The Uto‐Aztecan premolar among North and South Amerindians: Geographic variation and genetics

The Uto‐Aztecan premolar (UAP) is a dental polymorphism characterized by an exaggerated distobuccal rotation of the paracone in combination with the presence of a fossa at the intersection of the distal occlusal ridge and distal marginal ridge of upper first premolars. This trait is important because, unlike other dental variants, it has been found exclusively in Native American populations. However, the trait's temporal and geographic variation has never been fully documented. The discovery of a Uto‐Aztecan premolar in a prehistoric skeletal series from northern South America calls into question the presumed linguistic and geographic limits of this trait. We examined published and unpublished data for this rare but highly distinctive trait in samples representing over 5,000 Native Americans from North and South America. Our findings in living Southwest Amerindian populations corroborate the notion that the variable goes beyond the bounds of the Uto‐Aztecan language family. It is found in prehistoric Native Americans from South America, eastern North America, Northern and Central Mexico, and in living and prehistoric populations in the American Southwest that are not members of the Uto‐Aztecan language stock. The chronology of samples, its geographic distribution, and trait frequencies suggests a North American origin (Southwest) for UAP perhaps between 15,000 BP and 4,000 BP and a rapid and widespread dispersal into South America during the late Holocene. Family data indicate that it may represent an autosomal recessive mutation that occurred after the peopling of the Americas as its geographic range appears to be limited to North and South Amerindian populations. Am J Phys Anthropol, 2010. © 2010 Wiley‐Liss, Inc.     

Radiocarbon and dendrochronology

The radiocarbon dating method relies on calibration through an independent dating method. Dendrochronology is an ideal partner of radiocarbon, because tree-rings are close-to-perfect archives of the atmospheric ¹⁴C level, and the tree-ring time scale can be built beyond doubt with high replication. Over the past 30 years, several stages of ¹⁴C calibration data sets have been constructed from the work of tree-ring laboratories in Europe and North America. This process is outlined and the present state is documented. In turn, ¹⁴C age fluctuations, caused mainly by helio-magnetic changes, can be used to anchor floating tree-ring sections to the calendar scale with a precision of a few decades.     

Distribution of Y chromosomes among native North Americans: a study of Athapaskan population history

In this study, 231 Y chromosomes from 12 populations were typed for four diagnostic single nucleotide polymorphisms (SNPs) to determine haplogroup membership and 43 Y chromosomes from three of these populations were typed for eight short tandem repeats (STRs) to determine haplotypes. These data were combined with previously published data, amounting to 724 Y chromosomes from 26 populations in North America, and analyzed to investigate the geographic distribution of Y chromosomes among native North Americans and to test the Southern Athapaskan migration hypothesis. The results suggest that European admixture has significantly altered the distribution of Y chromosomes in North America and because of this caution should be taken when inferring prehistoric population events in North America using Y chromosome data alone. However, consistent with studies of other genetic systems, we are still able to identify close relationships among Y chromosomes in Athapaskans from the Subarctic and the Southwest, suggesting that a small number of proto-Apachean migrants from the Subarctic founded the Southwest Athapaskan populations.     

The past,present and future of skeletal analysis in palaeodemography

The study of past population dynamics is imperative to our understanding of demographic processes in the context of biology, evolution, environment and sociocultural factors. Retrospective consideration of a population''s capacity to resist and adapt to change aims to contribute insights into our past, a point of comparison to the present and predictions for the future. If these aims are to be achieved, the accuracy and precision of palaeodemographic methods are of paramount importance. This article considers the emergence of skeletally based palaeodemographic methods, specifically life tables and demographic proxies, and early controversies and issues. It details the process of methodological development and refinement, and success in addressing many of the historical limitations. The contribution and potential of skeletally based methods are discussed and comparisons and contrasts made with alternative palaeodemographic approaches, and avenues for future research are proposed. Ultimately, it is concluded that skeletal analysis provides unique opportunities to investigate population dynamics with spatial specificity, examine individuals and groups within a population, and integrate demographic and pathological information to evaluate population health in the past.This article is part of the theme issue ‘Cross-disciplinary approaches to prehistoric demography''.     

Differential visibility of treponemal disease in pre‐Columbian stratified societies: Does rank matter?

Treponemal disease is known to be associated with the compromised community health of permanent village settlement. This association explains its high visibility in the village‐based, arguably chiefdom level, agriculturalist societies of late prehistoric (AD 1300–1600) North America. Within chiefdom‐level societies, health differences have often been demonstrated between mortuary‐defined “elite” and “nonelite” individuals. This theoretically should predict status‐based differences in treponemal disease visibility. The prediction is tested in a five‐site osteological sample (N = 650) from the Dallas phase (AD 1300–1550), a simple mortuary‐defined two‐tiered presumptive chiefdom level maize agriculturalist socioeconomic context from lower east Tennessee. The Dallas phase results affirm a general pre‐Colombian North American pattern of no sex differences and display comparable adult to subadult frequencies. The study also reveals that given a sufficient sample size, “elites” do indeed exhibit a significantly lower frequency of tertiary stage treponemal disease. This can be attributed to better baseline health, which has been previously demonstrated in this sample. It may also be affected by the mortuary inclusion of achieved status individuals whose good health may have facilitated sociopolitical advancement. Another pattern that emerged is an apparent young adult age bias in disease visibility. This suggests that tertiary treponemal disease morbidity may either directly or synergistically factor in early adult age at death. Future research will address the veracity of this association. Am J Phys Anthropol, 2011. © 2010 Wiley‐Liss, Inc.     

Native American mtDNA prehistory in the American Southwest

This study examines the mtDNA diversity of the proposed descendants of the multiethnic Hohokam and Anasazi cultural traditions, as well as Uto-Aztecan and Southern-Athapaskan groups, to investigate hypothesized migrations associated with the Southwest region. The mtDNA haplogroups of 117 Native Americans from southwestern North America were determined. The hypervariable segment I (HVSI) portion of the control region of 53 of these individuals was sequenced, and the within-haplogroup diversity of 18 Native American populations from North, Central, and South America was analyzed. Within North America, populations in the West contain higher amounts of diversity than in other regions, probably due to a population expansion and high levels of gene flow among subpopulations in this region throughout prehistory. The distribution of haplogroups in the Southwest is structured more by archaeological tradition than by language. Yumans and Pimans exhibit substantially greater genetic diversity than the Jemez and Zuni, probably due to admixture and genetic isolation, respectively. We find no evidence of a movement of mtDNA lineages northward into the Southwest from Central Mexico, which, in combination with evidence from nuclear markers, suggests that the spread of Uto-Aztecan was facilitated by predominantly male migration. Southern Athapaskans probably experienced a bottleneck followed by extensive admixture during the migration to their current homeland in the Southwest.     

Flyway structure in the circumpolar greater white‐fronted goose

Dispersal and migratory behavior are influential factors in determining how genetic diversity is distributed across the landscape. In migratory species, genetic structure can be promoted via several mechanisms including fidelity to distinct migratory routes. Particularly within North America, waterfowl management units have been delineated according to distinct longitudinal migratory flyways supported by banding data and other direct evidence. The greater white‐fronted goose (Anser albifrons) is a migratory waterfowl species with a largely circumpolar distribution consisting of up to six subspecies roughly corresponding to phenotypic variation. We examined the rangewide population genetic structure of greater white‐fronted geese using mtDNA control region sequence data and microsatellite loci from 23 locales across North America and Eurasia. We found significant differentiation in mtDNA between sampling locales with flyway delineation explaining a significant portion of the observed genetic variation (~12%). This is concordant with band recovery data which shows little interflyway or intercontinental movements. However, microsatellite loci revealed little genetic structure suggesting a panmictic population across most of the Arctic. As with many high‐latitude species, Beringia appears to have played a role in the diversification of this species. A common Beringian origin of North America and Asian populations and a recent divergence could at least partly explain the general lack of structure at nuclear markers. Further, our results do not provide strong support for the various taxonomic proposals for this species except for supporting the distinctness of two isolated breeding populations within Cook Inlet, Alaska (A. a. elgasi) and Greenland (A. a. flavirostris), consistent with their subspecies status.     

Mink farms predict Aleutian disease exposure in wild American mink

Background

Infectious diseases can often be of conservation importance for wildlife. Spillover, when infectious disease is transmitted from a reservoir population to sympatric wildlife, is a particular threat. American mink (Neovison vison) populations across Canada appear to be declining, but factors thus far explored have not fully explained this population trend. Recent research has shown, however, that domestic mink are escaping from mink farms and hybridizing with wild mink. Domestic mink may also be spreading Aleutian disease (AD), a highly pathogenic parvovirus prevalent in mink farms, to wild mink populations. AD could reduce fitness in wild mink by reducing both the productivity of adult females and survivorship of juveniles and adults.

Methods

To assess the seroprevalence and geographic distribution of AD infection in free-ranging mink in relation to the presence of mink farms, we conducted both a large-scale serological survey, across the province of Ontario, and a smaller-scale survey, at the interface between a mink farm and wild mink.

Conclusions/Significance

Antibodies to AD were detected in 29% of mink (60 of 208 mink sampled); however, seroprevalence was significantly higher in areas closer to mink farms than in areas farther from farms, at both large and small spatial scales. Our results indicate that mink farms act as sources of AD transmission to the wild. As such, it is likely that wild mink across North America may be experiencing increased exposure to AD, via disease transmission from mink farms, which may be affecting wild mink demographics across their range. In light of declining mink populations, high AD seroprevalence within some mink farms, and the large number of mink farms situated across North America, improved biosecurity measures on farms are warranted to prevent continued disease transmission at the interface between mink farms and wild mink populations.     

The structure of diversity within New World mitochondrial DNA haplogroups: implications for the prehistory of North America

The mitochondrial DNA haplogroups and hypervariable segment I (HVSI) sequences of 1,612 and 395 Native North Americans, respectively, were analyzed to identify major prehistoric population events in North America. Gene maps and spatial autocorrelation analyses suggest that populations with high frequencies of haplogroups A, B, and X experienced prehistoric population expansions in the North, Southwest, and Great Lakes region, respectively. Haplotype networks showing high levels of reticulation and high frequencies of nodal haplotypes support these results. The haplotype networks suggest the existence of additional founding lineages within haplogroups B and C; however, because of the hypervariability exhibited by the HVSI data set, similar haplotypes exhibited in Asia and America could be due to convergence rather than common ancestry. The hypervariability and reticulation preclude the use of estimates of genetic diversity within haplogroups to argue for the number of migrations to the Americas.     

Can intrinsic factors explain population declines in North American breeding shorebirds? A comparative analysis

Many shorebirds that breed in North America are declining. These trends reflect global patterns in shorebird populations. Here we ask what factors make some shorebird species more prone to decline than others. Specifically, we test the influence of migratory behaviour (route and distance), biogeography (population size and range), life history (body size, clutch size) and sexual selection (social mating system and testis size) on population trends in North American breeding shorebirds. Using phylogenetic comparative methods, we show that species that migrate across continental North America are more prone to decline than species that do not. Our finding that continental migrants are associated with population decline indicates that intrinsic factors may play an important role in predisposing a species to decline. Previous studies within the class Aves have failed to identify migration route as a correlate of decline or extinction risk. Two other intrinsic factors (oceanic migrants and threats on the non-breeding grounds) were also important in our overall models, although neither was significant alone. The moderate explanatory power of our variables indicates that other factors are also important for explaining shorebird declines. We suggest that contemporary threats, most notably habitat loss and degradation at migratory stopover sites, are likely to be important.     

A dendroclimatic analysis of mountain hemlock (Tsuga mertensiana) ring-width and maximum density parameters,southern British Columbia Coast Mountains,Canada

The growth of mountain hemlock trees in Pacific North America demonstrates a complex relationship to two or more seasonal environmental variables. In order to examine the radial growth response of mountain hemlock to subseasonal climate variables, ring-width and X-ray densitometric analyses were used to construct intra-annual dendroclimatic records. The intent was to highlight the difference between the dendroclimatic outcomes of standard ring-width analyses to those derived from density chronologies collected at high elevation locations in the British Columbia Coast Mountains. This study highlights the importance of using multiple tree-ring parameters to better define the complex growth behaviour in mountain hemlock trees for the construction of more robust proxy climate records. Tree-ring chronologies from three sites were used to describe the inherent climate-growth trends. Maximum tree-ring density values provided a robust data series for constructing site-specific proxy records of late-summer temperature. Annual ring-width measurements provided independent proxies of spring snowpack trends. Significant decreases in temperature and an increase in snowpack depth during the early 1700s and early 1800s coincides with documented PDO phases and Little Ice Age glacier advances. Identification of early and late growing season climate signals within mountain hemlock trees demonstrates the value of documenting the characteristics of multiple tree ring parameters in future dendroclimatic studies.     

Directly modelling population dynamics in the South American Arid Diagonal using 14C dates

Large anthropogenic ¹⁴C datasets are widely used to generate summed probability distributions (SPDs) as a proxy for past human population levels. However, SPDs are a poor proxy when datasets are small, bearing little relationship to true population dynamics. Instead, more robust inferences can be achieved by directly modelling the population and assessing the model likelihood given the data. We introduce the R package ADMUR which uses a continuous piecewise linear (CPL) model of population change, calculates the model likelihood given a ¹⁴C dataset, estimates credible intervals using Markov chain Monte Carlo, applies a goodness-of-fit test, and uses the Schwarz Criterion to compare CPL models. We demonstrate the efficacy of this method using toy data, showing that spurious dynamics are avoided when sample sizes are small, and true population dynamics are recovered as sample sizes increase. Finally, we use an improved ¹⁴C dataset for the South American Arid Diagonal to compare CPL modelling to current simulation methods, and identify three Holocene phases when population trajectory estimates changed from rapid initial growth of 4.15% per generation to a decline of 0.05% per generation between 10 821 and 7055 yr BP, then gently grew at 0.58% per generation until 2500 yr BP.This article is part of the theme issue ‘Cross-disciplinary approaches to prehistoric demography’.     

Emergence of adult female Sirex nigricornis F. and Sirex noctilio F. (Hymenoptera: Siricidae) coincides with a decrease in daily minimum and maximum temperature

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Populations do not become less genetically diverse or more differentiated towards the northern limit of the geographical range in clonal Vaccinium stamineum (Ericaceae)

Geographically peripheral populations are expected to exhibit lower genetic diversity and higher differentiation than central populations because of their smaller size and greater spatial isolation. In plants, a shift from sexual to clonal asexual reproduction may further reduce diversity and increase differentiation. Here, these predictions were tested by assaying 36 inter-simple sequence repeat (ISSR) polymorphisms in 21 populations of the woody, clonal plant Vaccinium stamineum in eastern North America, from the range center to its northern limit where it has 'threatened' status. Populations decline in frequency, but not size or sexual reproductive output, across the range. Within-population diversity did not decline towards range margins. Modest genetic differentiation among populations increased slightly towards range margins and in small populations with high clonal propagation and low seed production, although none of these trends was significant. Low seed production and high clonal propagation were not associated with large-scale clonal spread. By combining demographic and genetic data, this study determined that increased population isolation, rather than reduced population size, can account for the weak increase in genetic differentiation at range margins.     

Notes on the History and Adaptation of the Apache Tribes

Sometime between A.D. 1100 and 1600 a group of Athapaskan-speaking tribes migrated from northwestern North America into the southwestern United States, where most eventually came to be referred to as Apaches. Compared with the majority of Amerindian tribes, relatively little is known about this group, specially about their life prior to the arrival of Europeans in the seventeenth century. This paper is an attempt to gather together widely scattered information about their prehistoric movements, their economy, and their general style of adaptation to the Southwest.     

The MAD legacy: How meaningful is mean age-at-death in skeletal samples

This study examines the representativeness of palaeodemographic reconstructions from human skeletal remains. Mean age-at-death (MAD) is the primary statistic used in interpretations of changing patterns of health and well being from palaeodemographic analyses. A series of sampling experiments were conducted on three documented 19th century samples representing the total cemetery population from which skeletal samples could be drawn. Comparisons of the age-at-death distributions of simulated skeletal samples to the parent population were made to assess the relative magnitude of deviation associated with different types of bias (age, sex, temporal). From the examples presented, variability in age-at-death distribution is high in samples of less than 100, suggesting that for samples of less than 100analyzable individuals, it is probable that the mortality profiles constructed are not an accurate reflection of the cemetery. It is proposed that whateverprocess mean age-at-death reflects for past populations (fertility or mortality), is irrelevant if the sample on which the statistic is calculated is not representative of the population. Given that most cemetery samples will be subject, differentially, to biases at a variety of levels, comparative studies based on palaeodemographic data cannot be considered reliablewithout careful control for those biases. It is suggested that representativeness is the primary theoretical obstacle for researches to overcome, and that it is necessary to shift our focus to rigorously exploring those factors that bias our samples. Without some direct quantification of the representativeness of a sample, palaeodemographic estimators such as mean age-at-death are meaningless and any subsequent interpretations regarding the past, dubious at best.     

Population structure and genetic diversity in Swainson’s Hawks (Buteo swainsoni): implications for conservation

Swainson’s Hawks (Buteo swainsoni) are large raptors with a breeding distribution extending across much of western North America where they were historically considered one of the most abundant raptors. Swainson’s Hawks have declined precipitously in many parts of their range during the 20th century, and the historical range in California has been much reduced. In the Central Valley of California (CV), Swainson’s Hawks exhibit behavioral and morphological characteristics apparently different from other regions. To describe the genetic diversity and population structure of Swainson’s Hawks throughout their range, 19 microsatellite loci and 416 base pairs of the mitochondrial control region were analyzed. Microsatellite diversity appears high throughout the contemporary range. A Bayesian model-based analysis of microsatellite genotypes revealed clusters associated with the CV and the Great Basin/Great Plains region of North America (GBGP) with overlap between regions. F _ST estimates suggest limited differentiation among Swainson’s Hawks with isolation by distance. A heterozygote excess indicated a recent reduction in effective population size of Swainson’s Hawks across all regions. Control region data revealed no population structure and provided evidence of historic population expansion in the GBGP. In the CV a weaker signature of population expansion was detected, possibly altered by recent declines. While genetic data suggests recent gene-flow across regions, apparent differences between the CV and GBGP in traits with potential fitness consequences (migratory behavior and morphology) along with marked decline in numbers in California call for careful conservation, management, and monitoring of Swainson’s Hawks in the CV.     

Approaching prehistoric demography: proxies,scales and scope of the Cologne Protocol in European contexts

In many theories on the social and cultural evolution of human societies, the number and density of people living together in a given time and region is a crucial factor. Because direct data on past demographic developments are lacking, and reliability and validity of demographic proxies require careful evaluation, the topic has been approached from several different directions. This paper provides an introduction to a geostatistical approach for estimating prehistoric population size and density, the so-called Cologne Protocol and discusses underlying theoretical assumptions and upscaling transfer-functions between different spatial scale levels. We describe and compare the specifics for farming and for foraging societies and, using examples, discuss a diachronic series of estimates, covering the population dynamics of roughly 40 kyr of European prehistory. Ethnohistoric accounts, results from other approaches—including absolute (ethno-environmental models) and relative estimates (site-numbers, dates as data, etc.) allow a first positioning of the estimates within this field of research. Future enhancements, applications and testing of the Cologne Protocol are outlined and positioned within the general theoretical and methodological avenues of palaeodemographic research. In addition, we provide manuals for modelling Core Areas in MapInfo, ArcGIS, QGIS/Saga and R.This article is part of the theme issue ‘Cross-disciplinary approaches to prehistoric demography’.     

Compositional vegetation changes and increased red spruce abundance during the Little Ice Age in a sugar maple forest of north-eastern North America

In north-eastern North America, the recent red spruce decline has been linked to atmospheric pollution, notably acid rain, although climate was also advocated as a potential factor. A high resolution lake sediment pollen stratigraphy was obtained to elucidate long-term trends in tree-species abundance in a sugar maple??yellow birch forest. The reconstructed history (~250?C1996?A.D.) showed a steady increase of red spruce after 1300?A.D., with a peak between 1600 and 1900?A.D. followed by a strong decline in the last century, while sugar maple and yellow birch experienced an opposite trend. Red spruce abundance reached its apogee during the cool Little Ice Age (LIA) and decreased abruptly when annual temperature in the region increased by 2?°C in the last 125?years. American Beech was much more abundant in the forest before the LIA, typifying a sugar maple??American beech forest as the dominant forest type during the Late Holocene. Our results suggest that climate warming has played an important role in the current red spruce decline, the latter having been initiated well before acidic depositions reached deleterious potential effects on red spruce. Climate warming probably acted as a long-term predisposing factor that was aggravated by atmospheric pollution, in the last decades.     

Climate and ecosystem linkages explain widespread declines in North American Atlantic salmon populations

North American Atlantic salmon (Salmo salar) populations experienced substantial declines in the early 1990s, and many populations have persisted at low abundances in recent years. Abundance and productivity declined in a coherent manner across major regions of North America, and this coherence points toward a potential shift in marine survivorship, rather than local, river‐specific factors. The major declines in Atlantic salmon populations occurred against a backdrop of physical and biological shifts in Northwest Atlantic ecosystems. Analyses of changes in climate, physical, and lower trophic level biological factors provide substantial evidence that climate conditions directly and indirectly influence the abundance and productivity of North American Atlantic salmon populations. A major decline in salmon abundance after 1990 was preceded by a series of changes across multiple levels of the ecosystem, and a subsequent population change in 1997, primarily related to salmon productivity, followed an unusually low NAO event. Pairwise correlations further demonstrate that climate and physical conditions are associated with changes in plankton communities and prey availability, which are ultimately linked to Atlantic salmon populations. Results suggest that poor trophic conditions, likely due to climate‐driven environmental factors, and warmer ocean temperatures throughout their marine habitat area are constraining the productivity and recovery of North American Atlantic salmon populations.