Threatened Alvar Grasslands in NW Russia and their Relationship to Alvars in Estonia

Alvar grasslands are thin-soil calcareous grasslands on Silurian and Ordovician limestone bedrock. They are considered unique plant communities for northern Europe and America with a high conservation value. Until now, European alvar grasslands have only been described in Sweden and Estonia. We described species-rich alvar grasslands on the Izhora plateau, NW Russia and compared this vegetation with that of Estonian alvar grasslands. Floristic composition and environmental conditions of Russian alvars were similar to Estonian alvar grasslands on thicker dry soil. Russian alvars are isolated from similar communities in Estonia, but extensive transport of domestic animals from Estonia to NW Russia in past centuries has probably enhanced species dispersal. Some characteristic Estonian alvar species were missing in NW Russia because it lies outside their natural ranges. Other differences in vegetation were explained by higher atmospheric nitrogen deposition and younger age of Russian sites. In NW Russia the alvar grasslands were small, but several red-listed plant species were present. In order to preserve European alvar vegetation effectively, Russian alvar grasslands need further study and conservation as an outpost of this threatened vegetation type.     

Epiphytic lichens on Juniperus communis – an unexplored component of biodiversity in threatened alvar grassland

Semi‐natural grasslands, among them thin‐soil calcareous grasslands (alvars), have great conservation value but have become increasingly rare in Europe. The main threat to alvar grasslands is the encroachment by juniper Juniperus communis and therefore it is usually removed during the restoration practice. Juniper can also be a host plant for many epiphytic lichens, but its role as a phorophyte is poorly known. We studied epiphytic lichen diversity on 126 junipers in 17 sites in western Estonia and found 140 lichenized taxa including several rare and red‐listed species. Using indirect and direct multivariate analyses (DCA, pCCA) and general linear models we revealed that both habitat and phorophyte properties affect lichen assemblies on juniper. Lichen species richness per site showed a unimodal relationship with compound factors of site productivity and juniper characteristics (stem circumference and juniper width). Lichen species richness per phorophyte was increasing with its size and with the proportion of dead branches, and was twice higher in plate alvars than in ryhk alvars. Also, the species composition in plate alvars differed from ryhk alvars by having 42 characteristic lichen species in plate alvars vs three indicators of ryhk alvars. The composition of lichens was significantly influenced by encroachment of alvars, e.g. by high juniper cover and shrub layer height, as well as by the proportion of dead branches and stem circumference of juniper. We conclude that the epiphytic lichen assemblies on junipers are threatened by grassland encroachment similarly to ground layer lichen assemblies. We suggest that some old and scencent junipers should be preserved during the restoration of alvar grasslands.     

The seed bank in an estonian calcareous grassland: Comparison of different successional stages

Seed bank species-composition and seed-density were determined in a successional calcareous (alvar) grassland in western Estonia. Three similar study areas were chosen to compare two different successional stages: open alvar grassland and overgrown areas with young pine forest 30 to 40 years old. In both successional stages, the centre and the edge of a relatively uniform stand were examined. Fifteen soil samples (7 cm in diameter, 5 cm deep) were taken from each of twelve sampling sites. The seedling emergence method was used to estimate seeds in the soil samples. A total of 69 species were detected in the seed bank, of which 18 did not occur in the vegetation. Eighty-nine taxa were recorded in the vegetation and of these 38 were not detected in the seed bank. Fifty-one species occurred both in the seed bank and in the vegetation. The three most abundant taxa in the seed bank wereCarex tomentosa, Linum catharticum andPlantago media, which together made up 49% of the seedlings recorded. Differences in the species compositions of seed bank samples from grassland and forest sites were negligible, although the species richness per area of the above-ground vegetation was significantly higher in the open grassland. The only species tending to be lost from forest site vegetation but still occurring in the forest soil seed bank wereArenaria serpylifolia, Cerastium fontanum andLinum catharticum. About half of all the emerged species from all samples belonged to the transient or short-term persistent seed bank. In the grassland sites there were more species which belonged to the transient seed bank than in the forest sites, where the seed bank contained more short-term persistent type seeds. The seed density was significantly higher in forest sites and lower in grassland sites, which may be explained by the better germination conditions in well-illuminated communities. On the basis of the current study it might be assumed that the soil seed banks of overgrown alvar grasslands which include young pine forests can play a certain role in grassland restoration management.     

Invasion of woody species into temperate grasslands: Relationship with abiotic and biotic soil resource heterogeneity

Question: Invasion of woody species into grasslands is a global phenomenon. This is also topical in semi‐natural temperate grasslands that are no longer profitable for agricultural management. Trees and grasses interact through harsh root competition, but below‐ground processes have been neglected in the dynamics of semi‐natural grasslands. Trees are thought to have a competitive advantage in resource‐rich and heterogeneous soils. We tested whether soil resource quantity and heterogeneity differ between paired temperate semi‐natural grasslands and forests (former grasslands), and whether this was caused abiotically by varying soil depth or biotically by fine roots. Location: Thin‐soil calcareous alvar grasslands with overgrown parts (young Pinus sylvestris forests) in W. Estonia. Methods: The quantity and spatial heterogeneity of soil resources (moisture and nutrients), soil depth, and root parameters (mass, length and specific length) were measured in 1‐m transects of 11 samples in 26 paired grasslands and forests. The quantity and heterogeneity of soil resources were compared between vegetation types and related to soil depth and root parameters. Results: Soil resources were lower and more heterogeneous in forests than in grasslands. The invasion of woody species was enhanced abiotically by deeper soil. Root mass was larger in the forests, but root length was longer in the grasslands. Both root mass and specific root length were more heterogeneous in the forests. Forest root length was negatively correlated with transient soil moisture patches and positively correlated with more persistent nutrient‐rich patches. No such relationship was found in grasslands. Conclusions: Abiotic soil heterogeneity (local deep‐soil patches) supports woody species invasion, but the trees themselves also biotically make soils more heterogeneous, which further enhances woody species invasion. Large trees use soil resources patchily, making soils biotically poorer and more heterogeneous in resources. The dynamics of temperate semi‐natural grasslands are strongly linked to below‐ground ecological processes, and high soil heterogeneity can be both the cause and the outcome of woody species invasion.     

Secondary Rain Forests are not Havens for Reptile Species in Tropical Mexico

A widely accepted biodiversity crisis in the tropics has been recently challenged by claims that secondary forests will gradually restore biodiversity losses. This prediction was examined for the herpetofauna in Quintana Roo, Mexico. Quantitative sampling (108 transects) of reptiles was undertaken monthly (January–September 2004) along a vegetation gradient covering induced grasslands, and regrowth and primary rain forests. A total of 35 species was found, 14 being present in and five showing dependence on mature forests. Lizards contributed > 90 per cent of the individuals observed. Reptile abundance and snake species richness was highest in primary forests, even though the lower abundance and richness did not differ between regrowth forest and induced grasslands. Multivariate ordinations and ANOSIM tests displayed clear differences in assemblage structure among vegetation types, mainly caused by contrasting abundances of lizard species having distinctive arboreal or terrestrial habits. There was no evidence that snake assemblages differed between secondary forests and induced grasslands. Microhabitat availability had a key role in shaping species composition through the vegetation gradient. Our results dismiss the hypothesis that secondary forests can act as reservoirs of primary forest reptile diversity on the basis that many taxa depend largely on habitat quality and have specialized life‐history traits, and that biological succession does not guarantee the recovery of assemblage complexity.     

High Species Richness of Scinax Treefrogs (Hylidae) in a Threatened Amazonian Landscape Revealed by an Integrative Approach

Rising habitat loss is one of the main drivers of the global amphibian decline. Nevertheless, knowledge of amphibian diversity needed for effective habitat protection is still highly inadequate in remote tropical regions, the greater part of the Amazonia. In this study we integrated molecular, morphological and bioacoustic evidence to evaluate the species richness of the treefrogs genus Scinax over a 1000 km transect across rainforest of the Purus-Madeira interfluve, and along the east bank of the upper Madeira river, Brazilian Amazonia. Analysis revealed that 82% of the regional species richness of Scinax is still undescribed; two nominal species, seven confirmed candidate species, two unconfirmed candidate species, and one deep conspecific lineage were detected in the study area. DNA barcoding based analysis of the 16s rRNA gene indicates possible existence of three discrete species groups within the genus Scinax, in addition to the already-known S. rostratus species Group. Quantifying and characterizing the number of undescribed Scinax taxa on a regional scale, we provide a framework for future taxonomic study in Amazonia. These findings indicate that the level to which Amazonian anura species richness has been underestimated is far greater than expected. Consequently, special attention should be paid both to taxonomic studies and protection of the still-neglected Amazonian Scinax treefrogs.     

Deadwood-rich managed forests provide insights into the old-forest association of wood-inhabiting fungi

A major question in fungal conservation is why many species are confined to old forests, and how they could be supported by contemporary landscape matrix. Specifically, forestry that retains large biological legacies across landscape could reduce old-forest dependencies to species that require unusual substrate conditions. We sampled polypores in 112 2 ha plots (both old and harvested stands) in a semi-natural forestry context in Estonia and modelled the habitat factors of species confined to old growth. The results confirmed that old-growth assemblages emerged mostly due to diverse and abundant substrate supply (notably downed CWD). Only 10 species (five spruce-dwellers) were confined to old growth; of these, only Fomitopsis rosea and Oxyporus corticola were additionally affected by forest connectivity. The forestry system studied appeared particularly favourable for the species inhabiting deciduous wood. To better address habitat degradation in conservation, expert lists of ‘old-forest (indicator) fungi’ should be replaced with evidence-based focal taxa.     

Responses of a rare (Viola elatior) and a common (Viola mirabilis) congeneric species to different management conditions in grassland — is different light competition ability responsible for different abundances?

We studied a congeneric species pair that shows very different abundances in Estonia — Viola elatior occurs in only five localities in mesic calcareous grasslands, while Viola mirabilis is abundant in mesic calcareous grasslands and forests all over the country. Both species were sown in patches of mesic calcareous grassland, in clipped and untreated plots. Both species were established successfully after sowing, indicating that they both may be dispersal limited to the same extent. V. elatior showed higher fecundity in the second year than V. mirabilis. V. elatior was more sensitive to the availability of light. In the first year, V. elatior established more successfully in clipped plots than V. mirabilis. In the second year, the number of established V. elatior individuals decreased in unmanaged plots, where competition for light was more severe. Since many calcareous grasslands in Estonia have been abandoned and the standing crop, as well as the cover of shrubs and trees, has increased, sensitivity to light competition may be one reason why V. elatior has become more rare. It cannot be the only reason for its rarity in the whole region, since many other grassland species that are vulnerable to reduced light in overgrown unmanaged grassland communities still occur in much higher numbers in the country. It was hypothesised that historical factors, e.g. relatively late arrival in the region, may also be behind the rarity of V. elatior.     

Diversity of plant assemblages in isolated depressional wetlands from Central-Western Europe

A closed depression is defined as a geomorphologic element where a sediment depository is encircled by hillslopes. Despite the fact that closed depressions are often the only stagnant water points in many European landscapes, few ecological researches on their plant assemblages have been done. The main goal of this study was to give first results of the environmental factors responsible for the vegetation composition, richness and rarity in the closed depressions of the Lorraine biogeographical district (Belgium, France and grand-duché de Luxembourg). We surveyed for plant presence 85 forest and 77 grassland closed depressions. For each site, wetland area, local environmental factors and regional connectivities registered. For each species, the Ellenberg values were compiled. To investigate the main source of variation in species composition and in species richness (including richness in rare species), Non-metric Multidimensional Scaling analyses and Generalized Linear Models were respectively used. Species pools in forest (forest and preforest species) and in grassland (bog plants, pioneers, helophytes) were quite different. In both landscapes, a gradient from plants typical of basic high-productive soils to plants typical of acid low-productive soils reflects a shared successional gradient. The accumulation of organic matter allowed the establishment of Sphagnum spp., which slowly acidified the soil and thus acted as ecosystem engineers for the arrival of bog plants. Moreover, the species composition was additionally driven by the plant light tolerance in forests and by the plant water requirements in grasslands. Mechanisms of species accumulation (increase in species richness) were different in forests and in grasslands: respectively related to the plant light tolerance and to the wetland area. At the regional level, the averaged soil productivity was negatively related to the richness in rare species. Indeed, perennial highly-competitive plants such as Glyceria spp., Iris pseudacorus or Urtica dioica impeded the establishment of smaller and rarer species. At the habitat level, isolated closed depressions (due to either low connectivity or low grazing pressure) have more habitat rare species, giving evidences of dispersal limitation in plant assemblages of closed depressions.     

Rare and threatened plant communitiesof Estonia

This paper introduces the criteria for identifying rare and threatened plant communities in Estonia. An overview of such communities is given and the general problems associated with their protection are briefly discussed. Of forest communities, alvar forests and boreo-nemoral forests must be preserved very carefully. Once widely distributed minerotrophic mobile-water swamp forests and flood plain forests nowadays cover only a small area. Numerous rare communities are associated with coastal regions and islands. Wooded meadows, the most species rich vascular plant communities in northern Europe, as well as flooded meadows and many other communities require continuation of traditional management for their preservation.     

Amphibian communities along a forest degradation gradient in an East African forest reserve

The amphibian communities in Africa's tropical forests are of global conservation importance, but disturbances derived from anthropological activities threaten to dismantle this irreplaceable diversity. We explored the impacts of forest degradation on the amphibian community in Mabira Central Forest Reserve, Uganda. We sampled amphibians from March to July of 2015 in plots that were positioned along a gradient of forest degradation. We conducted visual encounter surveys across three categories of forest degradation with six 300-m transects in each (four surveys per transect). From 216 h of surveyor effort, we detected 3563 individual frogs representing 30 species from eight families and 13 genera. Hyperoliidae was the most diverse family represented by 13 species in four genera. Hyperolius had the highest number of species (nine) followed by four genera each represented by three species (Phrynobatrachus, Pytchadena, Leptopelis, and Sclerophrys). Comparisons among plots along a gradient of forest degradation revealed differences in species richness, composition, and frequency of encounters. The regenerating and degraded forest plots were similar in species composition to each other and were dominated by mostly widespread, open-canopy species. Several forest-dependent species were recorded in both the regenerating and mature forest plots but were absent from the degraded plots. In the regenerating and mature forests, species presence was significantly associated with high canopy cover, high relative humidity, and dense leaf litter, whereas the microhabitat variables of high grass cover and high temperature were most influential in the degraded forests. Our study provides important data on an Afrotropical amphibian community and suggests that forest degradation has dramatically altered the habitat to the detriment of forest specialist species.     

Forest cover reduces thermally suitable habitats and affects responses to a warmer climate predicted in a high-elevation lizard

Warmer climates have affected animal distribution ranges, but how they may interact with vegetation patterns to affect habitat use, an important consideration for future wildlife management, has received little attention. Here, we use a biophysical model to investigate the potential thermal impact of vegetation pattern on the habitat quality of a high-elevation grassland lizard, Takydromus hsuehshanensis, and to predict the thermal suitability of vegetation for this species in a future warmer climate (assuming 3 °C air temperature increase). We assess the thermal quality of vegetation types in our study area (Taroko National Park in areas >1,800 m) using three ecologically relevant estimates of reptiles: body temperature (T _b), maximum active time, and maximum digestive time. The results show that increasing forest canopy gradually cools the microclimates, hence decreasing these estimates. In the current landscape, sunny mountain-top grasslands are predicted to serve as high quality thermal habitat, whereas the dense forests that are dominant as a result of forest protection are too cold to provide suitable habitat. In simulated warmer climates, the thermal quality of dense forests increases slightly but remains inferior to that of grasslands. We note that the impact of warmer climates on this reptile will be greatly affected by future vegetation patterns, and we suggest that the current trend of upslope forest movement found in many other mountain systems could cause disadvantages to some heliothermic lizard species.     

Differentiation of vegetation zones and species strategies in the subalpine region of Mt. Fuji

The floristic and structural differentiation of vegetation along the altitudinal gradient in four subalpine forests of different developmental stages on Mt. Fuji has been studied. Near the forest limit a micropattern of vegetation corresponding to the altitudinal zonation has been observed which elucidated the mechanisms of development of the vegetation zonation. As to early stages of vegetation development only two types can be distinguished: the volcanic desert above 1500 m and the pioneer forests below. As to later stages a differentiation of subzones includes from higher to lower altitudes: the Alnus maximowiczii, Betula ermanii, Abies veitchii and Tsuga diversifolia forests. Larix leptolepis and Sorbus americana ssp. japonica, appear as co-dominants in ecotonal communities between the principal subzones and are also important pioneers in early stages. Similarity analyses reveal that the upper subalpine Alnus-Betula forests can be regarded as early successional phases of the climax Abies-Tsuga forests of the lower subalpine zone. The regular arrangement of A. maximowiczii-B. ermanii-A. veitchii is studied along the gradient from the margin to the interior of the forest growing near the forest limit where locally favourable conditions prevail. Growth form, height growth, photosynthetic activity, seed supply, and seedling distribution of the three principal species have been compared, as well as biomass and production relations in contiguous forests of these species. The marginal Alnus type community is productive and disturbance-tolerant, and has a wide ecological and sociological amplitude along the gradient, while the central Abies community is accumulative and disturbance-intolerant, and has a narrower tolerance range, but is superior in competition under stable habitat conditions. A vegetation organization, ‘temporal multi-storeyed structure’, is suggested which means that a zonal pattern of vegetation within a climax region develops by successive replacement of successional species along an environmental gradient.     

Genotypic and Phenotypic Diversity of Cyanobacteria in Biological Soil Crusts of the Succulent Karoo and Nama Karoo of Southern Africa

Biological soil crusts (BSCs) are communities of cryptogamic organisms, occurring in arid and semiarid regions all over the world. Based on both morphological identification and genetic analyses, we established a first cyanobacterial inventory using the biphasic approach for BSCs within two major biomes of southern Africa. The samples were collected at two different sites in the Succulent Karoo and one in the Nama Karoo. After cultivation and morphological identification, the 16S rRNA gene was sequenced from the cyanobacterial cultures. From the soil samples, the DNA was extracted, and the 16S rRNA gene sequenced. All the sequences of the clone libraries from soil and cultures were compared with those of the public databases. Forty-five different species were morphologically identified in the samples of the Succulent Karoo (observatories of Soebatsfontein and Goedehoop). Based on the genetic analyses, 60 operational taxonomic units (OTUs) were identified for the Succulent Karoo and 43 for the Nama Karoo (based on 95 % sequence similarity). The cloned sequences corresponded well with the morphologically described taxa in cultures and sequences in the public databases. Besides known species of typical crust-forming cyanobacterial genera (Microcoleus, Phormidium, Tolypothrix and Scytonema), we found sequences of so far undescribed species of the genera Leptolyngbya, Pseudanabaena, Phormidium, Oscillatoria, Schizothrix and Microcoleus. Most OTUs were restricted to distinct sites. Grazed soils showed lower taxa numbers than undisturbed soils, implying the presence of early successional crust types and reduced soil surface protection. Our combined approach of morphological identification and genetic analyses allowed both a taxa inventory and the analysis of species occurring under specific habitat conditions.     

Negative density dependence and environmental heterogeneity effects on tree ferns across succession in a tropical montane forest

Although tree ferns are an important component of temperate and tropical forests, very little is known about their ecology. Their peculiar biology (e.g., dispersal by spores and two-phase life cycle) makes it difficult to extrapolate current knowledge on the ecology of other tree species to tree ferns. In this paper, we studied the effects of negative density dependence (NDD) and environmental heterogeneity on populations of two abundant tree fern species, Cyathea caracasana and Alsophila engelii, and how these effects change across a successional gradient. Species patterns harbor information on processes such as competition that can be easily revealed using point pattern analysis techniques. However, its detection may be difficult due to the confounded effects of habitat heterogeneity. Here, we mapped three forest plots along a successional gradient in the montane forests of Southern Ecuador. We employed homogeneous and inhomogeneous K and pair correlation functions to quantify the change in the spatial pattern of different size classes and a case–control design to study associations between juvenile and adult tree ferns. Using spatial estimates of the biomass of four functional tree types (short- and long-lived pioneer, shade- and partial shade-tolerant) as covariates, we fitted heterogeneous Poisson models to the point pattern of juvenile and adult tree ferns and explored the existence of habitat dependencies on these patterns. Our study revealed NDD effects for C. caracasana and strong environmental filtering underlying the pattern of A. engelii. We found that adult and juvenile populations of both species responded differently to habitat heterogeneity and in most cases this heterogeneity was associated with the spatial distribution of biomass of the four functional tree types. These findings show the effectiveness of factoring out environmental heterogeneity to avoid confounding factors when studying NDD and demonstrate the usefulness of covariate maps derived from mapped communities.     

Effects of different types of low‐intensity management on plant‐pollinator interactions in Estonian grasslands

In the face of global pollinator decline, extensively managed grasslands play an important role in supporting stable pollinator communities. However, different types of extensive management may promote particular plant species and thus particular functional traits. As the functional traits of flowering plant species (e.g., flower size and shape) in a habitat help determine the identity and frequency of pollinator visitors, they can also influence the structures of plant−pollinator interaction networks (i.e., pollination networks). The aim of this study was to examine how the type of low‐intensity traditional management influences plant and pollinator composition, the structure of plant−pollinator interactions, and their mediation by floral and insect functional traits. Specifically, we compared mown wooded meadows to grazed alvar pastures in western Estonia. We found that both management types fostered equal diversity of plants and pollinators, and overlapping, though still distinct, plant and pollinator compositions. Wooded meadow pollination networks had significantly higher connectance and specialization, while alvar pasture networks achieved higher interaction diversity at a standardized sampling of interactions. Pollinators with small body sizes and short proboscis lengths were more specialized in their preference for particular plant species and the specialization of individual pollinators was higher in alvar pastures than in wooded meadows. All in all, the two management types promoted diverse plant and pollinator communities, which enabled the development of equally even and nested pollination networks. The same generalist plant and pollinator species were important for the pollination networks of both wooded meadows and alvar pastures; however, they were complemented by management‐specific species, which accounted for differences in network structure. Therefore, the implementation of both management types in the same landscape helps to maintain high species and interaction diversity.     

Hybrid ecosystems can contribute to local biodiversity conservation

Calcareous grasslands have become severely threatened habitats in Europe. The aim of this study was to investigate the changes in plant species richness, and functional and phylogenetic diversity in northern Estonian calcareous (alvar) grasslands resampled after 90 years of land-use change. Functional traits characterizing species that have benefited most from decreased habitat area and altered environmental conditions, and additional species that can potentially inhabit the remaining grassland patches were identified. Also changes in the relative amount of habitat-specific species were studied to detect a possible decrease in habitat integrity. Although grasslands in the studied region had lost most of their original area (~90 %), species richness had substantially increased due to invasion by more competitive, nutrient-demanding native species. Functional diversity generally increased, whereas phylogenetic diversity showed no response to altered conditions. Overall, these grasslands have lost their integrity as calcareous grassland habitat type in the region, because the relative amount of habitat-specific characteristic species has declined significantly. However, although the grasslands have transformed to a ‘hybrid’ habitat type and restoration to their previous state is likely not reasonable, such degraded species-rich grassland fragments can still be recognized as important habitats to preserve high local biodiversity and several characteristic species of calcareous grasslands. As current landscapes consist of an increasing number of hybrid and novel communities, new tools to supplement traditional conservation or restoration practices are necessary to recognize and maintain regions and habitats of high local biodiversity.     

Classification of habitats highlights priorities for conservation policies: The case of Spanish Mediterranean tall humid herb grasslands

The Mediterranean grasslands of Molinio-Holoschoenion are one of the lesser known natural habitat types of interest for conservation in the European Community. A study on their content with regard to their plant-communities and interest for plant conservation is conducted on a regional scale for the first time. A new comprehensive classification is proposed for this habitat type in Spain (Iberian Peninsula and Balearic and Canary Islands) where they have their highest European diversity. Twenty-five plant-community types are floristically identified by k-means clustering. Cluster analysis reveals a major hierarchical aggregation in two vegetation groups: (i) rush meadows of Scirpoides holoschoenus (L.) Soják; and (ii) communities of herbs and forbs dominated by Molinia caerulea (L.) Moench subsp. arundinacea (Schrank) H. Paul and/or Schoenus nigricans L. These groups are associated with different positions along a soil moisture gradient where rush formations occupy the positions farthest from the water table. Cluster Analysis also shows an uneven distribution of species with conservation interest. The highest content in endangered species is found in halophilous rushes. Grasslands on mineralised soils host the highest number of vulnerable species. Spanish Molinio-Holoschoenion plant communities were ranked using three criteria (regional responsibility, local rarity and habitat vulnerability) in order to set conservation priorities. The highest conservation values were achieved by coastal rush communities developing on dune slacks, and by forbs and rushes in the Baetic System growing on banks of streams with oligotrophic waters.     

Richness,species composition and functional groups in Agaricomycetes communities along a vegetation and elevational gradient in the Andean Yungas of Argentina

The Neotropics are among the least explored regions from a mycological perspective. A few recent molecular studies in South America have shown high fungal diversity as well as numerous groups of mostly undescribed taxa. Through soil metabarcoding analysis we compared richness and species composition among macrofungal communities, belonging to Agaricales, Russulales, Boletales and Phallomycetidae groups, in three elevational forests types in the subtropical Yungas of Northwestern Argentina (Piedmont forest; Montane forest, Montane cloud forest). The aims of this study were to assess richness of taxonomic and functional groups along the elevation gradient and to assess the relationships between environmental variables and species composition in the studied fungal communities. The results have shown rich Agaricomycetes communities, diversely structured among forests habitats. The elevation gradient differentially affected the richness and distribution of Agaricales, Russulales, Boletales and Phallomycetidae. Based on fungal trophic modes and guilds, the gradient also affected the ectomycorrhizal taxa distribution. When considering the basidiomata growth forms (agaricoid, boletoid, gasteroid, etc.), only the secotioid type showed significant elevational differences. Additional analyses indicated that saprotrophic nutritional mode was dominant along the entire gradient, being partially replaced by biotrophic modes at higher elevations. Fungal communities in the Montane cloud forests are most dissimilar when compared with communities at the Piedmont forest and Montane forest, which is consistent with the different biogeographic origins of these forests. DNA metabarcoding sequence analysis provided detailed information on the diversity and taxonomic and functional composition of macrofungal communities.