生物学基础实验教学改革的实践与构想

为了适应面向21世纪培养高素质人才的需要,对生物学基础实验教学进行了初步的整改。在此基础上提出了开设综合性实验的新构想,综合性实验包括实验内容和实验形式的综合。     

Modeling Virus Adsorption in Batch and Column Experiments

Experiments with batch suspensions, recirculating columns and flow-through columns have been carried out involving a sandy soil and five bacteriophages: MS2, PRD1, X174, Q and PM2. In batch and recirculating column experiments, attachment and detachment rate coefficients were determined by fitting a two-parameter (attachment and detachment) model. In general, attachment and detachment rate coefficients were not found to be significantly different between the two kinds of experiments. There was one exception, however: MS2 appeared to detach faster in the presence of strong advective flow. In the case of flow-through column experiments, it is shown that a two-site model, with adsorption to equilibrium and kinetic sites, fits the breakthrough curves of all the phages, except PM2, satisfactorily. A one-site kinetic model was found to be appropriate for phage PM2. A small proportion of bacteriophages MS2, PRD1, and Q adsorbed to equilibrium sites, whereas a large proportion of X174 adsorbed to equilibrium sites. Such a distinction between adsorption to equilibrium and kinetic sites cannot be made in the case of batch or recirculating column experiments. Kinetic attachment rate coefficients were found to be significantly higher for the bacteriophages with presumably stronger negative charge. This may be ascribed to the presence of multivalent cations. Under these conditions, bacteriophage X174 appears to behave more conservatively than more negatively charged viruses, and may then be a better choice as a relatively conservative tracer for virus transport through the subsurface.     

Method in macroecology

Macroecology is concerned with understanding the abundance and distribution of species at large spatial and temporal scales. Understanding pattern and process in macroecology thus presents a considerable methodological challenge, as the scales of interest are simply too large for the traditional ecological approach of experimental manipulation to be possible or ethical. Here, I summarise the methods that have been most commonly employed to explore macroecological questions, discuss important methodological issues that need to be considered when interpreting macroecological data, and suggest likely future developments in macroecological methodology.

Zusammenfassung

Die Makroökologie befasst sich mit dem Verständnis der Abundanz und der Verbreitung der Arten in großen räumlichen und zeitlichen Maßstäben. Das Verständnis von Mustern und Prozessen in der Makroökologie stellt deshalb eine beträchtliche methodische Herausforderung dar, weil die Skalen von Interesse für die traditionelle ökologische Vorgehensweise der experimentellen Manipulation einfach zu groß sind, als dass sie möglich oder ethisch vertretbar wäre. Hier fasse ich die Methoden zusammen, die am häufigsten zum Einsatz kommen, um makroökologische Fragen zu erforschen, diskutiere wichtige methodische Punkte, die beachtet werden müssen, wenn makroökologische Daten interpretiert werden, und deute auf wahrscheinliche zukünftige Entwicklungen in der makroökologischen Methodik hin.     

本科生“分子生物学实验”课程设计的改革与探索

"分子生物学实验"是分子生物学理论课配套的实验课。掌握分子生物学基本实验技术是生命科学对新时代人才发展的基本需求。上海科技大学通过整合教学资源与实验室资源,对传统本科生"分子生物学实验"的教学内容和体系进行调整,建立了一套基础实验与前沿实验相结合、验证性实验和自主设计性实验相结合的教学体系,为提高本科生"分子生物学实验"课程教学质量和培养综合型人才奠定了基础。     

Nemertea inhabiting the Haploops (Amphipoda) community of the northern Øresund with special reference to the biology of Nipponnemertes pulcher (Hoplonemertea)

The densities of nemerteans and associated fauna on a soft-bottom sampling station (27–30 m deep) in the Øresund were determined from 47 cores (each 135 cm² in cross-section; 20 + cm deep) collected from September to December 1989; these data were compared with 14 cores taken from the same location in December 1982. Nine species of nemerteans were identified from cores and dredge samples: Palaeonemertea — Callinera-like sp.; Heteronemertea — Cerebratulus fuscus, C. marginatus, Lineus bilineatus, Micrura fasciolata, M. purpurea; Hoplonemertea — Amphiporus bioculatus, A. dissimulans, Nipponnemertes pulcher. Mean numbers of heteronemerteans were 32 and 10 m^?2 in 1982 and 1989, respectively, and hoplonemerteans were 90 and 71 m^?2 , respectively. Only one palaeonemertean was collected during both years. Mean densities of the dominant species, N. pulcher, were similar for the two years, 74 and 68 m^?2. The dominant groups of macrofauna (n m^?2) in 1989 were ostracods (1028), amphipods (618), polychaetes (514), and ophiuroids (449). Amphipods (>90% Haploops spp.) and polychaetes (at least 30 spp.) are the major potential prey for hoplonemerteans and heteronemerteans, respectively. Laboratory feeding experiments with N. pulcher revealed that it consumed amphipods (Haploops tenuis and H. tubicola) at a rate of 2.6 worm^?1 d^?1 during the first 12 hours, but after 36 hours and beyond the rate was maintained at approximately 0.2 worm^?1 d^?1. Beyond 12 hours this nemertean showed a tendancy to only partially evacuate its prey. It was demonstrated experimentally that N. pulcher has a supply of toxin capable of killing six amphipods in approximately one hour. Limited tests showed that N. pulcher fed on the cumacean Diastylis tumida, but not on the amphipod Maera loveni or the ostracod Philomedes globosus, and that Amphiporus dissimulans readily attacked Haploops spp., but not Maera or Philomedes. Although the results of laboratory experiments are tentative, they do suggest that suctorial hoplonemerteans can exert a potentially significant effect on benthic communities. Employing seven species of polychaetes as prey for Cerebratulus fuscus and Micrura fasciolata, only the latter responded positively to one of them, Glycera alba. The hermit crab Pagurus bernhardus violently rejected N. pulcher in all feeding trials.     

Factorial and time course designs for cDNA microarray experiments

Microarrays are powerful tools for surveying the expression levels of many thousands of genes simultaneously. They belong to the new genomics technologies which have important applications in the biological, agricultural and pharmaceutical sciences. There are myriad sources of uncertainty in microarray experiments, and rigorous experimental design is essential for fully realizing the potential of these valuable resources. Two questions frequently asked by biologists on the brink of conducting cDNA or two-colour, spotted microarray experiments are 'Which mRNA samples should be competitively hybridized together on the same slide?' and 'How many times should each slide be replicated?' Early experience has shown that whilst the field of classical experimental design has much to offer this emerging multi-disciplinary area, new approaches which accommodate features specific to the microarray context are needed. In this paper, we propose optimal designs for factorial and time course experiments, which are special designs arising quite frequently in microarray experimentation. Our criterion for optimality is statistical efficiency based on a new notion of admissible designs; our approach enables efficient designs to be selected subject to the information available on the effects of most interest to biologists, the number of arrays available for the experiment, and other resource or practical constraints, including limitations on the amount of mRNA probe. We show that our designs are superior to both the popular reference designs, which are highly inefficient, and to designs incorporating all possible direct pairwise comparisons. Moreover, our proposed designs represent a substantial practical improvement over classical experimental designs which work in terms of standard interactions and main effects. The latter do not provide a basis for meaningful inference on the effects of most interest to biologists, nor make the most efficient use of valuable and limited resources.     

Review. The multiple roles of cultural transmission experiments in understanding human cultural evolution

In this paper, we explore how experimental studies of cultural transmission in adult humans can address general questions regarding the 'who, what, when and how' of human cultural transmission, and consequently inform a theory of human cultural evolution. Three methods are discussed. The transmission chain method, in which information is passed along linear chains of participants, has been used to identify content biases in cultural transmission. These concern the kind of information that is transmitted. Several such candidate content biases have now emerged from the experimental literature. The replacement method, in which participants in groups are gradually replaced or moved across groups, has been used to study phenomena such as cumulative cultural evolution, cultural group selection and cultural innovation. The closed-group method, in which participants learn in groups with no replacement, has been used to explore issues such as who people choose to learn from and when they learn culturally as opposed to individually. A number of the studies reviewed here have received relatively little attention within their own disciplines, but we suggest that these, and future experimental studies of cultural transmission that build on them, can play an important role in a broader science of cultural evolution.     

Reproducibility of short-term and reproduction toxicity experiments with Daphnia magna and comparison of the sensitivity of Daphnia magna with Daphnia pulex and Daphnia cucullata in short-term experiments

Short-term toxicity tests with Daphnia magna are reasonably reproducible. The sensitivity of Daphnia pulex, Daphnia cucullata and Daphnia magna proved to be about the same in short-term tests with 15 different chemical compounds.Reproduction toxicity experiments with Daphnia magna can easily be carried out within three weeks. At least duplicate experiments are necessary to arrive at an approximate no-effect level.     

我校屏障系统动物实验设施的综合管理

随着医学实验动物学科的发展及实验动物生产、使用许可证管理办法的实施,本文介绍了我校屏障系统动物实验设施的运营管理模式,包括建立完整的文件及系统内标准操作的管理体系、人员队伍的建设和管理、实验动物环境设施的管理、系统内环境物品的管理等,总结相关经验以供同行参考。     

Phenology and common garden and reciprocal transplant studies of Polymnia canadensis (Asteraceae), a monocarpic species of the North American Temperate Deciduous Forest

Polymnia canadensis, an herbaceous plant species ofthe North American Temperate Deciduous Forest heretofore reported as beingperennial, is shown to be primarily monocarpic. In common garden experiments,the majority of plants grown from seeds or seedlings collected in Kentucky,Alabama, Virginia, Ohio, and Missouri were monocarpic, but some were dicarpic,tricarpic or polycarpic. Observations in natural populations of P.canadensis suggested that there is variation in the life history ofthis species throughout its geographic range. Anthesis date and height ofplantsat anthesis were significantly different between mesic and dry field sites incentral Kentucky populations, but common garden and reciprocal transplantexperiments showed that these were due mainly to environmental (and not togenetic) effects. The latter was also true for age of maturity and rate ofchange in plant height. Lack of significant site × source interaction forthese characters indicated that plants did not differ in their plasticresponsesbetween sources at each site. Winter annual, biennial, triennial, and dicarpicand tricarpic perennial life histories occurred within populations in bothcommon garden and reciprocal transplant experiments. In the latter experiments,most matured plants were either biennials (most common) or winter annuals(second most common), with the order reversed in the former experiments due toamore benign environment favoring earlier maturity. The extensive phenotypicplasticity displayed by P. canadensis for phenology andlife history enables the species to inhabit a wide range of environments.     

谈谈“自助式”微生物学实验教学模式

为推进教学方法、教学手段的改革,改善传统的实验教学方式的不足,真正实现创造型、创新型、创业型“三创”人才培养,在建构主义教育理论指导下,结合“开放式”实验教学模式的实践经验,提出了一种新颖的实验教学模式———自助式微生物学实验教学模式,并就如何组织实施、如何利用计算机技术设计和使用虚拟仪器与实时监测系统、提高教学效率,谈了一些看法。     

Protein evolution: intrinsic preferences in peptide bond formation: a computational and experimental analysis

Two possibilities exist for the evolution of individual enzymes/proteins from a milieu of amino acids, one based on preference and selectivity and the other on the basis of random events. Logic is overwhelmingly in favour of the former. By protein data base analysis and experiments, we have provided data to show the manifestation of two types of preferences, namely, the choice of the neighbour and its acceptance from the amino end (left) or the carboxyl end (right). The study tends to show that if the 20 proteinous amino acids were made to combine in water, the resulting profile would be nonrandom. Such selectivity could be a factor in protein evolution. Dedicated to the memory of Darshan Ranganathan.     

茶黑刺粉虱的生物学特性及防治

茶黑刺粉虱Aleurocanthus spiniferus Quaintance是茶树的主要害虫之一。该虫在山东省薛城1年发生4代,以幼虫在叶片中越冬。对成虫、初孵幼虫和越冬幼虫的田间化学防治试验,结果显示,分别选用1.8%阿维菌素2500倍液或2.5%吡虫啉2000倍液防治成虫或幼虫效果较好。     

信息时代生态学本科专业微生物学实验课教学浅析

结合现代生态学本科专业的特点和学科发展需求,对微生物学实验课教学内容设置、实验课教学方法与效果以及课程考核办法进行了思考和探讨。科学地设置实验内容,优化利用学校多媒体网络技术,积极有效地安排实验课时间,充分调动学生的实验课兴趣,使学生更好地学习和掌握微生物学实验技能,为新世纪生态科学的发展培养优秀人才。     

PBL (Problem-based learning)教学模式在微生物 制药设计性实验教学中的应用

微生物制药设计性实验是提高学生专业技能和培养创新能力的一种重要途径.为提高教学质量,我们在设计性实验教学中开展了基于问题的学习(PBL)教学模式.PBL教学模式的引入显著地提高了学生的学习积极性,锻炼了学生分析和解决问题的能力,增强了沟通和交流能力.本文报道PBL教学模式在微生物制药设计性实验中的实施情况,并对实施过程中出现的一些问题进行分析和探讨.     

四种马先蒿属植物的菌根形态学研究

通过4种马先蒿属植物,三色马先蒿三色变种(PedicularistricolorHand.-Mazz.var.tricolor),管花马先蒿管花变种(P.siphonanthaDonvar.siphonantha),全缘叶马先蒿全缘亚种(P.integrifoliaHk.f.subsp.integerrimaTsoong)和二歧马先蒿(P.ditrotomaBonati)根的解剖,在这四种马先蒿属植物根内均发现有真菌菌丝侵入,真菌菌丝向外伸入土壤,向内侵入皮层细胞内形成囊泡.从根表面分离到的真菌厚垣孢子,经鉴定均为漏斗球囊霉(GlomusmosseaeNicol.&Gerd.).其中,三色马先蒿和二歧马先蒿栽培实验表明,真菌起到了改善寄主植物营养状况的作用.     

Effect of simulated and real weightlessness on early regeneration stages of Brassica napus protoplasts

Summary Results from experiments using protoplasts in space, performed on the Biokosmos 9 satellite in 1989 and on the Space Shuttle on the IML-1-mission in 1992 and S/MM-03 in 1996, are presented. This paper focuses on the observation that the regeneration capacity of protoplasts is lower under micro-g conditions than under 1 g conditions. These aspects have been difficult to interpret and raise new questions about the mechanisms behind the observed effects. In an effort to try to find a key element to the poor regeneration capacity, ground-based studies were initiated focusing on the effect of the variable organization and quantity of corticular microtubules (CMTs) as a consequence of short periods of real and simulated weightlessness. The new results demonstrated the capacity of protoplasts to enter division, confirming the findings in space that this was affected by gravity. The percentage of dividing cells significantly decreased as a result of exposure to simulated weightlessness on a 2-D clinostat. Similar observations were made when comparing the wall components, which confirmed that the reconstitution of the cell wall was retarded under both space conditions and simulated weightlessness. The peroxidase activity in protoplasts exposed to microgravity was slightly decreased in both 0 g and 1 g flight samples compared with the ground controls, whereas activity in the protoplasts exposed to simulated weightlessness was similar to activity in the 1 g control. The observation that protoplasts had randomized and more sparse corticular microtubules when exposed to various forms of simulated and real weightlessness on a free-fall machine on the ground could indicate that the low division capacity in 0 g protoplasts was correlated with an abnormal CMT array in these protoplasts. This study has increased our knowledge of the more basic biochemical and cell biological aspects of g effects. This is an important link in preparation for the new space era, when it will be possible to follow the growth of single cells and tissue cultures for generations under microgravity conditions on the new International Space Station, which will be functional on a permanent basis from the year 2003.     

一种新型花烛切花保鲜剂的效果

通过近两年的研究,我室研制出无毒、无腐蚀、无色、无污染的新型环保型高效花烛切花保鲜剂。经试验,该保鲜剂在较高和较低温度条件下保鲜效果稳定,与空白对照及含银保鲜剂相比,具有保鲜期长、切花质量好的效果。