Detection and quantification of phnE gene from oil-contaminated soil samples by competitive quantitative PCR

The phnE gene encoding catechol 2,3-dioxygenase belonging to the meta-cleavage pathway was selected as the marker gene and was detected and quantified from soil samples by competitive quantitative PCR. A PCR primer pair was designed based on the phnE gene to amplify the target DNA bands and competitor DNA bands. The phnE gene was detected in two samples of three. In samples S1 and S2, the phnE gene copy number was 6.2×10⁷/g soil and 5.8×10⁷/g soil, respectively. But no phnE gene was detected in sample S3. The target DNA bands were extracted and expressed. The results confirmed that the target DNA bands were the native phnE genes.     

石油污染土壤植物-微生物修复研究进展

依据国内外近10年来有关石油污染土壤生物修复研究的成果,综合阐述了石油污染土壤的植物修复、微生物修复及植物-微生物联合修复方法研究,重点讨论植物-微生物联合作用,主要包括植物根际微生物、根分泌物以及菌根对石油污染物降解的影响,提出了污染土壤原位修复中需要重视的问题.     

Genetic diversity and dynamics of Sinorhizobium meliloti populations nodulating different alfalfa cultivars in Italian soils

We analyzed the genetic diversity of 531 Sinorhizobium meliloti strains isolated from nodules of Medicago sativa cultivars in two different Italian soils during 4 years of plant growth. The isolates were analyzed for DNA polymorphism with the random amplified polymorphic DNA method. The populations showed a high level of genetic polymorphism distributed throughout all the isolates, with 440 different haplotypes. Analysis of molecular variance allowed us to relate the genetic structure of the symbiotic population to various factors, including soil type, alfalfa cultivar, individual plants within a cultivar, and time. Some of these factors significantly affected the genetic structure of the population, and their relative influence changed with time. At the beginning of the experiment, the soil of origin and, even more, the cultivar significantly influenced the distribution of genetic variability of S. meliloti. After 3 years, the rhizobium population was altered; it showed a genetic structure based mainly on differences among plants, while the effects of soil and cultivar were not significant.     

Nitrogen uptake in barley after spring incorporation of 15N-labelled Italian ryegrass into sandy soils

A 5-month laboratory incubation experiment was conducted to study the immobilization-mineralization of N in soil to which dried or composted ¹⁵N labelled ryegrass (Lolium italicum L.) had been added. Cellulose was added to dried ryegrass to give a C/N ratio similar to that of composted ryegrass. Exchangeable NH₄⁺ and NO₃^–, HCl-hydrolyzable N forms, microbial biomass N, NaOH-soluble and insoluble N were monitored during incubation. Dried ryegrass brought about a significant increase in total and labelled exchangeable NH₄⁺, while a rapid immobilization and a subsequent slow release of exchangeable NH₄⁺ was observed in soil with composted ryegrass, together with a resistance to degradation of the labelled humic substances. Compounds synthesized during the composting process and resistant to microbial decomposition probably caused an increase in the amino-acid fraction of soil. These findings suggest that composting can reduce the risk of N losses.     

Comparison of the effects of poultry manure and its biochar on barley growth in petroleum-contaminated soils

This study was conducted to evaluate and compare the effectiveness of two organic amendments [poultry manure (PM) and poultry manure biochar (PMB)] for the degradation of petroleum hydrocarbons in contaminated soils by barley plant at three levels of total petroleum hydrocarbons (TPHs) during 5 months under greenhouse conditions. TPHs removal efficiency and microbial respiration were shown to be higher at soil-cultivated plant than at uncultivated soil and in lowest level of contamination rather than other levels of contamination and at organic amendment treatment than unamended soil. Soil microbial respiration and TPHs degradation in the rhizosphere of barley increased by 15.64 and 12.74% for PM-amended treatment and 28.07 and 26.83% for PMB-amended treatment, respectively, in the 4% TPHs level compared with unamended treatment. Comparison of two amendments showed that in PMB treatment soil, highest dry weight, microbial respiration, and TPHs degradation potential were observed.     

Tolerance of Ricinus communis L. to Cd and screening of high Cd accumulation varieties for remediation of Cd contaminated soils

Response of castor (Ricinus communis L.) to cadmium (Cd) was assessed by a seed-suspending seedbed approach. Length of total radicle was the most sensitive indicator of Cd tolerance among the tested germination and growth characters. The ED₅₀ value for Cd was 11.87 mg L^?1, indicating high Cd tolerance in castor. A pot experiment was conducted by growing 46 varieties of castor under CK (without Cd) and Cd1 (10 mg kg^?1 of Cd) and Cd2 (50 mg kg^?1 of Cd) treatments to investigate genotype variations in growth response and Cd accumulation of castor under different Cd exposures. Castor possessed high Cd accumulation ability; average shoot and root Cd concentrations of the 46 tested varieties were 21.83 and 185.43 mg kg^?1, and 174.99 and 1181.96 mg kg^?1 under Cd1 and Cd2, respectively. Great variation in Cd accumulation was observed among varieties, and Cd concentration of castor was genotype dependent. The correlation between biomass and Cd accumulation was significantly positive, while no significant correlation was observed between Cd concentration and Cd accumulation, which indicated that biomass performance is the dominant factor in determining Cd accumulation ability.     

产铁载体根际菌在植物修复重金属污染土壤中的应用潜力

产铁载体根际菌(siderophore-producing rhizobacteria,SPR)是一类植物根际促生菌,在植物修复重金属污染土壤中可起重要的辅助作用.本文在综合分析国内外相关研究进展的基础上,阐述了SPR缓解重金属植物胁迫毒害的功能及其提高土壤重金属生物活性的机理,并指出SPR在促进重金属污染土壤中植物的生长、增强植物累积重金属的过程等方面具有较好的应用潜力.对当前研究中存在的SPR提高或降低植物累积重金属的矛盾现象也进行了分析.针对当前研究存在的不足,提出今后应深入研究SPR与植物(尤其是重金属超累积植物)之间的相互作用机理,进一步明确影响铁载体螯合、活化土壤重金属的关键因素,综合考虑铁载体对土壤重金属生物活性和对植物吸收重金属的影响,探索在重金属污染土壤中提高SPR定殖能力的强化方法.     

Ecological processes, remediation and regulation of contaminated soils

Land is used for agricultural production, industrial development, urban construction, and environmental beautification, thus soil environment is an important component of living ecosystems for human survival.     

Heavy metals accumulation and distribution in durum wheat and barley grown in contaminated soils under Mediterranean field conditions

Abstract

In the framework of a phytoremediation project in the Apulia region (Italy) a field experiment was carried out in multi-metal contaminated soils. The accumulation and distribution of metals in different plant parts of durum wheat and barley were studied. Further, the application of Bacillus licheniformis strain BLMB1 to soil was evaluated as a means to enhance metal accumulation in plants. The translocation and the bioconcentration factors indicated that wheat and barley do not act as metal accumulators in the field conditions tested, thus phytoextraction by these species would not be recommended as a soil remediation alternative. Application of B. licheniformis improved the accumulation of all metals in roots of wheat and barley, and increased Cd, Cr, and Pb contents in the shoots of barley. Low health risk for humans and animals was evaluated to exist if straw and grain from both cereal crops grown in these contaminated sites are consumed.     

重金属污染土壤修复技术研究的现状与展望

目前重金属污染土壤的修复主要采用物理化学技术和植物修复技术,根据其作用和过程和机物,物理化学技术主要包括化学固化,土壤淋洗和动电修复;植物修复技术包括植物稳定,植物挥发和植物提取,本文就各种修复技术的原理,优缺点,实用性及其国际研究与发展动态作一简述。     

Phytoremediation potential of Helianthus annuus L in sewage-irrigated Indo-Gangetic alluvial soils

The study of phytoremediation potential of Helianthus annuus L was conducted in the sewage-irrigated Indo-Gangetic alluvial soils, India. Calcium @ 1.0% and Zn @ 40 ppm enhanced the yield of H. annuus L and minimized the toxicity of Cr in the investigated soils. The study indicated that H. annuus L is highly sensitive to Cr and Zn in terms of metallic pollution; and may be used as indicator plant. For Cr-phytoremediation, humic acid treatment @ 500 mL/acre induced the Cr-accumulation in roots (p < 0.007) and in shoots (p < 0.015), which was recorded 3.21 and 3.16 mg/kg in root and shoot of H. annuus L, respectively. We suggest that H. annuus L fulfils the necessary condition for efficiently increasing species bioaccumulation after soil treatment with humic acid in Cr-polluted sewage-irrigated soils through soil- plant rhizospheric processes.     

重金属污染土壤植物修复基本原理及强化措施探讨

阐述了植物修复的基本概念及主要作用方式 ,并从土壤中重金属存在形态 ,植物对重金属吸收、排泄和积累以及植物生物学特性与植物修复的关系等方面讨论了重金属污染土壤植物修复的基本原理及局限性和限制性因素 ,从超富集植物性能强化和技术强化两方面探讨了植物修复的强化措施 ,并指出与现代化农业技术相结合是植物修复重金属污染土壤大规模商业应用的一条捷径     

Variation in the uptake of Arsenic, Cadmium, Lead, and Zinc by different species of willows Salix spp. grown in contaminated soils

The experiment assessed the variability of in seven clones of willow plants of high biomass production (Salix smithiana S-218, Salix smithiana S-150, Salix viminalis S-519, Salix alba S-464, Salix ’Pyramidalis’ S-141, Salix dasyclados S-406, Salix rubens S-391). They were planted in a pots for three vegetation periods in three soils differing in the total content of risk elements. Comparing the calculated relative decrease of total metal contents in soils, the phytoextraction potential of willows was obtained for cadmium (Cd) and zinc (Zn), moderately contaminated Cambisol and uncontaminated Chernozem, where aboveground biomass removed about 30% Cd and 5% Zn of the total element content, respectively. The clones showed variability in removing Cd and Zn, depending on soil type and contamination level: S. smithiana (S-150) and S. rubens (S-391) demonstrated the highest phytoextraction effect for Cd and Zn. For lead (Pb) and arsenic (As), the ability to accumulate the aboveground biomass of willows was found to be negligible in both soils. The results confirmed that willow plants show promising results for several elements, mainly for mobile ones like cadmium and zinc in moderate levels of contamination. The differences in accumulation among the clones seemed to be affected more by the properties of clones, not by the soil element concentrations or soil properties. However, confirmation and verification of the results in field conditions as well as more detailed investigation of the mechanisms of cadmium uptake in rhizosphere of willow plants will be determined by further research.     

The role of nitrate in osmoregulation of Italian ryegrass

Summary The role of nitrate in osmotic control was studied with Italian ryegrass grown in a nutrient solution in a climate room. Quantum-flux density, osmotic potential of the nutrient solution and availability of nitrate and chloride were varied independently. Plants at high quantum flux density (650 mol m^–2 s^–1) had a lower osmotic potential, a higher carbohydrate concentration and a lower nitrate concentration than plants at low quantum flux density (310 mol m^–2 s^–1), the decrease in nitrate concentration was osmotically equivalent to the increase in carbohydrate concentration. When nitrate in the nutrient solution was partly replaced by chloride, the chloride taken up substituted an equivalent part of the nitrate in the plant. It is concluded that nitrate plays a role in osmoregulation of the plant and compensates for a shortage of other solutes.     

克拉玛依石油污染土壤微生物群落结构及其代谢特征

为了分析克拉玛依油区内土壤中正构烷烃含量间的差异,微生物群落生理多样性、微生物代谢活性在不同石油污染梯度土壤中的变化规律。本研究采用GC、平板稀释法、Biolog微平板技术探讨了土壤微生物群落特征在3种不同污染程度下的变化情况。研究表明,石油污染土壤烷烃含量与微生物代谢活性呈显著负相关(r=-0.783, p<0.05)。随着石油污染程度增加微生物数量呈下降趋势,不同石油污染土壤中细菌数量占决定优势,细菌>真菌>放线菌。不同石油污染土壤微生物群落对6大碳源的利用体现出差异。主成分分析(PCA)表明,清洁土壤与石油污染土壤对底物利用有明显差异。石油污染严重土样碳源利用率为"酯类>酸类>胺类>氨基酸类>单糖/糖苷/聚合糖类>醇类"。本研究成果为后期修复污染土壤时调整投入的碳源底物等提供科学帮助。     

Synergistic effects of Arbuscular mycorrhizal fungi and plant growth promoting rhizobacteria in bioremediation of iron contaminated soils

Three Arbuscular mycorrhizal fungi (AMF) from Glomus, Acaulospora and Scutellospora, and four plant growth promoting rhizobacteria (PGPR) isolates related to genera Streptomyces, Azotobacter, Pseudomonas and Paenibacillus were found to be effective in phytoremediation of Fe³⁺ contaminated soil where Pennisetum glaucum and Sorghum bicolor were growing as host plants. Co-inoculation of AMF and PGPR showed better results in comparison to either, AMF and PGPR under pot conditions. Both AMF and PGPR were able to produce siderophores. AMF and PGPR associated to P. glaucum and S. bicolor plants increased the extent of iron absorption. AMF and PGPR combination exhibited superior (p < 0.01) phytoremediation efficiency with P. glaucum compared to S. bicolor. These findings warrant further investigations of these synergistic interactions and large-scale in situ studies for bioremediation of iron-contaminated soils.     

Assessing the microbiological,biochemical, soil-physical and hydrological effects of amelioration of degraded soils in semiarid Spain

The way of improving degraded soils fertility and particularly of improving its microbial activity is to add “young” exogenous organic matter that contribute to provide labile organic matter to stimulate the life of the microorganisms existing in the soil. This organic matter will also improve both the retention and hydraulic characteristics of the degraded soils, all this contributing to soil restoration. In this study, the microbiological, biochemical, soil-physical and hydrological effects of the addition of a municipal solid waste compost to a degraded soil in El Campello, SE Spain were evaluated in a field experiment. Soil samples from experimental plots were analyzed 6 and 18 months after soil amendment. In both sampling time treated plots showed significantly higher microbial biomass carbon and dehydrogenase activity values than control, indicating that soil microbial population’s development and activity were stimulated by compost addition, this effect being not ephemeral but lasting in the time. Soil urease activity was not affected by compost addition while protease hydrolysing N-α-benzoil-L-argininamide (BAA) activity was strongly stimulated by the incorporation of compost into the soils. Phosphatase and β-glucosidase activities were also stimulated by the organic amendment, this stimulation being particularly noticeable 18 months after the compost addition. Nevertheless, this increase in soil microbial populations and activity did not result in an increase in soil aggregation and hydrological parameters. This can be due to the high content of carbonates and Ca²⁺ ions in these calcareous soils, that lead to an initially high content of water-stable macroaggregates. Presented at the International Conference on Bioclimatology and Natural Hazards, Poľana nad Detvou, Slovakia, 17–20 September 2007.     

Artificial mycorrhization does not influence the effects of iron availability on Fe,Zn, Cu,Pb and Cd accumulation in leaves of a heavy metal tolerant white poplar clone

Abstract

In this study, the phytoextraction capacity of a heavy metal tolerant white poplar clone, grown in the presence of high iron availability and/or mycorrhizas was evaluated. A large amount of iron in available form was determined in initial high concentrations in leaf, which declined along time and affected Cd, Cu, Pb and Zn accumulation. Natural and artificial mycorrhization did not influence these dynamics.