The role of shoot-localized processes in the mechanism of Zn efficiency in common bean

Zn efficiency (ZE) is the ability of plants to maintain high yield under Zn-deficiency stress in the soil. Two bean (Phaseolus vulgaris L.) genotypes that differed in ZE, Voyager (Zn-efficient) and Avanti (Zn-inefficient), were used for this investigation. Plants were grown under controlled-environment conditions in chelate-buffered nutrient solution where Zn²⁺ activities were controlled at low (0.1 pM) or sufficient (150 pM) levels. To investigate the relative contribution of the root versus the shoot to ZE, observations of Zn-deficiency symptoms in reciprocal grafts of the two genotypes were made. After growth under low-Zn conditions, plants of nongrafted Avanti, self-grafted Avanti and reciprocal grafts that had the Avanti shoot scion exhibited Zn-deficiency symptoms. However nongrafted and self-grafted Voyager, as well as reciprocal grafts with the Voyager shoot scion, were healthy with no visible Zn-deficiency symptoms under the same growth conditions. More detailed investigations into putative shoot-localized ZE mechanisms involved determinations of leaf biomass production and Zn accumulation, measurements of subcellular Zn compartmentation, activities of two Zn-requiring enzymes, carbonic anhydrase and Cu/Zn-dependent superoxide dismutase (Co/ZnSOD), as well as the non-Zn-requiring enzyme nitrate reductase. There were no differences in shoot tissue Zn concentrations between the Zn-inefficient and Zn-efficient genotypes grown under the low-Zn conditions where differences in ZE were exhibited. Shoot Zn compartmentation was investigated using radiotracer (⁶⁵Zn) efflux analysis and suggested that the Zn-efficient genotype maintains higher cytoplasmic Zn concentrations and less Zn in the leaf-cell vacuole, compared to leaves from the Zn-inefficient genotype under Zn deficiency. Analysis of Zn-requiring enzymes in bean leaves revealed that the Zn-efficient genotype maintains significantly higher levels of carbonic anhydrase and Cu/ZnSOD activity under Zn deficiency. While these data are not sufficient to allow us to determine the specific mechanisms underlying ZE, they certainly point to the shoot as a key site where ZE mechanisms are functioning, and could involve processes associated with Zn compartmentation and biochemical Zn utilization.Abbreviations CA Carbonic anhydrase - NR Nitrate reductase - SOD Superoxide dismutase - ZE Zinc efficiency This research was supported by a graduate fellowship awarded to G.H. by The Republic of Turkey     

Identification of multiple symptoms of huanglongbing by electronic nose based on the variability of volatile organic compounds

Huanglongbing (HLB) is highly contagious and cannot be cured, resulting in a decrease in the commercial value of citrus. Timely detection and removal of diseased trees is an effective way to reduce losses. Complex symptoms of HLB, such as nutrient deficiencies often accompany HLB; as a result effective and accurate identification of HLB remains a challenge. In this study, 175 volatile organic compounds (VOCs) were detected in three categories (healthy, HLB, and Zn-deficiency) of samples using headspace solid-phase microextraction gas chromatography–mass spectrometry (HS-SPME-GC/MS), highlighting the variability of VOCs present in different categories of samples. In order to simplify the testing steps and reduce the cost in practical agricultural production, a method based on electronic nose technology to collect VOCs from citrus leaves for HLB detection was proposed. Among them, limiting value features and linear discriminant analysis were identified as the best combination of feature extraction and pattern recognition methods. Multiple sets of comparison experiments were set up and the collection conditions of VOCs were optimized. The results showed that the best classification performance was achieved for a 0.2 g sample at a collection time of 20 min when the collection temperature was 40°C and the headspace volume was 200 mL. Four types of samples (healthy, HLB-positive, Zn-deficiency, Zn-deficiency and HLB-positive) were used for model reliability validation, with an accuracy of 97.79% for HLB samples for multiple symptoms (including HLB-positive and Zn-deficiency and HLB-positive) identification. In addition, the accuracy of samples with a combined effect of Zn-deficiency and HLB was 96.43%. The results show that the E-nose-based HLB detection method is conducive to suppressing the spread of HLB, which can ensure the quality of citrus products and reduce the economic loss to horticulturists, and has good practical value.     

Evaluation of sole nitrogen sources for shoot and leaf disc cultures of sugarbeet

Use of single nitrogen sources in nutrient media is essential to ascertaining the relative role and regulation of nitrogen assimilatory steps, and may help identify and understand highly productive media for micropropagation and adventitious shoot formation. Eight endogenous nitrogen-containing ions or compounds in sugarbeet (nitrate, ammonium, glutamine, glutamate, urea, proline, glycine betaine and choline) were examined for ability to serve as sole nitrogen source for shoot or leaf disc culture of sugarbeet (Beta vulgaris L.) model clone REL-1. The most productive concentrations of nitrate, ammonium, urea, and glutamine as sole nitrogen sources were moderately supportive of shoot multiplication (64, 70, 81 and 71%, respectively) and fresh weight increase (65, 41, 54 and 41%, respectively) compared to shoot culture growth with the Murashige-Skoog nitrogen mix of 40 mM nitrate and 20 mM ammonium. Glutamate and proline were at best poorly supportive, and glycine betaine and choline were non-supportive. Callus initiation from leaf discs was supported only by nitrate, ammonium, urea, glutamine and proline (50, 100, 100, 100 and 80%, respectively, at the best concentrations, of that on Murashige-Skoog medium). Subsequent shoot regeneration from the intact disc callus in those cultures only occurred on media with nitrate, urea, glutamine, or proline (12, 3, 28 and 3% as many shoots, respectively, as on Murashige-Skoog medium). Overall, the Murashige-Skoog nitrogen mix was superior or equal to any single nitrogen source. However, single nitrogen source media with nitrate, ammonium, urea, glutamine or proline should have significant utility for shoot or leaf disc cultures of mutants with impaired nitrogen assimilation, in comparative physiology studies, or in dual cultures with pathogens of limited ability to use any of these forms of nitrogen. This revised version was published online in June 2006 with corrections to the Cover Date.     

Rapid and slow modulation of nitrate reductase activity in the red macroalga <Emphasis Type="Italic">Gracilaria chilensis</Emphasis> (Gracilariales,Rhodophyta): influence of different nitrogen sources

Nitrate is one of the most important stimuli in nitrate reductase (NR) induction, while ammonium is usually an inhibitor. We evaluated the influence of nitrate, ammonium or urea as nitrogen sources on NR activity of the agarophyte Gracilaria chilensis. The addition of nitrate rapidly (2 min) induced NR activity, suggesting a fast post-translational regulation. In contrast, nitrate addition to starved algae stimulated rapid nitrate uptake without a concomitant induction of NR activity. These results show that in the absence of nitrate, NR activity is negatively affected, while the nitrate uptake system is active and ready to operate as soon as nitrate is available in the external medium, indicating that nitrate uptake and assimilation are differentially regulated. The addition of ammonium or urea as nitrogen sources stimulated NR activity after 24 h, different from that observed for other algae. However, a decrease in NR activity was observed after the third day under ammonium or urea. During the dark phase, G. chilensis NR activity was low when compared to the light phase. A light pulse of 15 min during the dark phase induced NR activity 1.5-fold suggesting also fast post-translational regulation. Nitrate reductase regulation by phosphorylation and dephosphorylation, and by protein synthesis and degradation, were evaluated using inhibitors. The results obtained for G. chilensis show a post-translational regulation as a rapid response mechanism by phosphorylation and dephosphorylation, and a slower mechanism by regulation of RNA synthesis coupled to de novo NR protein synthesis.     

Different nitrogen sources and growth responses of Spirulina platensis in microenvironments

Spirulina platensis was cultivated, in comparative studies, using several sources of nitrogen. The standard source used (sodium nitrate) was the same as that used in the synthetic medium Zarrouk, whereas the alternative nitrogen sources consisted of ammonium nitrate, urea, ammonium chloride, ammonium sulphate or acid ammonium phosphate. The initial nitrogen concentrations tested were 0.01, 0.03 and 0.05 M in an aerated photobioreactor at 30 °C, with an illuminance of 1900 lux, and 12 h-light/12 h-dark photoperiod over a period of 672 h. Maximum biomass was produced in medium containing sodium nitrate (0.01–0.03–0.05 M), followed by ammonium nitrate (0.01 M) and urea (0.01 M). The final biomass concentrations were 1.992 g l^–1 (0.03 M sodium nitrate), 1.628 g l^–1 (0.05 M sodium nitrate), 1.559 g l^–1 (0.01 M sodium nitrate), 0.993 g l^–1 (0.01 M ammonium nitrate) and 0.910 g l^–1 (0.01 M urea). This suggested that it is possible to utilize nitrogen sources other than sodium nitrate for growing S. platensis, in order to decrease the production costs of scaled up projects.     

Evidence for carrier-mediated,energy-dependent uptake of urea in some bacteria

Evidence for the existence of an energy-dependent urea permease was found for Alcaligenes eutrophus H16 and Klebsiella pneumoniae M5a1 by studying uptake of ¹⁴C-urea. Since intracellular urea was metabolized immediately, uptake did not result in formation of an urea pool. Evidence is based on observations that the in vivo urea uptake and in vitro urease activity differ significantly with respect to kinetic parameters, temperature optimum, pH optimum, response towards inhibitors and regulation. The K _m for urea uptake was 15–20 times lower (38 M and 13 M urea for A. eutrophus and K. pneumoniae, respectively) than the K _m of urease for urea (650 M and 280 M urea), the activity optimum for A. eutrophus was at pH 6.0 and 35°C for the uptake and pH 9.0 and 65°C for urease. Uptake but not urease activity in both organisms strongly decreased upon addition of inhibitors of energy metabolism, while in K. pneumoniae, potent inhibitors of urease (thiourea and hydroxyurea) did not affect the uptake process. Significant differences in the uptake rates were observed during growth with different nitrogen sources (ammonia, nitrate, urea) or in the absence of a nitrogen source; this suggested that a carrier is involved which is subject to nitrogen control. Some evidence for the presence of an energy-dependent uptake of urea was also obtained in Pseudomonas aeruginosa DSM 50071 and Providencia rettgeri DSM 1131, but not in Proteus vulgaris DSM 30118 and Bacillus pasteurii DSM 33.Non-standard abbreviations CCCP Carbonylcyanide-m-chlorphenylhydrazone - DCCD dicyclohexylcarbodiimide - DNP 2,4-dinitrophenole     

Microbial decomposition of urea in the Menai Straits

The assimilation of urea by the microbial population of the Menai Strait (Anglesey, U.K.) was studied over a seasonal cycle. Samples incubated in the light produced higher assimilation rates than samples incubated in darkness. Higher ratios assimilation of urea: chlorophyll a during a time of a probable nitrogen limiting condition may be indicative of the importance of urea for phytoplankton nutrition. Assimilation rates of urea were higher during the diatom and Phaeocystis bloom than in times of low standing crop.Phytoplankton seem to be the major utilizers of urea in the Menai Strait waters. Bacteria may also be important in the decomposition of urea. However, with the methods employed it was not possible to estimate the extent of their participation in the urea decomposition.     

Urease formation in purple sulfur bacteria (Chromatiaceae) grown on various nitrogen sources

Batch cultures of Thiocapsa roseopersicina strain 6311, Thiocystis violacea strain 2311 and Chromatium vinosum strain 1611, grown anaerobically in the light on sulfide with urea, ammonia, N₂ or casein hydrolysate as nitrogen source exhibited urease activity, while Chromatium vinosum strain D neither showed any degradation of urea nor urease activity on any of the nitrogen sources tested.In T. violacea and C. vinosum strain 1611 urease was little affected by the nitrogen source and seemed to be constitutive. In T. roseopersicina, however, the enzyme was repressed by ammonia (although a low basal level of activity remained) and, to a lesser degree, induced by urea: The presense of urea stimulated a temporary increase in urease activity in the early exponential growth phase. The highest activities, however, were found after growth on N₂, and especially on 0.1% casein hydrolysate (in the absence or after exhaustion of external ammonia), but not before the stationary growth phase was reached. Derepressed urease synthesis required an efficient external source of nitrogen.In cultures of T. roseopersicina urease activity showed a periodic oscillation which depended on the repeated feeding with sulfide and subsequent variation in the sulfur content of the cells. The possible reasons of this oscillation are discussed.     

Urea fertilization effects on nutrient uptake and growth of Platanus occidentalis during plantation establishment

Summary The benefit of fertilizer application during establishment of a tree plantation depends on effective nutrient uptake and the utilization of the nutrients in growth. Five urea treatments (0, 50, 75, 150, and 450 kg N/ha) were applied in a completely randomized plot design to a field planted with American sycamore (Platanus occidentalis L.) seedlings to evaluate growth responses and nitrogen use efficiency during the first season of plantation establishment. The site was in the Oak Ridge Reservation in eastern Tennessee on a highly weathered soil. Harvests were conducted on 3 occasions during a 22 week experimental period, and dry weights of stems, leaves, and large and small roots were measured. Chemical analyses were conducted on plant tissues from the 0, 75, and 450 kg N/ha treatments. Plant dry weight increased with urea application and growth analysis showed that this was mainly associated with increase in leaf area and to a minor extent with increase in net assimilation rate. Root weight increased significantly with urea application. The specific absorption rate of roots for several nutrients was greater at higher urea levels for the first 2 harvest periods, but this pattern reversed during the 3rd growth period. Surprisingly, manganese uptake and the specific absorption rate for manganese were enhanced with higher urea application. The acidifying effect of urea nitrification is a likely explanation for the increased Mn availability, and nitrate leaching and/or nitrogen immobilization contributed to low uptake of urea-N by the seedlings. The proportion of the applied nitrogen incorporated into the seedlings was 1.5 and 0.6% for the 75 and 450 kg N/ha urea treatments, respectively. Broadcast fertilizer application is not an effective way of supplying nutrients to seedlings during plantation establishment.     

Ammonium and urea removal by Spirulina platensis

Different concentrations either of ammonium chloride or urea were used in batch and fed-batch cultivations of Spirulina platensis to evaluate the possibility of substituting nitrate by cheaper reduced nitrogen sources in wastewaters biotreatment. The maximum nitrogen concentration able to sustain the batch growth of this microalga without inhibition was 1.7 mM in both cases. Ammonium chloride was limiting for the growth at lower concentrations, whereas inhibition took place at higher levels. This inhibition effect was less marked with urea, likely because the enzymatic hydrolysis of this compound by urease controlled the ammonia transfer into the cell. Fed-batch experiments carried out by pulse-feeding either ammonium or urea proved that the use of these compounds as nitrogen sources can sustain the long term-cultivation of S. platensis, provided that the conditions for their feeding are accurately optimized.     

鲁氏接合酵母对酱油中氨基甲酸乙酯前体物的代谢

【目的】研究鲁氏接合酵母氮源代谢特性,确定鲁氏接合酵母氮源代谢与酱油中氨基甲酸乙酯前体物瓜氨酸和尿素积累的关系。【方法】通过单一氮源培养、偏好型氮源培养和盐胁迫培养,检测不同条件下鲁氏接合酵母对精氨酸、瓜氨酸和尿素的代谢能力。【结果】通过对鲁氏接合酵母氨基酸利用能力的分析,确定了甘氨酸、丙氨酸和天冬酰胺3种氨基酸为鲁氏接合酵母的偏好型氮源。在偏好型氮源存在时,鲁氏接合酵母对尿素和瓜氨酸的利用并不受到抑制,丙氨酸和甘氨酸还能够促进对二者的利用。鲁氏接合酵母在单一氮源培养条件下不会降解精氨酸而积累尿素和瓜氨酸,反而可以大量利用氨基甲酸乙酯的前体物尿素和瓜氨酸。但在盐胁迫下,鲁氏接合酵母利用尿素和瓜氨酸受到阻遏,从而造成酱油中氨基甲酸乙酯前体物不能被充分利用而积累。【结论】盐胁迫阻遏了鲁氏接合酵母对瓜氨酸和尿素的利用,从而造成酱油发酵过程中耐盐细菌所产生的氨基甲酸乙酯前体物的积累。     

Effect of trickle fertigation with three forms of nitrogen on soil pH,levels of extractable nutrients below the emitter and plant growth

The effects of application of nitrogen as calcium nitrate, urea or ammonium sulphate at two rates through the trickle irrigation system on pH and nutrient status of the wetted volume of soil below the emitters and on growth and nutrition of courgette (zucchini) plants (Cucurbita pepo L.) was investigated. Soil acidification, caused by nitrification, occurred to a large extent in the volume of soil immediately below the emitters in the urea and ammonium sulphate treatments. Acidification was greater at the high rate of N addition and more pronounced with ammonium sulphate than urea. A significant amount of applied urea appeared to move through the soil as urea and consequently, at the same rate of N addition, levels of ammonium were lower directly below the emitter and those of nitrate were higher further away from the emitters for the urea than ammonium sulphate treatments. Soil acidification below the emitters resulted in significant decreases in levels of exchangeable Ca, Mg and K and increases in levels of exchangeable Al, EDTA-extractable Fe, Mn, Zn and Cu and bicarbonate-extractable P. Vegetative growth and harvestable yields of courgettes were increased by both irrigation and nitrogen applications. Vegetative growth was generally greater at the low rate of N addition than at the high one and generally followed the order calcium nitrate > urea > ammonium sulphate. However, fruit yields followed the order urea > ammonium sulphate > calcium nitrate and were larger at the high rate of N for urea and ammonium sulphate treatments and unaffected by rate for the calcium nitrate treatments. It is suggested that with fertigation, the form of applied N can have significant physiological effects of plant growth and yields because N may be applied into the root zone on numerous occasions during the growing season.     

Molecular mechanisms of urea transport in plants

Urea is a soil nitrogen form available to plant roots and a secondary nitrogen metabolite liberated in plant cells. Based on growth complementation of yeast mutants and “in-silico analysis”, two plant families have been identified and partially characterized that mediate membrane transport of urea in heterologous expression systems. AtDUR3 is a single Arabidopsis gene belonging to the sodium solute symporter family that cotransports urea with protons at high affinity, while members of the tonoplast intrinsic protein (TIP) subfamily of aquaporins transport urea in a channel-like manner. The following review summarizes current knowledge on the membrane localization, energetization and regulation of these two types of urea transporters and discusses their possible physiological roles in planta.     

The regulation of urease activity in Aspergillus nidulans

Aspergillus nidulans can utilize urea as a sole source of nitrogen but not as a carbon source. Urea is degraded by a urease. Mutation at any one of three genes, ureB, ureC, and ureD, may result in deficient urease activity. The ureB gene is closely linked to ureA, the structural gene for the urea transport protein. The heat lability of a ureB ^– revertant strain, intragenic complementation tests, and the linkage of ureB to ureA suggest that ureB is the urease structural gene. The ureD gene is probably involved in the synthesis or incorporation of a nickel cofactor essential for urease activity. The function of the ureC gene is not known. Urease is not induced but is subject to nitrogen regulation. The urease activities of ammonium-derepressed mutants show that the effector of nitrogen regulation is more likely to be glutamine than ammonium. When glutamine is present in the medium, urease appears to be inactivated by some means which does not involve a newly synthesized protease or a direct interaction between glutamine and urease.     

Dietary arginine degradation is a major pathway in ureagenesis in juvenile turbot (Psetta maxima)

Recent studies indicate that urea excretion is responsive to protein intake and that turbot, Psetta maxima, appear to differ from other species by their urea excretion pattern and levels. This study was undertaken to evaluate the influence of dietary nitrogen and arginine on ureagenesis and excretion in turbot. Juvenile turbot (29 g) were fed semi-purified diets containing graded levels of nitrogen (0-8% dry matter) and arginine (0-3% dry matter) for 6 weeks. Growth data showed that turbot have high dietary nitrogen (123 mg/kg metabolic body weight/day) and very low dietary arginine (9.3 mg/kg metabolic body weight/day) requirements for maintenance. Requirements for unit body protein accretion were 0.31 g and 0.15 g for nitrogen and arginine respectively. Post-prandial plasma urea levels and urea excretion rates showed that urea production was significantly (P<0.05) influenced by dietary arginine levels. While hepatic arginase (EC 3.5.3.1) activity increased significantly (P<0.05) with increasing dietary arginine levels, activities of other enzymes of the ornithine urea cycle were very low. Our data strongly suggest that the ornithine urea cycle is not active in the turbot liver and that dietary arginine degradation is a major pathway of ureagenesis in turbot.     

Response of irrigated dry-seeded rice to nitrogen and phosphorus in a semi-arid environment

Summary Under semi-arid conditions, three field experiments were conducted at Gezira Research Station to determine response of irrigated dry-seeded rice (Oryza sativa L. var IR 2053-206-1-3-6) to addition of nitrogen and phosphorus fertilizers. The experimental treatments included the factorial combinations of seven levels of nitrogen applied as urea and four levels of phosphorus applied as super phosphate. Plant growth and grain yield were significantly and progressively increased with the rise in the levels of added nitrogen and phosphorus. However, response to added phosphorus was restricted by the applied level of nitrogen. The responses of grain yield to nitrogen and phosphorus levels are given by quadratic regression equations. Without addition of nitrogen or phosphorus grain yield averaged 1.52 t/ha compared to 6.07 t/ha with addition of the optimal levels (160 kg N plus 35 kg P/ha). The high potential for rice production in semi-arid environment is evidently restricted by addition of relatively high rates of nitrogen and phosphorus.     

抑制剂和猪粪对尿素氮在稻田土壤中转化的影响

为了阐明稻田土壤中尿素在配施抑制剂和猪粪的情况下不同形态氮的响应特征,探究不同管理措施下稻田土壤氮素保持和供给能力。本研究采用¹⁵N标记尿素进行盆栽试验,设置不施肥(CK)、猪粪(M)、尿素(N)、猪粪+尿素(NM)、尿素+抑制剂(NI)和尿素+抑制剂+猪粪(NIM)6个处理。抑制剂选用脲酶抑制剂(PPD+NBPT)和硝化抑制剂(DMPP)组合,测定返青期、分蘖期和成熟期土壤氮库的分配、尿素氮在氮库中的保存及水稻吸氮状况。结果表明: 施用猪粪显著提高了土壤铵态氮、固定态铵含量和微生物生物量氮,提高了分蘖期尿素氮在各氮库中的贮存,显著增加了水稻产量。与N处理相比,添加抑制剂促进了NH₄⁺的矿物固定和微生物对尿素氮的固持;与NM处理相比,施用抑制剂增加了黏土矿物对¹⁵NH₄⁺的固定。通径分析表明,施用猪粪能促进水稻吸收肥料氮,增加水稻产量;添加抑制剂可通过铵的矿物固定将更多的肥料氮暂时储存;NIM能将更多的氮贮存在微生物生物量氮中,至作物生长后期,铵的释放和微生物周转矿化可为水稻提供更多的有效氮源。在我国北方稻田,NM和NIM处理是推荐的施肥方式。     

Characterization of the affinity for nitrogen, uptake kinetics, and environmental relationships for Prorocentrum minimum in natural blooms and laboratory cultures

During the late spring and early summer of 1998, an extensive bloom of the dinoflagellate Prorocentrum minimum (>93% of phytoplankton cell density) developed in several tributaries of the Chesapeake Bay, USA. In January 1999, a bloom of mixed dinoflagellates (Heterocapsa rotundata, H. triquetra and P. minimum, with P. minimum forming 21% of total phytoplankton cells and 39% of the total biovolume) developed in the mesohaline Neuse Estuary, North Carolina, USA. During these blooms, experiments were carried out to characterize the nitrogen uptake kinetics of these assemblages with ¹⁵N isotopic techniques. Four nitrogenous substrates (NO₃⁻, NH₄⁺, urea, and a mixed amino acids substrate) were used to determine uptake rate and substrate preference. Rates of nitrogen uptake were also measured in P. minimum cultures grown on varying growth nitrogen substrates. The calculated kinetic parameters determined for the P. minimum-dominated field assemblages and the cultures indicated a preference for NH₄⁺. NH₄⁺ was also the primary nitrogen source supporting the blooms. In addition, a high affinity for urea was also found, and urea contributed significantly to the Neuse Estuary bloom. Furthermore, results showed that the regulation of uptake for each of the substrates was different: strong positive relationships between affinity and temperature were found for NH₄⁺ and amino acids, while a negative response was found for NO₃⁻, and very little response to temperature was noted for urea. These differences suggest that a diversity of nitrogen uptake mechanisms may aid the development and maintenance of P. minimum blooms.