An insertional translocation in neurospora that generates duplications heterozygous for mating type

In strain T(I-->II)39311 a long interstitial segment is transposed from IL to IIR, where it is inserted in reversed order with respect to the centromere. In crosses of T x T essentially all asci have eight viable, black spores, and all progeny are phenotypically normal. When T(I-->II)39311 is crossed by Normal sequence (N), the expected duplication class is viable while the corresponding deficiency is lethal; 44% of the asci have 8 Black (viable) spores and 0 White (inviable) spores, 41% have 4 Black: 4 White, and 10% have 6 Black: 2 White. These are the ascus types expected from normal centromere disjunction without crossing over (8B:0W and 4B:4W equally probable), and with crossing over between centromere and break point (6B:2W). On germination, 8B:0W asci give rise to only parental types-4 T and 4 N; 4B:4W asci usually give four duplication (Dup) progeny; and 6B:2W asci usually give 2 T, 2 N, 2 Dup. Thus one third of all viable, black ascospores contain duplications.-Recessive markers in the donor chromosome which contributes the translocated segment can be mapped by duplication coverage. Ratios of 2 Dominant: 1 Recessive vs. 1 Dominant: 2 Recessive distinguish location in or outside the transposed segment. Eleven loci including mating type have been shown to lie within the segment, and markers at four loci have been transferred into the segment by meiotic recombination. The frequency of marker transfer indicates that the inserted segment usually pairs with its homologue. Ascus types that would result from single exchanges within the insertion are infrequent, as expected if asci containing dicentric bridges usually do not survive.-Duplication ascospores germinate to produce distinctive inhibited colonies. Later these "escape" to grow like wild type, and genes that were initially heterozygous in the duplication segregate when escape occurs. As with duplications from pericentric inversion In(IL-->IR)H4250 (Newmeyer and Taylor 1967), the initial inhibition is attributed to mating-type heterozygosity, and escape to a somatic event that makes mating type homoor hemizygous.-Twenty additional duplication-generating Neurospora rearrangements are listed and described briefly in an Appendix.     

Transposition of the maize autonomous element Activator in transgenic Nicotiana plumbaginifolia plants

The maize autonomous transposable element Ac was introduced into haploid Nicotiana plumbaginifolia via Agrobacterium tumefaciens transformation of leaf disks. All the regenerated transformants (R0) were diploid and either homozygous or heterozygous for the hygromycin resistance gene used to select primary transformants. The Ac excision frequency was determined using the phenotypic assay of restoration of neomycin phosphotransferase activity and expression of kanamycin resistance among progeny seedlings. Some of the R0 plants segregated kanamycin-resistant seedlings in selfed progeny at a high frequency (34 to 100%) and contained one or more transposed Ac elements. In the primary transformants Ac transposition probably occurred during plant regeneration or early development. Other R0 transformants segregated kanamycin-resistant plants at a low frequency ( 4%). Two transformants of this latter class, containing a unique unexcised Ac element, were chosen for further study in the expectation that their kanamycin resistant progeny would result from independent germinal transposition events. Southern blot analysis of 32 kanamycin-resistant plants (R1 or R2), selected after respectively one or two selfings of these primary transformants, showed that 27 had a transposed Ac at a new location and 5 did not have any Ac element. Transposed Ac copy number varied from one to six and almost all transposition events were independent. Southern analysis of the R2 and R3 progeny of these kanamycin-resistant plants showed that Ac continued to transpose during four generations, and its activity increased with its copy number. The frequency of Ac transposition, from different loci, remained low ( 7%) from R0 to R3 generations when only one Ac copy was present. The strategy of choosing R0 plants that undergo a low frequency of germinal excision will provide a means to avoid screening non-independent transpositions and increase the efficiency of transposon tagging.     

Effects of gene dosage and sequence modification on the frequency and timing of transposition of the maize element Activator (Ac) in tobacco

The effect of Ac copy number on the frequency and timing of germinal transposition in tobacco was investigated using the streptomycin phosphotransferase gene (SPT) as an excision marker. The activity of one and two copies of the element was compared by selecting heterozygous and homozygous progeny of transformants carrying single SPT::Ac inserts. It was observed that increasing gene copy not only increases the transposition frequency, but also occasionally alters the timing of transposition such that earlier events are obtained. The result is that some homozygous plants generate multiple streptomycin resistant progeny carrying the same transposed Ac (trAc) element. We have also investigated the effect of modification of the sequence in the region around 82 bp downstream of the polyadenylation site and 177 bp from the 3 end of the element on germinal excision frequencies. Alteration of three bases to create a BglII site at this location caused a minor decrease in germinal excision events, but insertion of four bases to create a Cla I site caused a 10-fold decrease in the transposition activity of the Ac element.     

A cloned I-factor is fully functional in Drosophila melanogaster

Summary I-R hybrid dysgenesis in Drosophila melanogaster occurs in female progeny of crosses between reactive strain females and inducer strain males, and is controlled by transposable elements called I-factors. These are 5.3 kb elements that are structurally similar to mammalian LINE elements and other retroposons. We have tested the activity of an I-factor directly, by introducing it into the genome of a reactive strain, using P-element mediated transformation. It confers the complete inducer phenotype on the reactive strain, and can stimulate dysgenesis when transformed males are mated with reactive females. It has transposed in the transformed lines, and we have cloned one of the transposed copies. This is the first time that it has been possible to demonstrate that a particular retroposon is transposition proficient, and to compare donor and transposed elements. We propose a mechanism for I-factor transposition based on these results, and the coding capacity of these elements. We have been unable to detect either autonomous transposition of a complete I-factor from a plasmid injected into reactive strain embryos, or transposition of a marked I-factor when co-injected with a complete element.     

A chromosome rearrangement in Neuvospora that produces viable progeny containing two nucleolus organizers

In rearrangement T(VLIVL)AR33 the segment of chromosome 2 bearing the nucleolus organizer is translocated to the end of chromosome 4. When AR33 is crossed by Normal sequence (N), one third of the viable progeny contain a stable nontandem duplication with two organizers per nucleus. The organizer-deficient complementary products are inviable. Chromosomes and nucleoli have been examined during meiosis and postmeiotic nuclear divisions in the ascus, comparing heterozygous AR33 × N crosses with N × N and with crosses heterozygous for other interchanges. When AR33 is heterozygous, asci are of three types having the nucleolus organizer duplicated in 0, 1 or 2 of the meiotic products. Frequencies of the ascus types are as expected from the known positions of rearrangement break points. Nucleoli formed by two organizers frequently fuse. Deficiency nuclei that contain no nucleolus organizer may form one or more small nucleolus-like bodies.     

Association of four isozyme loci with a reciprocal translocation between 1R/4R chromosomes in cultivated rye (Secale cereale L.)

Summary The progeny of four crosses between a structural heterozygote for a reciprocal translocation and a homozygote for the standard chromosome arrangement were analyzed in rye (Secale cereale L. cv Ailés) for the electrophoretic patterns of eight different leaf and endosperm isozymes and also for the meiotic configuration at metaphase I. The Pgi-1, 6-Pgd-2 and Mdh-1 loci are linked to each other and also to the reciprocal translocation. These loci have been located on chromosome 1R. The Mdh-1 locus is located in the interstitial segment of chromosome 1R, between the centromere and the breakpoint. The Pgm-1 locus has been located on chromosome arm 4RS and is linked to Pgi-1, 6-Pgd-2, Mdh-1 and the reciprocal translocation. The estimated distance between the Pgm-1 locus and the centromere is 14.98 ± 2.27 cM. Therefore, the reciprocal translocation involves the 1R and 4R chromosomes. Other linked loci detected have been Mdh-2b and Est-2 (7.40 ± 2.90 cM) and Got-3 and Est-2 (5.62 ± 3.07 cM). These three last loci are located on chromosome 3R and their order most probably is Mdh-2b — Est-2 — Got-3.     

Inheritance of mitochondrial DNA in lentil (Lens culinaris Medik.)

Restriction fragment analysis was used to examine the inheritance of lentil mitochondrial DNA (mtDNA) in F₁ and F₅ progeny from intrasubspecific (Lens culinaris ssp. culinaris) crosses and in F₁ progeny from intersubspecific (Lens culinaris ssp. orientalis x L. culinaris ssp. culinaris) crosses. Southern blots of digested parental and progeny DNA were hybridized to heterologous maize mtDNA probes specific to coxI and atp6 genes. Two restriction fragment polymorphisms separated L.c. ssp. culinaris Laird and Eston from L.c. ssp. culinaris ILL5588, and one restriction fragment polymorphism distinguished L.c. ssp. culinaris Laird and Eston from L.c. ssp. orientalis LO4. Twelve of 13 f₁ progeny and all F₅ progeny from the intrasubspecific crosses, and all F₁ progeny from intersubspecific crosses had only maternal mtDNA restriction fragments. One f₁ plant from an Eston x ILL5588 cross inherited mtDNA fragments from both parents. Nuclear DNA inheritance was biparental in all F₁ progeny.NRCC No. 38451     

Procedures for identifying S-allele genotypes of Brassica

Summary Procedures are described for efficient selection of: (1) homozygous and heterozygous S-allele genotypes; (2) homozygous inbreds with the strong self- and sib-incompatibility required for effective seed production of single-cross F₁ hybrids; (3) heterozygous genotypes with the high self- and sib-incompatibility required for effective seed production of 3- and 4-way hybrids.From reciprocal crosses between two first generation inbred (I₁) plants there are three potential results: both crosses are incompatible; one is incompatible and the other compatible; and both are compatible. Incompatibility of both crosses is useful information only when combined with data from other reciprocal crosses. Each compatible cross, depending on whether its reciprocal is incompatible or compatible, dictates alternative reasoning and additional reciprocal crosses for efficiently and simultaneously identifying: (A) the S-allele genotype of all individual I₁ plants, and (B) the expressions of dominance or codominance in pollen and stigma (sexual organs) of an S-allele heterozygous genotype. Reciprocal crosses provide the only efficient means of identifying S-allele genotypes and also the sexual-organ x S-allele-interaction types.Fluorescent microscope assay of pollen tube penetration into the style facilitates quantitation within 24–48 hours of incompatibility and compatibility of the reciprocal crosses. A procedure for quantitating the reciprocal difference is described that maximizes informational content of the data about interactions between S alleles in pollen and stigma of the S-allele-heterozygous genotype.Use of the non-inbred I_o generation parent as a known heterozygous S-allele genotype in crosses with its first generation selfed (I₁) progeny usually reduces at least 7 fold the effort required for achieving objectives 1, 2, and 3, compared to the method of making reciprocal crosses only among I₁ plants.Identifying the heterozygous and both homozygous S-allele genotypes during the I₁ generation facilitates, during subsequent inbred generations, strong selection for or against modifier genes that influence the intensity of self- and sib-incompatibility. Selection for strong self and sib incompatibility can be effective for both homozygous inbreds and also for the S-allele heterozygote, thus facilitating production of single-cross F₁ hybrids and also of 3-and 4-way hybrids.Department of Plant Breeding and Biometry paper No. 690     

Genetic recombination in the cephamycin producer,Streptomyces clavuligerus

Summary In order to study the mechanism of cephamycin production by streptomycetes and to use genetic recombination in strain development, we undertook genetic studies inStreptomyces lipmanii andS. clavuligerus. S. lipmanii crosses gave 0.005–1.3% prototroph-like colonies, but all segregated back to parental genotypes. Crosses ofS. clavuligerus resulted in lower frequencies of prototroph-like colonies, i.e., 0.00002–0.9%. In ade x ura and ade x his crosses, the recombinant progeny did not segregate back. In arg x ade and arg x his crosses, segregation occurred in about 50% of the progeny. These data demonstrate that true haploid recombinants occur in crosses ofS. clavuligerus. S. lipmanii yielded only heterokaryons and, therefore, is less suitable thanS. clavuligerus for further genetic study.     

An interchromosomal gene conversion of the Drosophila dunce locus identified with restriction site polymorphisms: a potential involvement of transposable elements in gene conversion

Summary Females heterozygous for the two alleles dnc ² and dnc ^M14 of the X-linked gene dunce (dnc), and carrying a copy of dnc ⁺ progeny X-chromosomes from recombination experiments. Restriction site polymorphisms have been used as genetic markers to follow the parentage of dnc locus segments in these chromosomes. All six chromosomes are identical with respect to the spectrum of restriction site markers they carry in the dnc ⁺ chromosomal region. In the progeny chromosomes, this region is comprised of sequences like the dnc ^M14 X-chromosome and the translocation copy of dnc ⁺. Sequences flanking the dnc gene in the progeny chromosomes are like the dnc ^M14 chromosome. Internal to the gene but near the 5 end, is a segment from the dnc ⁺ translocation which has apparently originated from an interchromosomal and premeiotic gene conversion event. In addition, two transposable elements have inserted into the progeny chromosomes, one towards the 5 end of dnc and the other near the 3 end. The insertion of these elements occurred premeiotically since all six chromosomes are structurally identical. The data are interpreted with respect to a potential role of transposable element transposition in the process of gene conversion.     

The supernumerary segment system of Stethophyma

Three species of the genus Stethophyma carry supernumerary heterochromatic segments. The European species, S. grossa, has segments located close to the centromere on the S₁₁ chromosome pair, while the North American species, S. lineatum and S. gracile, have both interstitial and terminal segments on the S₁₀ and S₁₁ chromosomes. The latter species show a high degree of segment variation between individuals and the interstitial segments also show variation in size. The presence of segments on the S₁₀ and S₁₁ chromosomes, whether homozygous or heterozygous, modifies the pattern of chiasma distribution in these chromosomes when compared with that found in the basic homozygotes. When interstitial, they also lead to a high frequency of ring bivalents.Two points suggest that interstitially located supernumerary segments may prove to be more common than has previously been accepted. Firstly, combined equational and reductional segregation in unequal bivalents is only otherwise explicable in terms of chiasma formation in a short arm. Secondly the rod chromosomes of many Acridids may well be telocentric as in the case under study.It is proposed that these segments have arisen through a process of duplication with no evidence of interchromosomal movement.On educational leave from the Forest Research Laboratory, Canadian Forestry Service, Fredericton, New Brunswick, Canada.     

Study of RecA-Independent Homologous Recombination and a Chromosomal Rearrangement in the Escherichia coli Strain Carrying an Extended Heterozygous Tandem Duplication

A heterozygous tandem duplication in the Escherichia coli deo operon region deoAdeoB::Tn5/ deoCdeoDthr::Tn9 with the total length approximately 150 kb, which was obtained in the conjugational mating in the HfrH strain, was examined. By means of digestion with the NotI enzyme, pulsed-field gel electrophoresis, and the conjugational transfer of the duplication in the F^– strain, the chromosomal rearrangement, which occurred in the duplication region upon its stabilization in the bacterial genome, was studied. In a more stable strain, two new NotI sites were shown to appear in the chromosomal region located close to the duplication, which might have resulted from the transposition of the IS50 sequence from Tn5. The data were also obtained indicating the possibility of secondary transposition of the chromosomal segment between the two new NotI sites (approximately 30 kb) in the region located near the duplication. With the use of rec ⁺ and recA strains, two types of haploid and diploid segregants generated by the duplication were studied: DeoD⁺ (the deoD⁺ allele is not expressed in the original duplication due to the polar effect of the deoB::Tn5 insertion) and DeoC DeoD. The segregation of DeoD⁺ clones was shown to be RecA-dependent, whereas the DeoC DeoD segregants selected on the medium that contained thymine at a low concentration (i.e., under conditions of thymine starvation) appeared at a rather high frequency. However, the relative frequency of haploid clones, which have lost the duplication, strongly decreased in the recA genome among segregants of both types.     

Rearrangements at the mating type locus in fission yeast

Summary Crosses involving the partially defective mating type mutant B102 (functional in conjugation, defective in meiosis) have confirmed the notion that, in Schizosaccharomyces pombe, certain mating type mutations can arise by transposition. A copy of the mat2 ^P segment (specifying + mating type) is transposed and inserted into the mat1 ^M segment (usually specifying mating type). The mat1 ^M segment affected by the insertion loses its former function entirely. The function is, however, fully regained upon excision of the transposed and inserted mat2 ^P segment.At either position, the mat2 ^P segments can undergo inactivations to different states of residual activity. These events can occur about as frequent as other mutations of the mating type locus (ca. 10^–4 per cell division). In certain diploid strains, such inactivations were significantly correlated with recombination. Spontaneous reversions to full activity were also observed.     

Magnification of rRNA gene number in a Neurospora crassa strain with a partial deletion of the nucleolus organizer

Some progeny from crosses between the Neurospora crassa translocation strain T(IL VL)OY321 and normal sequence N. crassa strains are duplication strains with a partial deletion of the nucleolus organizer. Despite the deletion, these progeny are viable and produce a functional nucleolus. Quantification of rRNA gene number in these deletion progeny demonstrated a significant loss of rRNA genes, down to 60% of the parental wild-type level. Initially, all of these reduced nucleolus organizer (RNO) strains demonstrated a reduction in the rate of mycelial elongation in growth tubes. After several vegetative growth cycles some progeny reverted to the normal growth phenotype, and also showed an increase in the number of rRNA genes to approximately that of the wild type.     

Phylogenetic relationships of Triticum tauschii the D genome donor to hexaploid wheat

Summary In crosses between T. tauschii (D ^t) accesions, their polymorphic gliadin forms were inherited as blocks of gliadin components -Gli-D ^t1, Gli-D ^t2 — as single Mendelian characters. From the progeny of four tri-parental crosses (test-crosses), HMW glutenin subunits derived from T. tauschii (Glu-D ^t1) segregated as alleles of the Glu-D1 locus in bread wheat. In three of the tri-parental crosses, a small proportion (2.5%) of the progeny with atypical segregation patterns, were identified through somatic chromosome counts, to be aneuploids (1.9% hypoploids and 0.6% hyperploids). Chromosomal mapping studies revealed that the synteny of genes for HMW glutenin subunits and gliadins in T. tauschii are conserved in the D genome homologue (chromosome 1D) of T. aestivum. The map distance between the Glu-D1/-D ^t1 and Gli-D1/-D ^t1 loci was calculated to be 63.5 cM, while a linkage to the centromere of 7.7–9.7 cM was estimated for the Glu-D1/-D ^t1 locus.     

Differential transmission of extra genome chromosomes in pentaploid blueberry

Summary Transmission of extra genome chromosomes by three Vaccinium ashei (2n=6x=72)/V. corymbosum (2n=4x=48) pentaploid hybrids backcrossed to the hexaploid species V. ashei was examined. Chromosome numbers were determined for 36 and 31 progeny representing 5x × 6x and 6x × 5x type crosses, respectively. Chromosome numbers ranged from hypopentaploid (2n=4x+11=59) to hexaploid with means of 2n=66.2 for 5x × 6x progeny and 2n=68.0 for 6x × 5x progeny, representing overall extra genome chromosome gains of 3.3% and 33.3%, respectively. Extra chromosome number distributions for both the 5x × 6x and x × 5x progeny deviated significantly from the theoretical distribution assuming random chromosome transmission and were also found to be heterogeneous. The 2n=5x+9=69 class predominated in 6x × 5x progeny, while a predominate class was lacking in the 5x × 6x progeny. Higher than expected frequencies of plants with chromosome numbers near the pentaploid and hexaploid levels were found in the 5x × 6x progeny, whereas the frequency was only greater at the hexaploid number in 6x × 5x progeny. Present and previous results (Vorsa et al. 1986) indicate that extra genome chromosome transmission in oddploids can be influenced by selection at both gametophytic (pollen) and post-zygotic stages. However, post-zygotic selection may involve two different mechanisms acting concurrently: 1) chromosome imbalance due to aneuploidy and/or 2) endosperm imbalance referring to maternal: paternal genome ratios deviating from 21. Such a mechanism could result in differential transmission rates of extra genome chromosomes in oddploids when crosses are made to differing ploidy levels, and to reciprocal differences as well.     

Use of Ac as an insertional mutagen in Arabidopsis

A pilot-scale transposon mutagenesis experiment using a modified autonomous Activator (Ac) element, AcΔNael, was carried out in Arabidopsis thaliana. Four different transformants carrying Ac elements in different and defined genomic locations were used to generate 1000 plants carrying approximately 500 independent germinal transposition events. These plants were then selfed and the 1000 families screened in tissue culture and soil for phenotypic mutants. Fifty different families segregated mutations in their progeny. Preliminary Southern blot analysis of 29 families which segregated mutant progeny, showed that 28 had a transposed Ac. Six of the families were further tested for linkage between the transposed Ac and the mutant phenotype, and instability of the putatively tagged locus. Two of the mutants were shown to be tagged as they were tightly linked to a transposed Ac, and somatic and germinal reversion was associated with loss of Ac. One other mutant locus was shown to be closely linked to a transposed Ac, and therefore was likely to be tagged. The remaining three mutations were not tagged as they were not linked to a transposed Ac. In two of the tagged mutants Ac had transposed to closely linked sites, while in a third mutant the co-segregating Ac had transposed to a site which was not tightly linked to the donor T-DNA. Multiple insertions into the DIF1 locus were found, due to the preferential transposition of Ac to a linked site.     

Endosperm dosage relationships among Lycopersicon species

Summary Accessions of eight Lycopersicon species and five yellow-flowered Solanum species were used as males in crosses with 2x and 4x L. esculentum to observe seed set and progeny ploidy. Species which failed in crosses to L. esculentum were crossed as males to 2x and 4x L. peruvianum. In cases of low seed set, chromosome counts were undertaken to establish the nature of the progeny. Endosperm Balance Number (EBN) relationships were determined for the crossability groups. Results support the basic concept of an L. esculentum crossability complex and an L. peruvianum crossability complex. Within the L. esculentum complex, all EBNs appear identical with a value of 2. Within the L. peruvianum complex, more variability appears to exist. The EBN values of this group are higher, and may be approximately double those of the L. esculentum complex. The EBN of L. peruvianum var humifusum appears to be somewhat lower than other L. peruvianum types. The EBN values of S. lycopersicoides, S. rickii, S. ochranthum and S. juglandtfolium could not be determined experimentally. Differential aspects of Lycopersicon and tuber-bearing Solanum evolution may be interpreted on the basis of endosperm compatibility.Co-operative investigation of the Vegetable Crops Research Unit, U.S. Department of Agriculture, Agricultural Research Service, and the Wisconsin Agricultural Experiment Station     

Cytogenetics of nucleolus-rranspositions in Drosophila melanogaster

Summary The results from cytological identification of 125 radiation-induced specificlocus mutations revealed that the relative frequency of nucleolus-associated rearrangements could be increased substantially by selection of specific types of position-mutations for cytological analysis.One of the five nucleolus-involved rearrangements investigated was an inversion, In(1)lz ^sB, and four were deletion-insertions: Tp(1)ct ^6a1, Tp(1)lz ⁴⁹¹, Tp(1)lz ¹⁴⁴ and Dp(1;3)in ^61j2.The cytomorphology of the transposed nucleolus and associated bands was easier to resolve in the salivary gland chromosomes of the rearrangements than when the nucleolus was in its normal position in the proximal region of the X-chromosome. However, the extent of the NO and adjacent chromatin involved in the transposition could not be positively delimited because of the tendency for a variegation-type alteration in the morphology of the bands adjacent to the transposed nucleolus.This investigation was supported in part by U.S. Public Health Service Research Grant, GM 15009, and in part by a grant from the Finnish National Research Council for Sciences.