterious mutation is low, (3) trait expression is less influenced by environmental factors, and (4) the specificity of mutualism is high. It also shows that the evolution of developmental stability can promote the evolution of mutualism with trait matching when the deleterious mutation bias disappears at a certain level of developmental instability. Evolution of homeostasis and mutualism kernel can be discussed in the similar way because of formal similarities in the model. In plant–pollinator interactions, it has recently been proposed that evolutionary increments of developmental stability in mutualistic traits might promote plant diversification. The present results partly support this hypothesis with respect to the evolutionary relationship between mutualism and developmental stability.     

小分子RNA在植物激素信号通路中的调控功能

植物激素是调控植物生长发育的信号分子。近年来的研究发现,小分子RNA作为基因表达调控网络的组分,参与植物激素信号途径,在植物生长发育和胁迫反应方面发挥重要作用。本文综述了miRNA和次级siRNA(Short interfering RNAs)介导的基因调控与植物激素信号通路相互作用的研究进展,主要包括生长素、赤霉素、油菜素内酯和脱落酸途径涉及的miRNA及其功能,并对不同发育过程中miRNA参与的不同激素信号通路的交叉和互作进行了讨论。     

Molecular evolution of the chalcone synthase multigene family in the morning glory genome

Plant genomes appear to exploit the process of gene duplication as a primary means of acquiring biochemical and developmental flexibility. Thus, for example, most of the enzymatic components of plant secondary metabolism are encoded by small families of genes that originated through duplication over evolutionary time. The dynamics of gene family evolution are well illustrated by the genes that encode chalcone synthase (CHS), the first committed step in flavonoid biosynthesis. We review pertinent facts about CHS evolution in flowering plants with special reference to the morning glory genus, Ipomoea. Our review shows that new CHS genes are recruited recurrently in flowering plant evolution. Rates of nucleotide substitution are frequently accelerated in new duplicate genes, and there is clear evidence for repeated shifts in enzymatic function among duplicate copies of CHS genes. In addition, we present new data on expression patterns of CHS genes as a function of tissue and developmental stage in the common morning glory (I. purpurea). These data show extensive differentiation in gene expression among duplicate copies of CHS genes. We also show that a single mutation which blocks anthocyanin biosynthesis in the floral limb is correlated with a loss of expression of one of the six duplicate CHS genes present in the morning glory genome. This suggests that different duplicate copies of CHS have acquired specialized functional roles over the course of evolution. We conclude that recurrent gene duplication and subsequent differentiation is a major adaptive strategy in plant genome evolution.     

植物DNA甲基化作用机制的研究进展

DNA甲基化是表观遗传学的一种重要修饰形式,也是一种重要的基因表达调控机制。DNA甲基化的异常模式可导致植物生长发育异常。文中从植物DNA甲基化模式入手,对DNA甲基化在调控基因表达和维持基因组稳定性的分子功能、DNA甲基化在植物发育、参与植物对生物和非生物胁迫的反应等方面的相关研究进行回顾和总结,为深入了解DNA甲基化的作用机制并将DNA甲基化应用于植物新品种的培育和遗传改良研究提供一定的参考。     

Environmental,developmental, and genetic factors controlling root system architecture

A better understanding of the development and architecture of roots is essential to develop strategies to increase crop yield and optimize agricultural land use. Roots control nutrient and water uptake, provide anchoring and mechanical support and can serve as important storage organs. Root growth and development is under tight genetic control and modulated by developmental cues including plant hormones and the environment. This review focuses on root architecture and its diversity and the role of environment, nutrient, and water as well as plant hormones and their interactions in shaping root architecture.     

结构植物学在中国的五十年发展

结构植物学由植物解剖学发展而来,是植物学的一个重要分支学科.本文根据其近代的发展,分别就植物发育解剖学向植物发育生物学的发展、植物比较解剖学向植物系统发育生物学的发展,以及环境生态结构植物学三个主要部分简要介绍了50年来在我国的发展,并对它们的发展趋势进行了预测.     

结构植物学在中国的五十年发展

结构植物学由植物解剖学发展而来 ,是植物学的一个重要分支学科。本文根据其近代的发展 ,分别就植物发育解剖学向植物发育生物学的发展、植物比较解剖学向植物系统发育生物学的发展 ,以及环境生态结构植物学三个主要部分简要介绍了 5 0年来在我国的发展 ,并对它们的发展趋势进行了预测     

Shrubs, granivores and annual plant community stability in an arid ecosystem

Compensatory population dynamics among species stabilise aggregate community variables. Inter-specific competition is thought to be stabilising as it promotes asynchrony among populations. However, we know little about other inter-specific interactions, such as facilitation and granivory. Such interactions are also likely to influence population synchrony and community stability, especially in harsh environments where they are thought to have relatively strong effects in plant communities. We use a manipulative experiment to test the effects of granivores (harvester ants) and nurse plants (dwarf shrubs) on annual plant community dynamics in the Negev desert, Israel. We present evidence for weak and inconsistent effects of harvester ants on plant abundance and on population and community stability. By contrast, we show that annual communities under shrubs were more species rich, had higher plant density and were temporally less variable than communities in the inter-shrub matrix. Species richness and plant abundance were also more resistant to drought in the shrub under-storey compared with the inter-shrub matrix, although population dynamics in both patch types were synchronised. Hence, we show that inter-specific interactions other than competition affect community stability, and that hypothesised mechanisms linking compensatory dynamics and community stability may not operate to the same extent in arid plant communities.     

Epigenetic regulation of adaptive responses of forest tree species to the environment

Epigenetic variation is likely to contribute to the phenotypic plasticity and adaptative capacity of plant species, and may be especially important for long‐lived organisms with complex life cycles, including forest trees. Diverse environmental stresses and hybridization/polyploidization events can create reversible heritable epigenetic marks that can be transmitted to subsequent generations as a form of molecular “memory”. Epigenetic changes might also contribute to the ability of plants to colonize or persist in variable environments. In this review, we provide an overview of recent data on epigenetic mechanisms involved in developmental processes and responses to environmental cues in plant, with a focus on forest tree species. We consider the possible role of forest tree epigenetics as a new source of adaptive traits in plant breeding, biotechnology, and ecosystem conservation under rapid climate change.