Search of Extremely Sensitive Near-Infrared Plasmonic Interfaces: A Theoretical Study

The sensitivity of the wavelength position of localized surface plasmon resonance (LSPR) in metal nanostructures to local changes in the refractive index has been widely used for label-free detection strategies. Tuning the optical properties of the nanostructures from the visible to the infrared region is expected to have a drastic effect on the refractive index sensitivity. Here, we theoretically investigate the optical response of a newly designed plasmonic interface to changes in the bulk refractive index by the finite difference time domain method. It consists of a structured interface, where the planar interface is superposed with dielectric pillars 30 nm in height and 125 nm in length with a separation distance of 15 nm. The pillars are covered with U-shaped gold nanostructures of 50 nm in height, 125 nm in length, and 5 nm of gold base thickness. The whole structure is finally covered with a 5-nm thick dielectric layer of n ₂?=?2.63. This plasmonic structure shows bulk refractive index sensitivities up to 1750 nm/RIU (RIU : refractive index unit) in the near infrared (λ?=?2621 nm). The enhanced sensitivity is a consequence of the extremely enhanced electrical field between the gold nanopillars of the plasmonic interface.     

Modulation of Visible and Near-Infrared Surface Plasmon Resonance of Au Nanoparticles Based on Highly Doped Graphene

We study an active modulation of surface plasmon resonance (SPR) of Au nanoparticles based on highly doped graphene in visible and near-infrared regions. We find that compared to the traditional metal SPR, the SPR of Au nanoparticles based on graphene causes a remarkable blue shift. The field intensity in the gap is redistributed to standing wave. The field intensity of standing wave is about one order of magnitude higher than the traditional model. Moreover, the SPR of Au nanoparticles can be actively modulated by varying the graphene Fermi energy. We find the maximum modulation of field intensity of absorption spectra is more than 21.6 % at λ?=?822?nm and the amount of blue shift is 17.4 nm, which is about 2.14 % of the initial wavelength λ ₀?=?813.4?nm, with increasing monolayer graphene Fermi energy from 1.0 to 1.5 ev. We find that the SPR sensitivity to the refractive index n of the environment is about 642 nm per refractive index unit (RIU). The SPR wavelengths have a big blue shift, which is about 33 nm, with increasing number of graphene layers from 1 to 3, and some shoulders on the absorption spectra are observed in the models with multilayer graphene. Finally, we study the Au nanorod array based on monolayer graphene. We find that the blue shift caused by the graphene increases from 14 to 24 nm, with increasing gap g _y from 10 to 20 nm. Then, it decreases from 24 to 14 nm, with increasing gap g _y from 20 to 50 nm. This study provides a new way for actively modulating the optical and optoelectronic devices.     

Highly Sensitive Side-Polished Birefringent PCF-Based SPR Sensor in near IR

We propose a highly sensitive side-polished birefringent photonic crystal fiber (PCF) sensor based on surface plasmon resonance (SPR). The polished surface of the proposed structure is coated with indium tin oxide (ITO) to excite plasmon and the analytes can be placed on the flat surface easily instead of filling the voids. The birefringent nature of the structure helps in coupling more fields to the ITO-dielectric interface. With the optimum thickness of 110 nm of ITO, the structure shows a maximum wavelength sensitivity of 17000 nm/RIU with a resolution of 5.8?×?10^?6 RIU. Further this also showed an amplitude sensitivity of 74 RIU^?1 along with a resolution of 1.35?×?10^?5 RIU. Moreover, the effect of bending on this low loss structure is also analyzed.     

Strong Near-infrared Avalanche Photoluminescence from Ag Nanowire Arrays

Ag nanowire (NW) arrays with NW diameter d _NW?=?12–120 nm were electrodeposited in anodic aluminum oxide templates. Strong avalanche photoluminescence (PL) from Ag NW arrays with small d _NW were observed near 914 nm by using picosecond laser at the excitation wavelength 808 nm, which is originated from the plasmon-enhanced radiative intraband transitions. The peak PL intensity of the avalanche PL from the sample with small diameter d _NW?=?12 nm is about 10² times stronger than that of the linear PL from the sample with large diameter d _NW?=?120 nm. The opposite excitation polarization dependence and emission polarization distribution of the PL from Ag NW array with d _NW?=?12 nm and d _NW?=?120 nm were also observed.     

Emission and Transmission Properties of a Doubly Resonant 3D Nanodisk Yagi–Uda Antenna for Wireless Optical Communications

In this paper, a novel doubly resonant three-dimensional (3D) nanodisk Yagi–Uda antenna, conceived for realizing wireless optical links within electronic circuits, is proposed. The prominent emitting properties of this nanoantenna have been deeply investigated both in the near and far field through a useful comparison with a more traditional 3D nanorod Yagi–Uda antenna. The behavior of the nanodisk antenna, both configured as a single nanoantenna and arranged in planar arrays, have been illustrated, emphasizing its improved performances with relation to crucial aspects as directional features, wavelength bands of operation, frequency tuning, and polarization influence on radiation. In particular, the single nanodisk antenna has been accurately designed to enhance the transmission feature in the near field at the wavelengths λ?=?1.3 and λ?=?1.55 μm. Also, the emission pattern of the array of nanodisk antennas has been properly tailored to ensure high peaks of directivity and narrow beam width in those ranges. Hence, efficient unidirectional angle patterns have been shaped for any operation wavelength and dimensions of the array, reaching extremely effective outcomes for a 3?×?3 array, which exhibits a maximum of directivity of 19 and 17.6 and ?3 dB points at 18° and 21° for λ?=?1.3 and λ?=?1.55 μm, respectively.     

A Novel Diamond Ring Fiber-Based Surface Plasmon Resonance Sensor

We propose a highly sensitive novel diamond ring fiber (DRF)-based surface plasmon resonance (SPR) sensor for refractive index sensing. Chemically active plasmonic material (gold) layer is coated inside the large cavity of DRF, and the analyte is infiltrated directly through the fiber instead of selective infiltration. The light guiding properties and sensing performances are numerically investigated using the finite element method (FEM). The proposed sensor shows a maximum wavelength and amplitude interrogation sensitivity of 6000 nm/RIU and 508 RIU^?1, respectively, over the refractive index range of 1.33–1.39. Additionally, it also shows a sensor resolution of 1.67 × 10^?5 and 1.97 × 10^?5 RIU by following the wavelength and amplitude interrogation methods, respectively. The proposed diamond ring fiber has been fabricated following the standard stack-and-draw method to show the feasibility of the proposed sensor. Due to fabrication feasibility and promising results, the proposed DRF SPR sensor can be an effective tool in biochemical and biological analyte detection.     

Highly Sensitive SPR Sensor Based on D-shaped Photonic Crystal Fiber Coated with Indium Tin Oxide at Near-Infrared Wavelength

A surface plasmon resonance (SPR) sensor based on D-shaped photonic crystal fiber (PCF) coated with indium tin oxide (ITO) film is proposed and numerically investigated. Thanks to the adjustable complex refractive index of ITO, the sensor can be operated in the near-infrared (NIR) region. The wavelength sensitivity, amplitude sensitivity, and phase sensitivity are investigated with different fiber structure parameters. Simulation results show that ～6000 nm/refractive index unit (RIU), ～148/RIU, and ～1.2?×?10⁶ deg/RIU/cm sensitivity can be achieved for wavelength interrogation, amplitude interrogation, and phase interrogation, respectively, when the environment refractive index varies between 1.30 and 1.31. It is noted that the wavelength sensitivity and phase sensitivity are more pronounced with larger refractive index. The proposed SPR sensor can be used in various applications, including medicine, environment, and large-scale targets detection.     

Analytical Ultracentrifugation Sedimentation Velocity for the Characterization of Detergent-Solubilized Membrane Proteins Ca++-ATPase and ExbB

We have investigated the potential of new methods of analysis of sedimentation velocity (SV) analytical ultracentrifugation (AUC) for the characterization of detergent-solubilized membrane proteins. We analyze the membrane proteins Ca⁺⁺-ATPase and ExbB solubilized with DDM (dodecyl-β-d-maltoside). SV is extremely well suited for characterizing sample heterogeneity. DDM micelles (s _20w?=?3.1 S) and complexes (Ca⁺⁺-ATPase: s _20w?=?7.3 S; ExbB: s _20w?=?4 S) are easily distinguished. Using different detergent and protein concentrations, SV does not detect any evidence of self-association for the two proteins. An estimate of bound detergent of 0.9 g/g for Ca⁺⁺-ATPase and 1.5 g/g for ExbB is obtained from the combined analysis of SV profiles obtained using absorbance and interference optics. Combining s _20w with values of the hydrodynamic radius, R _s?=?5.5 nm for Ca⁺⁺-ATPase or R _s?=?3.4 nm for ExbB, allows the determination of buoyant molar masses, M _b. In view of their M _b and composition, Ca⁺⁺-ATPase and ExbB are monomers in our experimental conditions. We conclude that one of the main advantages of SV versus other techniques is the possibility to ascertain the homogeneity of the samples and to focus on a given complex even in the presence of other impurities or aggregates. The relative rapidity of SV measurements also allows experiments on unstable samples.     

Tunable Surface Plasmon Resonance Sensor Based on Photonic Crystal Fiber Filled with Gold Nanoshells

We present a photonic crystal fiber (PCF)-based surface plasmon resonance (SPR) sensor, whose operating wavelength range is tunable. Gold nanoshells, consisting of silica cores coated with thin gold shells, are designed to be the functional material of the sensor because of their attractive optical properties. It is demonstrated that the resonant wavelength of the sensor can be precisely tuned in a broad range, 660 nm to 3.1 μm, across the visible and near-infrared regions of the spectrum by varying the diameter of the core and the thickness of the shell. Furthermore, the effects of structural parameters of the sensor on the sensing properties are systematically analyzed and discussed based on the numerical simulations. It is observed that a high spectral sensitivity of 4111.4 nm/RIU with the resolution of 2.45 × 10^?5 RIU can be achieved in the sensing range of 1.33–1.38. These features make the sensor of great importance for a wide range of applications, especially in biosensing.     

Yield and kinetic constants estimation in the production of hydroxy fatty acids from oleic acid in a bioreactor by Pseudomonas aeruginosa 42A2

We modelled the production of hydroxy fatty acids from oleic acid by Pseudomonas aeruginosa 42A2 in a bioreactor with a non-dispersive aeration system. First, we designed an adapted wetted-wall gas-absorption column, offering a k _La value of 39.9 h^?1, to enhance oxygen absorption in the culture media and prevent foam formation. Then, we analysed different kinetic models to simulate the yield coefficients and the kinetic constants in this bacterial transformation. Monod model fitting (μ _max1?=?0.51 h^?1, K _S1?=?1.60 C-mol l^?1, μ _max2?=?0.12 h^?1, K _S2?=?0.035 C-mol l^?1, and k ₂?=?0.033 h^?1) showed a good accuracy with the experimental data sets and was chosen for its simplicity. Lastly, mass balances were carried out to establish the stoichiometry of this biotransformation with the following yield coefficients, Υ _X/OA, Υ _{X/(10S)-HPOME} and Υ _{(10S)-HPOME/(7S10S)-HPOME} of 0.172, 0.347 and 2.388 C-mol C-mol^?1, respectively.     

A simple method for simultaneous RP-HPLC determination of indolic compounds related to bacterial biosynthesis of indole-3-acetic acid

In this short technical report, we present a fast and simple procedure for sample preparation and a single-run Reversed Phase High Performance Liquid Chromatography (RP-HPLC) determination of seven indoles (indole-3-acetic acid, indole-3-acetamide, indole-3-acetonitrile, indole-3-ethanol, indole-3-lactic acid, tryptamine and tryptophan) in bacterial culture supernatants. The separation of the analytes, after a single centrifugal filtration clean-up step, was performed using a gradient elution on a symmetry C8 column followed by fluorimetric detection (λ_ex = 280/λ_em = 350 nm). The calibration curves were linear for all of the studied compounds over the concentration range of 0.0625–125 μg mL^?1 (r ²  ≥ 0.998) and the limits of detection were below 0.015 μg mL^?1. The applicability of the method was confirmed by analysis of Pseudomonas putida culture supernatants.     

Coupled-Resonator-Induced Fano Resonances for Plasmonic Sensing with Ultra-High Figure of Merits

Fano resonances are numerically predicted in an ultracompact plasmonic structure, comprising a metal-isolator-metal (MIM) waveguide side-coupled with two identical stub resonators. This phenomenon can be well explained by the analytic model and the relative phase analysis based on the scattering matrix theory. In sensing applications, the sensitivity of the proposed structure is about 1.1?×?10³ nm/RIU and its figure of merit is as high as 2?×?10⁵ at λ?=?980 nm, which is due to the sharp asymmetric Fano line-shape with an ultra-low transmittance at this wavelength. This plasmonic structure with such high figure of merits and footprints of only about 0.2 μm² may find important applications in the on-chip nano-sensors.     

Effect of larch (Larix gmelini Rupr.) root exudates on Manchurian walnut (Juglans mandshurica Maxim.) growth and soil juglone in a mixed-species plantation

The establishment and productivity of a Manchurian walnut (Juglans mandshurica Maxim.) plantation can be improved by inter-planting with larch (Larix gmelini Rupr.) in Northeast China, but the potential mechanism remains obscure. We carried out a series of experiments in a 20-year-old mixed-species plantation, as well as in Manchurian walnut and larch plantations. Manchurian walnut seedlings had difficulty surviving in the Manchurian walnut plantation because their growth was inhibited by their own soil and root exudates. In sharp contrast, Manchurian walnut seedlings grew well in larch and mixed-species plantations. Larch soil and root exudates greatly stimulated the growth of Manchurian walnut seedlings in controlled conditions. In particular, larch root exudates can increase the soil microbial populations, including bacteria, actinomycetes, azotobacter and cellulose-decomposing microorganisms; larch root exudates can also increase the enzyme activities of saccharase, urease, proteinase and polyphenol oxidase. Significant results led to a rapid degradation of the root-exuded phytotoxic juglone from Manchurian walnut. Manchurian walnut root exudates contained juglone at a high concentration of 121.3?±?6.6 mg g^?1, while juglone concentrations in the soil beneath Manchurian walnut trees ranged from 2.9–6.2 µg g^?1 soil. It appears from the results that juglone may be released from Manchurian walnut roots into the soil in a sufficient quantity but rapidly degrades due to interactions with soil factors. Furthermore, juglone was more resistant toward degradation in the Manchurian walnut soil (t _1/2 ?=?7.36?±?0.63 h) when compared to the larch soil (t _1/2 ?=?4.66?±?0.82 h). The results suggest that larch may improve the establishment and productivity of Manchurian walnut in a mixed-species plantation through the release of root exudates.     

Progress in Dodecafluoropentane Emulsion as a Neuroprotective Agent in a Rabbit Stroke Model

Dodecafluoropentane emulsion (DDFPe) in 250 nm nanodroplets seems to swell modestly to accept and carry large amounts of oxygen in the body at >29 °C. Small particle size allows oxygen delivery even into hypoxic tissue unreachable by erythrocytes. Using permanent cerebral embolic occlusion in rabbits, we assessed DDFPe dose response as a neuroprotectant at 7 and 24 h post-embolization without lysis of arterial obstructions and investigated blood pharmacokinetics. New Zealand White rabbits (N?=?56) received cerebral angiography and embolic spheres (diameter?=?700–900 μm) occluded middle and/or anterior cerebral arteries. Intravenous DDFPe dosing (2 %?w/v emulsion) began at 60 min and repeated every 90 min until sacrifice at 7 or 24 h post-embolization. Seven-hour groups: (1) control (embolized without treatment, N?=?6), and DDFPe treatment: (2) 0.1 ml/kg (N?=?7), (3) 0.3 ml/kg (N?=?9), (4) 0.6 ml/kg (N?=?8). Twenty-four-hour groups: (5) control (N?=?16), and DDFPe treatment: (6) 0.1 ml/kg (N?=?10). Infarcts as percent of total brain volume were determined using vital stains on brain sections. Other alert normal rabbits (N?=?8) received IV doses followed by rapid arterial blood sampling and GC-MS analysis. Percent infarct volume means significantly decreased for all DDFPe-treated groups compared with controls, p?=?<0.004 to <0.03. Blood DDFP (gas) half-life was 1.45?±?0.17 min with R?=?0.958. Mean blood clearance was 78.5?±?24.9 ml/min/kg (mean?±?SE). Intravenous DDFPe decreases ischemic stroke infarct volumes. Blood half-life values are very short. The much longer therapeutic effect, >90 min, suggests multiple compartments. Lowest effective dose and maximum effective therapy duration are not yet defined. Rapid development is warranted.     

Fed-Batch Cultivation of Arthrospira platensis Using Carbon Dioxide from Alcoholic Fermentation and Urea as Carbon and Nitrogen Sources

To reduce CO₂ emissions from alcoholic fermentation, Arthrospira platensis was cultivated in tubular photobioreactor using either urea or nitrate as nitrogen sources at different light intensities (60 μmol m^?2 s^?1?≤?I?≤?240 μmol m^?2 s^?1). The type of carbon source (pure CO₂ or CO₂ from fermentation) did not show any appreciable influence on the main cultivation parameters, whereas substitution of nitrate for urea increased the nitrogen-to-cell conversion factor (Y _X/N ), and the maximum cell concentration (X _m ) and productivity (P _X ) increased with I. As a result, the best performance using gaseous emissions from alcoholic fermentation (X _m ?=?2,960?±?35 g m^?3, P _X ?=?425?±?5.9 g m^?3 day^?1 and Y _X/N ?=?15?±?0.2 g g^?1) was obtained at I?=?120 μmol m^?2 s^?1 using urea as nitrogen source. The results obtained in this work demonstrate that the combined use of effluents rich in urea and carbon dioxide could be exploited in large-scale cyanobacteria cultivations to reduce not only the production costs of these photosynthetic microorganisms but also the environmental impact associated to the release of greenhouse emissions.     

Plasmonic Y-splitters of High Wavelength Resolution Based on Strongly Coupled-Resonator Effects

Based on the strongly coupled-resonator effects, a high wavelength-resolution plasmonic Y-splitter, consisting of a Y-branch metal–insulator–metal waveguide with a baffle in each channel, is numerically investigated using the finite element method. Due to the coupling of different resonators (with nearly equal bandwidths) in the Y-splitter, sharp and asymmetric transmission spectra occur. This greatly increases the wavelength resolution of the Y-splitter to be Δλ?≈?15 nm, which is significantly narrower than the bandwidth of the single resonator (Δλ _FWHM?≈?110 nm). An analytic model based on the scattering matrix theory is provided to describe and explain this phenomenon.     

Biomass and Total Lipid Content Assessment of Microalgal Cultures Using Near and Short Wave Infrared Spectroscopy

The technique of near and short wave near-infrared spectroscopy was assessed with respect to analysis of dry matter and lipid content of microalgae with potential for biodiesel production. Microalgal culture samples were filtered through GF/C filter papers and spectral measurements of wet and oven dried (60 °C overnight) filter papers over the ranges of 300–1,100 nm and 1,100–2,500 nm were recorded. Partial least square models on culture biomass and lipid content for combined species data were poor in terms of RMSECV, R _CV and the ratio of RMSECV to SD. A single species model for C. vulgaris based on 1,100–2,500 nm spectra of dry filtrate supported a model with RMSECV, R _CV and SDR values of 0.32 g L^?1, 0.955 and 3.38 for biomass and 0.089 g L^?1, 0.874 and 2.06 with lipid, respectively. However, the dry filtrate models on biomass and lipid content performed poorly in the prediction of samples drawn from an independent series of C. vulgaris cultured under N-, P- and Fe-limited growth trial. Thus, while the near-infrared spectroscopy technique has potential for assessment of dry matter and lipid content of microalgal cultures using a dried filtrate sample, further work is required to examine the limits to model robustness.