Problems in application of the terms ‘blastic’ and ‘thallic’ to modes of conidiogenesis in some onygenalean fungi

A woman suffering from acute tubulo-interstitial nephritis was admitted to the hospital ten days after deliberate intoxication by ingestion of Cortinarius orellanus. Orellanine, the main toxin responsible for orellanine poisoning, was detected in biological fluids and renal biopsies. It was assayed by direct spectrofluorimetry on two-dimensional thin-layer chromatograms after specific photodecomposition into orelline. The orellanine concentration was 6.12 mg/l in the plasma (10 days after ingestion). Orellanine levels in renal biopsies were 7 g per 25 mm³ of the first biopsy (13 days after ingestion) and 24 g per 8 mm³ of the second biopsy (6 months later).Taken in part from the doctorate thesis of S. Rapior.     

Theoretical investigation of the structure and acid–base properties of potential 2-thiolumazine tautomeric forms using the AM1 semiempirical method

The relative stabilities of potential tautomers, in both gas and aqueous phases, have been calculated taking into account the entropy effects over the tautomeric equilibria, in order to determine the structure and acid–base properties of the most stable tautomers of 2-thiolumazine in different pH conditions. In each medium, the tautomer with the lowest energy must be the most representative form at the corresponding pH. Knowledge of the effect of the medium in the tautomerization energies allows us to evaluate the possible effect of the medium on the molecular stability. Clearly, the results show that in the gas phase the basicity of the potential donor atoms is N5<N8<O4<S2<N1<N3, and in the aqueous phase S2<(O4N5)<N8<N1<N3, with the higher basicity of N3 and N1 being common to the two phases. In the aqueous phase, the sulfur atom is usually found in the thiol form, whereas the oxygen atom is in the keto form only in the most stable species. Moreover the acid–base character of 2-thiolumazine in aqueous solution has been evaluated from the corresponding AM1 thermodynamic parameters. The results agree well with the experimental data. Electronic supplementary material to this paper can be obtained by using the Springer Link server located at http://dx.doi.org/10.1007/s00894-002-0094-9Electronic Supplementary Material available.     

Isolation of some precursors of 2-methylpyrrole in the Elson–Morgan reaction

1-C-(1-Acetylacetonyl)-2-deoxy-2-(1-methyl-3-oxobut-1-enyl)amino -d-galactitol is obtained from the condensation of 2-amino-2-deoxy-d-galactose with pentane-2,4-dione in anhydrous solvent. On treatment with hot alkali it gives 2-methylpyrrole with 37% yield. By acid hydrolysis under mild conditions the compound loses the N substituent and from the resulting unstable derivative 2-methylpyrrole is obtained (52% yield). It is concluded that derivatives of aminohexoses substituted at C-1 with a dioxopentyl chain are the precursors of 2-methylpyrrole in the Cessi & Serafini-Cessi (1963) modification of the Elson-Morgan reaction. As demonstrated previously, products of condensation of aminohexoses with pentane-2,4-dione at the amino group are not converted directly into 2-methylpyrrole, but this step provides protection of the amino group during condensation at C-1.     

Theoretical studies on the Mo-catalyzed asymmetric intramolecular Pauson-Khand-type [2?+?2?+?1] cycloadditions of 3-allyloxy-1-propynylphosphonates

Density functional theory (DFT) was used to investigate the Mo-catalyzed intramolecular Pauson-Khand reaction of 3-allyloxy-1-propynylphosphonates. All intermediates and transition states were optimized completely at the B3LYP/6-31 G(d,p) level [LANL2DZ(f) for Mo]. In the Mo-catalyzed intramolecular Pauson-Khand reaction, the C–C oxidative cyclization reaction was the chirality-determining step, and the reductive elimination reaction was the rate-determining step. The carbonyl insertion reaction into the Mo–C(sp(3)) bondwas easier than into the Mo–C=C bond. And the dominant product predicted theoretically was of (S)-chirality, which agreed with experimental data. This reaction was solventd ependent, and toluene was the best among the three solvents toluene, CH3CN, and THF.     

PKC SUMOylation inhibits the binding of 14–3–3τ to GluK2

Phosphorylation and SUMOylation of the kainate receptor (KAR) subunit GluK2 have been shown to regulate KAR surface expression, trafficking and synaptic plasticity. In addition, our previous study has shown that a phosphorylation-dependent interaction of 14–3–3τ and GluK2a-containing receptors contributes to the slow decay kinetics of native KAR-EPSCs. However, it is unknown whether SUMOylation participates in the regulation of the interaction between 14–3–3τ and GluK2a-containing receptors. Here we report that SUMOylation of PKC, but not GluK2, represses the binding of 14–3–3τ to GluK2a via decreasing the phosphorylation level of GluK2a. These results suggest that PKC SUMOylation is an important regulator of the 14–3–3 and GluK2a protein complex and may contribute to regulate the decay kinetics of KAR-EPSCs.     

Changes in the flora of some Aegean islets 1968–2000

The flora of 17 islets was studied during the period 1968–2000, with thorough inventories from 1971. At each visit the species present and their population sizes were noted. The flora of the smallest islets of hard rock consisted mainly of perennials, and remained unchanged in terms of species present throughout the period of study. In the larger and more complex islets the major part of the flora consisted of islet-specialised taxa staying for long periods of time. To them are added some other mostly casual species from the close large islands, introduced by human influence, birds or winds and standing for most of the turnover in the islets flora. Few changes were observed in the plant communities of rock crevices, the spray zone of the shores and other constant habitats. The dominant perennial species forming layer of shrubs or subshrubs also mostly remained the same. Most of the changes concerned soil spaces opened by animals or erosion. Most annual species were found to survive by an extreme seed bank strategy. Many taxa common on the neighbouring islands were lacking or casual on the islets. Some others reached dominance or high frequencies that have not been observed on islands or in mainland areas. The conditions for the flora on the Aegean islets are considered to differ fundamentally from that on large isolated islands because they are situated comparatively close among each other and to islands and mainland areas. They are also vulnerable towards catastrophic events and therefore frequently presenting opened targets for invasions. The islet-specialised taxa are found to retain good ability for dispersal over moderately long distances. The grazing of the islets is stated to be an important factor for the evolution of islet adapted and specialised taxa.     

Epidemiological and etiological investigation of dengue fever in the Fujian province of China during 2004–2014

Dengue fever(DF) is a vector-borne disease and a tremendous socioeconomic burden on tropical and subtropical countries worldwide. To explore the characteristics of DF epidemic in the Fujian province, information of DF cases in Fujian during 2004–2014 was collected and analyzed. The complete E genes of 48 viral isolates were amplified and sequenced for phylogenetic analysis. A total of 733 cases was reported, of which 612(83.5%) occurred during the peak period from August to October. Additionally, 76%(190/250) of imported cases originated from Southeast Asia countries, by the epidemiological investigation. Phylogenetic analysis of the 48 viral isolates revealed that three genotypes(I, IV, V) of DENV1, and one genotype each of DENV2(cosmopolitan) and DENV3(I) circulated in Fujian during 2004–2014. Similar to the results of the epidemiological investigations, the source of most of the viral isolates, including imported and indigenous cases, may be Southeast Asia countries; however, importation from adjacent provinces was also observed in recent years. Overall, DF is considered an imported epidemic disease in Fujian. Increasing diversity of the viral source and geographic expansion of the area affected by DF in recent years highlights the necessity for strengthening surveillance of the DF epidemic and developing strategies for DF prevention and control in Fujian.     

Modeling the Winter–to–Summer Transition of Prokaryotic and Viral Abundance in the Arctic Ocean

One of the challenges in oceanography is to understand the influence of environmental factors on the abundances of prokaryotes and viruses. Generally, conventional statistical methods resolve trends well, but more complex relationships are difficult to explore. In such cases, Artificial Neural Networks (ANNs) offer an alternative way for data analysis. Here, we developed ANN-based models of prokaryotic and viral abundances in the Arctic Ocean. The models were used to identify the best predictors for prokaryotic and viral abundances including cytometrically-distinguishable populations of prokaryotes (high and low nucleic acid cells) and viruses (high- and low-fluorescent viruses) among salinity, temperature, depth, day length, and the concentration of Chlorophyll-a. The best performing ANNs to model the abundances of high and low nucleic acid cells used temperature and Chl-a as input parameters, while the abundances of high- and low-fluorescent viruses used depth, Chl-a, and day length as input parameters. Decreasing viral abundance with increasing depth and decreasing system productivity was captured well by the ANNs. Despite identifying the same predictors for the two populations of prokaryotes and viruses, respectively, the structure of the best performing ANNs differed between high and low nucleic acid cells and between high- and low-fluorescent viruses. Also, the two prokaryotic and viral groups responded differently to changes in the predictor parameters; hence, the cytometric distinction between these populations is ecologically relevant. The models imply that temperature is the main factor explaining most of the variation in the abundances of high nucleic acid cells and total prokaryotes and that the mechanisms governing the reaction to changes in the environment are distinctly different among the prokaryotic and viral populations.     

Theoretical investigation on the covalence in AgRnX and XAgRn (X = F – I)

CCSD(T) calculations were performed to investigate the stabilities and interaction mechanisms of the AgRnX and XAgRn (X?=?F – I) series. Dissociation energies and frontier orbital properties demonstrate an increased trend of stabilities. Ag spd hybrids and Rn/X sp hybrids come into the σ_Ag-Rn and σ_Ag-X bonding orbital. The nature of Ag-Rn, Ag-X and Rn-X interactions were investigated by atoms in molecules (AIM) theory. The negative energy density and positive Laplacian values, as well as small electron densities at bond critical points (BCPs), characterize the moderate strength with partial covalence of interactions. BCP properties (?G/V and G/ρ), electron density deformations and natural resonance theory (NRT) results display increased covalence down the periodic table.     

Theoretical investigation of second-order nonlinear optical response by linking hexamolybdate with graphene in the donor–acceptor (D–A) framework

The graphenes and polyoxometalates (POMs) have been investigated individually for finding a material with intrinsic nonlinear optical (NLO) behaviours. In this study, we designed a novel molecular hybrid containing POM cluster linked with nanographene. We could be able to design a material with very large second-order NLO response. The Coulomb-attenuating method (CAM–B3LYP) is used with the LANL2DZ basis set for molybdenum atoms and both 6–31G (d) and 6–31+G (d) basis sets for main group elements to calculate polarisability and first hyperpolarisability. The second-order polarisability of the system is significantly enhanced by replacing NH₂ or NO₂ with hexamolybdate in [NO₂–HBC(derivative of hexabenzocoronene)–NH₂] from 33.33 × 10^? 30 esu (system 1) to 57.71 × 10^? 30 esu (system 2) and 231.10 × 10^? 30 esu (system 3), respectively. The time-dependent density functional theory (TDDFT) calculations show that the charge transfer from polyanion to graphene in systems 2 and 3 is responsible for the NLO properties of this kind of compound. We believe that the novel designed link between graphene and POMs is a door for further studies to find materials with an excellent NLO response.     

Molecular simulation of cage occupancy and selectivity of binary THF–H2 sII hydrate

The hydrogen capacity of the binary THF–H₂ sII hydrate is determined by the cage occupancy and by the selectivity of guest molecules. Grand canonical Monte Carlo (GCMC) simulation is used to study the cage occupancy and selectivity of guest molecules from the equilibrium configuration of the binary sII hydrate. The cage framework is regarded as a rigid body and the number of guest molecules is varied to preserve the grand canonical ensemble. The occupancy and selectivity were investigated at a temperature of 270 K for pressures ranging from 0.1 to 200 MPa. It was found that most large cages select THF as guest molecules while small cages include only hydrogen molecules. Multiple occupancy of hydrogen, up to four molecules in large cages and two molecules in small cages, was found as the pressure increases. GCMC results show that the hydrogen capacity is approximately 1.1 wt% at 200 MPa.     

Pattern Cladistics and the ‘Realism–Antirealism Debate’ in the Philosophy of Biology

Despite the amount of work that has been produced on the subject over the years, the ‘transformation of cladistics’ is still a misunderstood episode in the history of comparative biology. Here, I analyze two outstanding, highly contrasting historiographic accounts on the matter, under the perspective of an influential dichotomy in the philosophy of science: the opposition between Scientific Realism and Empiricism. Placing special emphasis on the notion of ‘causal grounding’ of morphological characters (sensu Olivier Rieppel) in modern developmental biology’s (mechanistic) theories, I arrive at the conclusion that a ‘new transformation of cladistics’ is philosophically plausible. This ‘reformed’ understanding of ‘pattern cladistics’ entails retaining the interpretation of cladograms as ‘schemes of synapomorphies’, but in association to construing cladogram nodes as ‘developmental-genetic taxic homologies’, instead of ‘standard Darwinian ancestors’. The reinterpretation of pattern cladistics presented here additionally proposes to take Bas Van Fraassen’s ‘constructive empiricism’ as a philosophical stance that could properly support such analysis of developmental-genetic data for systematic purposes. The latter suggestion is justified through a reappraisal of previous ideas developed by prominent pattern cladists (mainly, Colin Patterson), which concerned a scientifically efficient ‘observable/non-observable distinction’ linked to the conceptual pair ‘ontogeny and phylogeny’. Finally, I argue that a robust articulation of Antirealist alternatives in systematics may provide a rational basis for its disciplinary separation from evolutionary biology, as well as for a critical reconsideration of the proper role of certain Scientific Realist positions, currently popular in comparative biology.     

Molecular Clocks and the Timing of the Placental and Marsupial Radiations in Relation to the Cretaceous–Tertiary Boundary

Paleostratigraphic estimates of divergence time for nine independent cladogenic events within Mammalia, ranging from 14 to 130 million years, were regressed against Tamura–Nei-corrected 12S rRNA transversions. Relative rate-adjusted distances were also regressed against paleostratigraphic divergence times. The resulting equations were used to estimate interordinal divergence times within Eutheria and Metatheria for a data set that includes representatives of all orders in each infraclass. Without the adjustment for rate variation, divergence times range from 34 to 156 million years for placental orders, versus 32 to 86 million years for marsupial orders. With rate adjustments, the range of divergence estimates decreases to 53 to 133 million years for placentals versus 40 to 79 million years for marsupials. The effect of rate adjustments is most noticeable for carnivores and perissodactyls, where rates are slow, and proboscideans, where rates are fast. In agreement with studies based on nuclear genes, both unadjusted and rate-adjusted estimates of sequence divergence indicate that the majority of placental orders originated before the terminal Cretaceous extinction. Exceptions include the perissodactyl–carnivore split and cladogenesis among paenungulate orders. Most marsupial orders, in turn, may have originated in the early Tertiary although didelphimorphs, at least, appear to have split from other lineages in the late Cretaceous. Marsupial divergence times based on 12S rRNA data are in good agreement with estimates based on single-copy DNA hybridization and disagree with the suggestion of Hershkovitz (1992) that Dromiciops separated from other marsupials in the Jurassic.     

PTB Binds to the 3’ Untranslated Region of the Human Astrovirus Type 8: A Possible Role in Viral Replication

The 3′ untranslated region (3′UTR) of human astroviruses (HAstV) consists of two hairpin structures (helix I and II) joined by a linker harboring a conserved PTB/hnRNP1 binding site. The identification and characterization of cellular proteins that interact with the 3′UTR of HAstV-8 virus will help to uncover cellular requirements for viral functions. To this end, mobility shift assays and UV cross-linking were performed with uninfected and HAstV-8-infected cell extracts and HAstV-8 3′UTR probes. Two RNA-protein complexes (CI and CII) were recruited into the 3′UTR. Complex CII formation was compromised with cold homologous RNA, and seven proteins of 35, 40, 45, 50, 52, 57/60 and 75 kDa were cross-linked to the 3′UTR. Supermobility shift assays indicated that PTB/hnRNP1 is part of this complex, and 3′UTR-crosslinked PTB/hnRNP1 was immunoprecipitated from HAstV-8 infected cell-membrane extracts. Also, immunofluorescence analyses revealed that PTB/hnRNP1 is distributed in the nucleus and cytoplasm of uninfected cells, but it is mainly localized perinuclearly in the cytoplasm of HAstV-8 infected cells. Furthermore, the minimal 3′UTR sequences recognized by recombinant PTB are those conforming helix I, and an intact PTB/hnRNP1-binding site. Finally, small interfering RNA-mediated PTB/hnRNP1 silencing reduced synthesis viral genome and virus yield in CaCo2 cells, suggesting that PTB/hnRNP1 is required for HAstV replication. In conclusion, PTB/hnRNP1 binds to the 3′UTR HAstV-8 and is required or participates in viral replication.     

An eco-friendly route of γ-Fe2O3 nanoparticles formation and investigation of the mechanical properties of the HPMC-γ-Fe2O3 nanocomposites

Bioprocess and Biosystems Engineering - In recent times, biosynthetic approaches toward the synthesis of nanoparticles have been shown to have several advantages over physical and chemical methods....     

Intensity and type of EEG reactions to a hyperventilation test and their relationship with changes in patients’ subjective state of health and some characteristics of the initial EEG pattern

Some EEG characteristics at rest and after a 3-min hyperventilation test (HVT) were studied in 100 adult patients along with the changes in their current subjective state of health, assessed with the help of a special three-stage survey and a questionnaire. Our findings demonstrated a clear correlation between the rate of changes in the current subjective state of health of a patient, the average number of observed symptoms, and the intensity of the EEG reaction. With regard to the methodological aspect, we recorded a difference in the assessment of subjective data obtained through the different types of survey. The frequency of two types of high-amplitude slow waves during the HVT (recorded in 21% of patients), as well as of paroxysmal epileptiform activity, was studied, and their correlation with the clinical manifestations of epilepsy was analyzed. Our study showed that the intensity of the general EEG reaction to the HVT is correlated with the presence of EEG disorders, such as minor bursts in the initial EEG pattern; the probability of high-amplitude slow activity during the HVT is especially high if these minor bursts are recorded at rest. We also noted a certain relationship between the intensity of hyperventilation-related EEG changes (and, therefore, the rate of changes in the current subjective state of health of a patient) and characteristics of the initial pattern, such as α-rhythm disorders and an increase in the intensity of slow or slow and frequent activity at rest.     

From d’Orbigny to the Devonian: some thoughts on the history of the stratotype concept

D’Orbigny’s stratigraphic contributions were enormous, both practical and theoretical. In his practice, d’Orbigny realised the central importance of using fossil faunas to correlate strata across different countries. His ‘succession chronologique des âges du monde’ (of 1852) recognised 5 periods and 27 stages (ignoring his ‘époque actuelle’). The great majority of the latter were from two Periods, Jurassic (stages 7 to 16) or Cretaceous (17 to 23). D’Orbigny described the palaeontological characteristics, and geographical extensions, of each. Some stages he based on countries he never visited and although he never specified ‘stratotype’ localities, he referred to some as ‘étalon’, ‘le mieux’ or ‘le plus beau’. These leads proved crucial when, in the mid 20th century, stratigraphers realised that definitions of chrono-stratal units must be attempted. The first attempts at typification simply followed zoology, where a type specimen tries to define a central position within the morphological variation of a species. In 1962, an early attempt was made to define Jurassic stages by three type horizons at different type localities (or stratotypes as they were now called) for each. A central horizon was chosen as ‘lectotype section’ and upper and lower boundaries for each were defined elsewhere. In France, it was preferred to investigate original intentions at named localities, through unit-stratotypes. These allowed some nationalistic pride, since France was the home of so many d’Orbignyan stages. 1980 saw the publication Les Étages français et leurs Stratotypes. However, British Silurian stratigraphers had realised that such zoologically based concepts would produce conflict, when any defined upper boundary stratotype conflicted with the defined lower boundary of a superjacent unit. They suggested, from 1962, to define only lower boundaries, via ‘golden spikes’, at basal-boundary stratotypes. This was the method chosen for the basal Devonian stratotype at Klonk, Czech Republic, defined in 1972, and a method adopted globally from 1986. However, this was when correlations were still largely based on fossils. The explosion of so many other stratigraphies since, based on magnetic or chemical records, events etc, has produced a first reaction against the idea that such stratotypes should be so defined, while a second, potentially more major claim, is that any ‘golden spike’ concept may no longer ‘glitter’, as competing stratotype concepts may be holding back stratigraphic progress.     

Theoretical study of the complementarity in halogen–bonded complexes involving nitrogen and halogen as negative sites

The conformations of trialkylphosphates (alkyl = propyl, butyl, pentyl and hexyl) in various diluents were studied by molecular dynamics simulations. The population density of various conformers of trialkylphosphate in different diluents such as water and n-dodecane was determined. The Helmholtz energy change accompanied by the transition between various conformations was computed. The aggregation behavior of tributylphosphate in water and water-dodecane medium was studied.