Syntheses, crystal structures, and magnetic properties of Ni(mnt)2-based molecular solids containing substituted isoquinolinium

Two novel ion-pair complexes, [RBzIQl]⁺[Ni(mnt)₂]⁻ (mnt²⁻ = maleonitriledithiolate, [RBzIQl]⁺ = 4-R-benzylisoquinolinium; R = H (1), Cl (2)) have been characterized structurally and magnetically. The anions and [BzIQl]⁺ cations of 1 form 1D column of alternating between cations and anions via π?π stacking interaction between Ni(mnt)₂ plane and isoquinoline ring, and the Ni(mnt)₂ anions between adjacent columns exist C?N, C?N, and N?N interaction. The anions and cations of 2 stack into well-segregated columns in the solid state; and the Ni(III) ions form a 1D zigzag chain in a Ni(mnt)₂ column through intermolecular Ni?S, S?S, Ni?Ni or π?π interactions. The chain is uniform in 2 with the Ni?Ni distances of 3.784 Å. Magnetic susceptibility measurements for these complexes in the temperature range 1.8-300 K show that 1 exhibits antiferromagnetic coupling behavior, and 2 exhibits unusual magnetic phase transitions around 45 K. The overall magnetic behavior for 2 indicates the presence of antiferromagnetic interaction in the high-temperature phase (HT) and spin gap in the low-temperature phase (LT).     

Location and magnetic relaxation properties of the stable tyrosine radical in photosystem II

Dipolar interactions with neighboring metal ions can cause enhanced spin-lattice relaxation of free radicals. We have applied the theory of dipolar relaxation enhancement and shown that the dependence of the enhanced relaxation on the protein structure surrounding the free radical can be used to obtain distances from the free radical to the protein surface. To test the theoretical predictions, we have examined the effect of added Dy3+ complexes on the microwave power saturation of free radicals in two protein complexes of known structure: myoglobin nitroxide and the reaction center from Rhodobacter sphaeroides. Three cases have been considered: (1) metal ions bound to a specific site, (2) metal ions bound randomly over the protein surface, and (3) metal ions distributed randomly in solution. Only case 3, which assumes no specific binding, gave good agreement between the distances obtained by using the two model systems. The effect of added Dy3+ complexes on the microwave power saturation of signal IIslow from photosystem II (PSII) was used to determine the location of the stable tyrosine radical giving rise to signal IIslow. Assuming that the surface of a membrane-bound protein can be approximated as planar, we have obtained distances from the tyrosine radical to the membrane surface in thylakoids, in PSII membranes, and in Tris-washed PSII membranes. The distances we have determined are in good agreement with those predicted on the basis of a structural homology between the D1 and D2 subunits of PSII and the structurally characterized L and M subunits of the reaction center from purple non-sulfur bacteria. We have also examined the temperature dependence of the microwave power at half-saturation (P1/2) of signal IIslow from 4 to 200 K in dark-adapted PSII membranes. Above 70 K, the P1/2 increases as T2.5, which is consistent with a Raman relaxation mechanism.(ABSTRACT TRUNCATED AT 250 WORDS)     

Syntheses, structures and magnetic properties of three new ion-pair complexes containing transition metal bis(malconitriledithiolate) anion and radical cations

Three new ion-pair complexes (m-MPYNN)₂Ni(mnt)₂ (1), (p-MPYNN)₂Ni(mnt)₂ (2) and (p-MPYNN)₂Cu(mnt)₂ (3) (m- or p-MPYNNI = [3- or4- (4,4,5,5-tetramethyl-1-oxido-3-oxyl-4,5-dihydro-3H-imidazol-2′-yl)-1-methylpyridinium] iodide, mnt = maleonitriledithiolate) have been prepared and characterized by elemental analyses, IR, single crystal X-ray diffraction and magnetic susceptibility. In complex 1, the m-MPYNN cations form a centrosymmetric dimer, and the [Ni(mnt)₂]²⁻ anion lies on a center of inversion. Complexes 2 and 3 show layered packing, and the p-MPYNN cations lie between the layers of the anions. Magnetic susceptibility measurements in the temperature range 2-300 K show that the three complexes exhibit weak antiferromagnetic behaviors. The behavior of complex 1 was explained with the singlet-triplet model.     

Syntheses, crystal structures, and magnetic properties of two novel Ni(mnt)2-based molecular magnetic materials containing substituted triphenylphosphinium

Two novel molecular magnetic materials, [RBzTPP][Ni(mnt)₂] (mnt²⁻ = maleonitriledithiolate, [RBzTPP]⁺ = 4-R-benzyltriphenylphosphinium; R = CN (1), Cl (2)) were synthesized and characterized by X-ray diffraction, IR spectroscopy, and magnetic susceptibility measurements. In crystal of 1, the [Ni(mnt)₂]⁻ anions form a dimer via Ni?S and π?π stacking interactions between Ni(mnt)₂ planes, and the C-H?Ni and C-H?N H-bonding interactions are found between the [Ni(mnt)₂]⁻ anions and the neighboring [CNBzTPP]⁺ cations. The anions and cations of 2 stack into well-segregated columns in the solid state; and the Ni(III) ions form a 1D alternating chain in a Ni(mnt)₂ column through intermolecular Ni?S, or π?π interactions with the Ni?Ni distances of 3.900, 4.198, and 4.165 Å. Magnetic susceptibility measurements for these complexes in the temperature range 1.8-300 K show that the overall magnetic behavior for 1 and 2 indicates the presence of antiferromagnetic interaction, but 1 exhibits an activated magnetic behavior in the high-temperature (HT) region together with a Curie tail in the low-temperature (LT) region.     

Diverse functions and molecular properties emerging for CAX cation/H+ exchangers in plants

Steep concentration gradients of many ions are actively maintained, with lower concentrations typically located in the cytosol, and higher concentrations in organelles and outside the cell. The vacuole is an important storage organelle for many ions. The concentration gradient of cations is established across the plant tonoplast, in part, by high-capacity cation/H+ (CAX) exchange activity. While plants may not be green yeast, analysis of CAX regulation and substrate specificity has been greatly aided by utilizing yeast as an experimental tool. The basic CAX biology in ARABIDOPSIS has immediate relevance toward understanding the functional interplay between diverse transport processes. The long-range applied goals are to identify novel transporters and express them in crop plants in order to "mine" nutrients out of the soil and into plants. In doing so, this could boost the levels of essential nutrients in plants.     

An analysis of the electrical properties of a skeletal muscle fiber containing a helicoidal T system

The linear electrical properties of skeletal muscle fibers have been analyzed using lumped circuit analogues of helicoidal T system. The geometry of a helicoid is assumed to produce two electrical effects, modeled separately. One model is motivated by the pitch or tilt of the T system, which forces the current flowing in the lumen of the tubules to have a longitudinal projection. The second model is motivated by the longitudinal continuity of a helicoid, which forms a structure similar to a cable within the fiber. The pitch or tilting of the T system plane modified the longitudinal resistance of the fiber, making it slightly frequency dependent; however, the magnitude of the change was less than 0.1%. The longitudinal connections between T system networks had a more complicated effect; the magnitude of the correction was again less than 0.1%. The conclusion from this analysis is that a helicoidal T system, whose pitch is constrained by the sarcomere spacing, will not affect electrical signals recorded intracellularly in intact fibers.     

Syntheses, crystal structures, and magnetic properties of two new 1D molecular solids based on Ni(mnt)2 ion

Two novel ion-pair complexes, 1-(4′-bromo-2′-fluorobenzyl)isoquinolinium-bis(maleonitrile dithiolato)nickel(III), [BrFBzIQl] · Ni(mnt)₂ · 0.5MeCN (1) and 1-(4′-bromo-2′-flourobenzyl)-quinolinium-bis(maleonitriledithiolato)nickel(III), [BrFBzQl] · Ni(mnt)₂ (2) have been characterized structurally and magnetically. The anions and cations of 1 stack into columns in the solid state, respectively; and the Ni(III) ions form uniform stacking column with the Ni?Ni distances 4.061 Å within a column through intermolecular Ni?S, S?S, Ni?Ni or π?π interactions, while 2 forms 1D column of alternating between cations and anions via the hydrogen bonds, C?N, C?N, N?C, and π?π interactions. The changes of coupling constants were observed in these two complexes at 85 K for 1 and 70 K for 2. It is interesting that 1 undergoes a transition from antiferromagnetic to ferromagnetic phase and 2 does counter to that of 1.     

Diverse molecular mechanisms of translation initiation in prokaryotes

More than 30 years ago Shine and Dalgarno proposed a classic model of prokaryotic translation initiation, based on the central role of the mRNA-16S rRNA interactions. Since then basic research has greatly extended the view of this process, owing to rapid progress in experimental techniques and genome sequencing. This review focuses on bioinformatic data and experimental results obtained in vitro and in vivo, demonstrating the diversity of molecular mechanisms for ribosome recruitment in prokaryotes.     

Hairpin structures in DNA containing arabinofuranosylcytosine. A combination of nuclear magnetic resonance and molecular dynamics

Nuclear magnetic resonance (NMR) and model-building studies were carried out on the hairpin form of the octamer d(CGaCTAGCG) (aC = arabinofuranosylcytosine), referred to as the TA compound. The nonexchangeable protons of the TA compound were assigned by means of nuclear Overhauser effect spectroscopy (NOESY) and correlated spectroscopy (COSY). From a detailed analysis of the coupling data and of the NOESY spectra the following conclusions are reached: (i) The hairpin consists of a stem of three Watson-Crick type base pairs, and the two remaining residues, T(4) and dA(5), participate in a loop. (ii) All sugar rings show conformational flexibility although a strong preference for the S-type (C2'-endo) conformer is observed. (iii) The thymine does not stack upon the 3' side of the stem as expected, but swings into the minor groove. (This folding principle of the loop involves an unusual alpha t conformer in residue T(4).) (iv) At the 5'-3' loop-stem junction a stacking discontinuity occurs as a consequence of a sharp turn in that part of the backbone, caused by the unusual beta + and gamma t torsion angles in residue dG(6). (v) The A base slides over the 5' side of the stem to stack upon the aC(3) residue at the 3' side of the stem in an antiparallel fashion. On the basis of J couplings and a set of approximate proton-proton distances from NOE cross peaks, a model for the hairpin was constructed. This model was then refined by using an iterative relaxation matrix approach (IRMA) in combination with restrained molecular dynamics calculations. The resulting final model satisfactorily explains all the distance constraints.     

Engineering properties of separated manure solids

Separated manure solids were collected from three dairy farms with different solid-liquid separators to study the engineering properties of the material. The specific heat, thermal conductivity and mean dry particle density of the solids were determined. Equations to estimate thermal diffusivity and air-filled porosity were also developed.     

Electronic properties of some inorganic solids

A simple bonding model previously used to calculate cohesive energies is used to calculate electronic properties of simple solids. The model assumes that AB compounds of CN6 or 8 are completely ionic and that CN4 compounds, and metals, are completely covalent. It is then possible to calculate the electronic chemical potential, the work function and the average energy gap between filled and empty bands in insulators, semiconductors and conductors.     

Diverse polyubiquitin interaction properties of ubiquitin-associated domains

The ubiquitin-associated (UBA) domain occurs frequently in proteins involved in ubiquitin-dependent signaling pathways. Although polyubiquitin chain binding is considered to be a defining feature of the UBA domain family, the generality of this property has not been established. Here we have surveyed the polyubiquitin interaction properties of 30 UBA domains, including 16 of 17 occurrences in budding yeast. The UBA domains sort into four classes that include linkage-selective polyubiquitin binders and domains that bind different chains (and monoubiquitin) in a nondiscriminatory manner; one notable class ( approximately 30%) did not bind any ubiquitin ligand surveyed. The properties of a given UBA domain are conserved from yeast to mammals. Their functional relevance is further suggested by the ability of an ectopic UBA domain to alter the specificity of a deubiquitylating enzyme in a predictable manner. Conversely, non-UBA sequences can modulate the interaction properties of a UBA domain.     

Diverse biologic properties imparted by the c-fgr proto-oncogene.

The c-fgr proto-oncogene specifies a nonreceptor protein-tyrosine kinase, p55c-fgr, a member of the src family. In the present study, we have mutagenized c-fgr to mimic alterations found at the 3' end of the v-fgr oncogene and have investigated the biologic effects of normal and mutant p55c-fgr expression. Genes lacking 10 or 13 codons at the 3' end, as well as a gene encoding phenylalanine instead of tyrosine at codon 523, were potent oncogenes when transfected into NIH 3T3 cells. Specific enzymatic activities of the more highly transforming gene products were 3-4-fold greater than that of p55c-fgr. In vivo, the amount of tyrosine phosphorylation of cellular proteins was directly proportional to potency in focus-forming assays. These findings are the first to identify highly transforming mutations of the c-fgr proto-oncogene. The proto-oncogene was also active in transforming assays, demonstrably greater than that of a kinase-deficient mutant. Foci arising in c-fgr-transfected cultures expressed abundant enzyme that was normal by a number of criteria. In addition, growth rates for cells expressing p55c-fgr were restricted, as compared with cells expressing a kinase-deficient protein or cells transformed by proteins with high specific enzymatic activities. Thus, enzymatically active p55c-fgr can simultaneously activate transforming and growth inhibitory pathways.     

Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites

A 4'-oxidized abasic site (X) has been synthesized in a defined duplex DNA sequence, 5'-d(CCAAAGXACCGGG)-3'/3'-d(GGTTTCATGGCCC)-5' (1). Its structure has been determined by two-dimensional NMR methods, molecular modeling, and molecular dynamics simulations. 1 is globally B-form with the base (A) opposite X intrahelical and well-stacked. Only the alpha anomer of X is observed, and the abasic site deoxyribose is largely intrahelical. These results are compared with a normal abasic site (Y) in the same sequence context (2). Y is composed of a 60:40 mixture of alpha and beta anomers (2alpha and 2beta). In both 2alpha and 2beta, the base (A) opposite Y is intrahelical and well-stacked and the abasic site deoxyribose is predominantly extrahelical, consistent with the reported structures of the normal abasic site in a similar sequence context [Hoehn, S. T., Turner, C. J., and Stubbe, J. (2001) Nucleic Acids Res. 29, 3413-3423]. Molecular dynamics simulations reveal that the normal abasic site appears to be conformationally more flexible than the 4'-oxidized abasic site. The importance of the structure and flexibility of the abasic site in the recognition by the DNA repair enzyme Ape1 is discussed.     

Diverse cellular and molecular mechanisms contribute to epithelial plasticity and metastasis

In contrast to the aberrant control of proliferation, apoptosis, angiogenesis and lifespan, the cellular mechanisms that cause local invasion and metastasis of tumour cells are still poorly understood. New experimental approaches have identified different types of epithelial-plasticity changes in tumour cells towards fibroblastoid phenotypes as crucial events that occur during metastasis, and many molecules and signalling pathways cooperate to trigger these processes.     

Syntheses, structures, and magnetic properties of two new molecular magnets containing Ni(mnt)2 monoanion and substituted 4-dimethylaminopyridinium

Two new molecular magnets, [BzPyN(CH₃)₂][Ni(mnt)₂] (1) and [NO₂BzPyN(CH₃)₂][Ni(mnt)₂] (2)([BzPyN(CH₃)₂]⁺ = 1-benzyl-4-dimethylaminopyridinium, [NO₂BzPyN(CH₃)₂]⁺ = 1-(4′-nitrobenzyl)-4-dimethylaminopyridinium, and mnt²⁻ = maleonitriledithiolate) have been prepared and characterized by elemental analyses, IR, MS spectra, single crystal X-ray diffraction and magnetic susceptibility. The Ni(III) ions of both 1 and 2 form a 1D zigzag alternating magnetic chain within a column through Ni?S, Ni?Ni, Ni?N, S?S, or π?π interactions. Magnetic susceptibility measurements in the temperature range 1.8-300 K show that 1 exhibits antiferromagnetic behavior, while 2 shows a spin gap transition around 170 K, and antiferromagnetic interaction in the high-temperature phase (HT) and spin gap in the low-temperature phase (LT). The phase transition for 2 is second-order by determination of DSC analyses.