Differential population history in the migratory catfishes Brachyplatystoma flavicans and Pseudoplatystoma fasciatum(Pimelodidae) from the Bolivian Amazon assessed with nuclear and mitochondrial DNA markers

The catfishes Brachyplatystoma flavicans ( n  = 49) and Pseudoplatystoma fasciatum ( n  = 69) showed comparable low allozyme diversities ( H _e = 0·012 and 0·009–0·028, respectively), but contrasting PCR‐RFLP restriction site mitochondrial DNA diversities (three haplotypes: π = 0·034–0·092 and five haplotypes: π = 0·001–0·023, respectively) in the Rio Ichilo and Beni (Bolivia). Genetic homogeneity between samples was high for B. flavicans and lower for P. fasciatum . Based on mitochondrial diversity, both species probably experienced a historic population reduction but at different time scales.     

Evidence for independent origin of two spring‐spawning ciscoes (Salmoniformes: Coregonidae) in Germany

Combined analyses of mitochondrial DNA (mtDNA) and microsatellite loci were performed to assess the genetic differentiation of two spring‐spawning ciscoes from each other and from sympatric Coregonus albula in two German lakes. Polymorphism was screened at six microsatellite loci and mtDNA for a total of 247 and 94 ciscoes, respectively. Microsatellite data showed a weak differentiation between spring‐spawning Coregonus fontanae and sympatric C. albula in Lake Stechlin ( F _ST = 0–0·008), whereas a significant differentiation was observed between spring‐spawning Coregonus lucinensis and sympatric C. albula in Lake Breiter Luzin ( F _ST = 0·013–0·039). A more pronounced genetic difference was observed between both spring‐spawning species ( F _ST = 0·05–0·128). Shared mtDNA haplotypes among sympatric species within both Lake Stechlin and Lake Breiter Luzin were observed, whereas no haplotype was shared between C. fontanae and C. lucinensis . These results suggest an independent origin for spring‐spawning ciscoes in each lake. Evidence is also provided for mtDNA introgression of Coregonus sardinella into C. lucinensis and C. albula in Lake Breiter Luzin. Postglacially, this species or at least a population which showed mtDNA introgression has colonized the Baltic Sea basin up to the glacial margin that was located between Lakes Stechlin and Breiter Luzin.     

Community structure of an assemblage of tidepool fishes on a tropical eastern Pacific rocky shore, Colombia

The composition, abundance, species richness and diversity of a rocky intertidal fish assemblage in the central zone of the Pacific coast of Colombia were determined. From July to December 2002, 10 tidepools with volumes ranging from 0·087 to 1·350 m³ were surveyed. A total of 893 fishes belonging to 14 species and 12 families were found. The most abundant species were Bathygobius ramosus and Abudefduf concolor , representing 71% of all fishes collected. Bathy gobius ramosus , Malacoctenus zonifer and Gobiesox adustus were residents, Abudefduf concolor , Abudefduf troschelii , Microsphatodon bairdii , Chaenomugil proboscideus , Halichoeres aestuaricola and Echidna nocturna were transients, and Apogon dovii , Sargocentron suborbitalis , Cerdale sp, Rypticus nigripinnis and Ctenochaetus marginatus were considered as accidental visitors. The temporal and spatial variation of assemblage structure was tested. The fish assemblage structure did not differ between months and there was not a clear relationship between tidepool surface area and depth, and community variables. Diversity and species richness were negatively correlated with tidepool height. It is suggested that the tidepool assemblage was stable and resilient in time on short (annual) scales. The constancy in time and space could have been a consequence of eurytopic features of the organisms and the lack of drastic seasonal changes in the tropics.     

Growth variation in larval Makaira nigricans

The Atlantic blue marlin Makaira nigricans larvae were collected from Exuma Sound, Bahamas and the Straits of Florida over three summers (2000–2002). Sagittal otoliths were extracted and read under light microscopy to determine relationships between standard length ( L _S) and age for larvae from each year and location. Otolith growth trajectories were significantly different between locations: after the first 5–6 days of life, larvae from Exuma Sound grew significantly faster than larvae from the Straits of Florida. Exponential regression coefficients were similar among years for Exuma Sound larvae (mean instantaneous growth rate, G _L = 0·125), but differed between years for larvae from the Straits of Florida ( G _L = 0·086–0·089). Differences in larval growth rates between locations resulted in a 4–6 mm difference in L _S by day 15 of larval life. These differences in growth appeared to be unrelated to mean ambient water temperatures, and may have been caused by location‐specific differences in prey composition or availability. Alternatively, population‐specific differences in maternal condition may have contributed to these differences in early larval growth.     

Short-term movements of larval and juvenile lumpfish, Cyclopterus lumpus L., in tidepools

Larval and juvenile lumpfish, Cyclopterm lumpus L., which attach to marine algae and eelgrass using a ventral sucker, were marked and recaptured in a series of experiments along Schoodic Peninsula, Maine, U.S.A. A repeat-marking experiment in 1988 indicated immigration and, possibly, emigration in tidepools. Yet, some individuals remained in the same tidepool for up to 25 days. Experiments with marked groups of fish in 1988 and 1989 revealed significant short-term residence of individual lumpfish; up to 79% of marked fish were recaptured in the same tidepool 2 days later, even after major storms. A translocated group of 34 lumpfish left the new tidepool within 1 day, but two individuals returned to the home tidepool within 6 days. Extended inhabitance of tidepools by larval and juvenile lumpfish seems to be a function of availability of food and algal cover.     

Clones or clans: the genetic structure of a deep‐sea sponge,Aphrocallistes vastus,in unique sponge reefs of British Columbia,Canada

Understanding patterns of reproduction, dispersal and recruitment in deep‐sea communities is increasingly important with the need to manage resource extraction and conserve species diversity. Glass sponges are usually found in deep water (>1000 m) worldwide but form kilometre‐long reefs on the continental shelf of British Columbia and Alaska that are under threat from trawling and resource exploration. Due to their deep‐water habitat, larvae have not yet been found and the level of genetic connectivity between reefs and nonreef communities is unknown. The genetic structure of Aphrocallistes vastus, the primary reef‐building species in the Strait of Georgia (SoG) British Columbia, was studied using single nucleotide polymorphisms (SNPs). Pairwise comparisons of multilocus genotypes were used to assess whether sexual reproduction is common. Structure was examined 1) between individuals in reefs, 2) between reefs and 3) between sites in and outside the SoG. Sixty‐seven SNPs were genotyped in 91 samples from areas in and around the SoG, including four sponge reefs and nearby nonreef sites. The results show that sponge reefs are formed through sexual reproduction. Within a reef and across the SoG basin, the genetic distance between individuals does not vary with geographic distance (r = ?0.005 to 0.014), but populations within the SoG basin are genetically distinct from populations in Barkley Sound, on the west coast of Vancouver Island. Population structure was seen across all sample sites (global F_ST = 0.248), especially between SoG and non‐SoG locations (average pairwise F_ST = 0.251). Our results suggest that genetic mixing occurs across sponge reefs via larvae that disperse widely.     

Growth and reproduction of the tidepool sculpinOligocottus maculosus

Growth and reproduction of tidepool sculpins (Oligocottus maculosus) from three sites in Puget Sound, Washington State, USA were characterized. One site was a sandy, gently sloping beach, the second was an exposed rock headland with minimal algal cover, and the third was an exposed rock headland with numerous tidepools containing abundant algal cover. Length-weight relationships for sculpins did not differ significantly between sexes within sites. Population age structure, growth rate and recruitment varied among the three study sites using data pooled across both sexes. Young-of-the-year sculpins comprised 91% of the population at the exposed headland site with minimal algal cover but only 6% at the headland with abundant algal cover. Selective predation by great blue herons (Ardea herodias) upon tidepool sculpins larger than 45 mm total length assisted in the maintainance of these age structures. A maximum gonadosomatic index of 28.5 was calculated; this index correlated poorly with either age, length or somatic weight. Diameters of unshed ova from preserved tidepool sculpins sampled prior to spawning fell into three classes. Comparison of the mean egg size of each mode and the number of modes present in preserved sculpins with similar data from tidepool sculpins that spawned in the laboratory suggested that spawning occurred twice yearly from at least January through August.     

Sound production in two species of damselfishes (Pomacentridae): Plectroglyphidodon lacrymatus and Dascyllus aruanus

Agonistic sounds of two pomacentrid species, Plectroglyphidodon lacrymatus and Dascyllus aruanus , were recorded in captivity. Plectroglyphidodon lacrymatus produced trains of 2–5 pops, each composed of 18–25 cycles, with an average duration of 56 ms; most energy ranged from c. 100 to 1000 Hz. Dascyllus aruanus produced pops and chirps. Pops were generally composed of a single pulse, with 2–14 peaks and an average duration of 6·7 ms. Pops contained energy >4 kHz, and peak frequency ranged from 680 to 1300 Hz. Chirps consisted of trains of 12–42 short pulses of three to six cycles, with durations varying from 0·6 to 1·27 ms; peak frequency varied from 3400 to 4100 Hz. Sound production in P. lacrymatus suggested that pomacentrids are derived from an ancestral taxon capable of sound production and that this capacity is a synapomorphy for the family. Although in the Pomacentridae, pops are typically composed of a single pulse, which is longer and higher pitched than chirps composed of a series of shorter pulses, D. aruanus chirps were higher pitched than its pops. Thus, acoustic variation in the genus Dascyllus is probably not more restricted than in the Pomacentridae.     

Haematology and leucocyte morphology of wild caught Thunnus maccoyii

The haematology of wild southern bluefin tuna Thunnus maccoyii was described using blood samples collected from fish immediately after they were caught. Cytology and cytochemistry revealed that the blood in peripheral circulation is comprised of erythrocytes, reticulocytes, ghost cells, lymphocytes, thrombocytes, eosinophilic granulocytes, neutrophilic granulocytes and monocytes. Reference ranges established were 41·09–55·50% for haematocrit, 0·62–3·00% for leucocrit, 13·25–17·92 g dl⁻¹ for haemoglobin and 2·1–2·9 million erythrocytes μl⁻¹ for erythrocyte count. Differential cell counts showed 94·58 ± 2·15% erythrocytes, 3·99 ± 1·44% leucocytes and 1·43 ± 1·03% thrombocytes (mean ±  s . d .). Normal ranges for differential leucocyte counts were 0·00–5·45% for neutrophils, 0·69–12·06% for eosinophils, 0·00–5·03% for monocytes, 46·97–74·32% for lymphocytes and 14·47–43·92% for thrombocytes. Erythrocyte indices, leucocyte types and cytochemistry were comparable to other species of scombrids. Packed cell volume was sensitive to the physiological state of the fish and to sample handling technique.     

Phylogeography of the flathead mullet Mugil cephalus in the north-west Pacific as inferred from the mtDNA control region

The population genetic structure and historical demography of the flathead mullet Mugil cephalus were investigated using the mtDNA control region (CR) sequences (909–1015 bp) of 126 individuals collected from seven locations in the north-west Pacific between 2005 and 2007. Haplotype diversity ( h = 0·9333–1·000) and nucleotide diversity (π = 0·0046–0·1467) varied greatly among the sampling locations. Phylogenetic analysis of the CR sequences indicated that M. cephalus in the north-west Pacific belongs to two highly divergent lineages (lineages 1 and 2), with the inferred population structure being closely associated with the distribution of both lineages. Two populations were identified, one from the East China Sea and the other from the South China Sea. The former samples were obtained from Taiwan and Qingdao of north China and associated with lineage 1 haplotypes. The latter samples were collected from the Philippines, Pearl River of South China and two samples from Japan, all of which were associated with lineage 2. Japanese samples from Okinawa and Yokosuka had different degrees of mixing between lineages 1 and 2. Historical demographic variables in both populations indicated that Pleistocene glaciations had a strong impact on M. cephalus in the north-west Pacific, resulting in a recent demographic decline of the East China Sea population but in demographic equilibrium for the South China Sea population. Japan appears to be a contact zone between lineages 1 and 2, but it may also be indicative of coexistence between resident and migratory populations. Further global studies are required to clarify the taxonomic status of this cosmopolitan species.     

Residence and movement patterns of cownose rays Rhinoptera bonasus within a south-west Florida estuary

Between July 2003 and November 2004, 21 cownose rays Rhinoptera bonasus were tagged and tracked within Pine Island Sound estuary, Florida, using passive acoustic telemetry. Residence time of individuals ranged between 1 and 102 days. No relationship was detected between ray activity and tidal stage or time of day. Minimum convex polygons (MCP) and kernel utilization distributions (KUD) were calculated over several time frames to demonstrate the extent of an animal's home range and core areas of use. Total MCPs ranged between 0·81 and 71·78 km² (mean = 22·01 km²), with daily MCPs as large as 25·8 km². Total 95% KUDs ranged between 0·18 and 62·44 km² (mean = 22·63 km²), while total 50% KUDs were smaller, ranging from 0·09 to 9·68 km² (mean = 3·33 km²). Both MCP and KUD areas exhibited a positive relationship with residence time and R. bonasus size. As mobile, pelagic swimmers capable of traversing large distances, these data show that cownose rays travel extensively throughout this estuary, yet may remain within very small areas for extended periods.     

Top-down and bottom-up factors in tidepool communities

Recent studies suggest that nutrient variation influences rocky intertidal community structure, however empirical evidence is rare. In the Gulf of Maine, tidepools that occur on seagull feeding roosts are potentially subjected to regular nutrient loading from seagull guano. The results of a survey conducted on Swan's Island, ME show that roost tidepools have very low macroinvertebrate and macroalgal diversity as well as very high phytoplankton biomass compared to non-roost tidepools. An experiment presented here tested basic food chain hypotheses in tidepool communities. These basic food chain models predict that in a tidepool with one trophic level (phytoplankton only), phytoplankton biomass will increase when nutrients are enriched. In contrast, these models predict that in two trophic level tidepools (phytoplankton and mussels) herbivory will prevent an increase in phytoplankton biomass when nutrients are enriched. A short term 2×2 factorially designed field experiment was used to test this basic conceptual model using herbivory by mussels and enrichment with nitrogen as the main effects. The results of this investigation are consistent with the predictions of basic food chain models, and indicate that over the short time interval of a few days, herbivory by mussels is sufficient to maintain low phytoplankton levels following enrichment with nitrogen. Experimental enrichment with phosphorus in this study had no effect on phytoplankton biomass. The results of this study suggest that periodic pulses of nitrogen into tidepools will have little effect on phytoplankton biomass when mussels are present and that longer-term chronic nitrogen influxes may be driving the patterns of community structure in tidepools occurring on roosts.     

Y-STR diversity and sex-biased gene flow among Caribbean populations

In the present study, we report, for the first time, the allele and haplotype frequencies of 17 Y-STR (Y-filer) loci in the populations of Haiti, Jamaica and the Bahamas (Abaco, Eleuthera, Exuma, Grand Bahama, Long Island and New Providence). This investigation was undertaken to assess the paternal genetic structure of the abovementioned Caribbean islands. A total of 607 different haplotypes were identified among the 691 males examined, of which 537 (88.5%) were unique. Haplotype diversities (HD) ranged from 0.989 in Long Island to 1.000 in Grand Bahama, with limited haplotype sharing observed among these Caribbean collections. Discriminatory capacity (DC) values were also high, ranging from 79.1% to 100% in Long Island and Grand Bahama, respectively, illustrating the capacity of this set of markers to differentiate between patrilineal related individuals within each population. Phylogenetic comparison of the Bahamian, Haitian and Jamaican groups with available African, European, East Asian and Native American populations reveals strong genetic ties with the continental African collections, a finding that corroborates our earlier work using autosomal STR and Y-chromosome binary markers. In addition, various degrees of sex-biased gene flow exhibiting disproportionately higher European paternal (as compared to autosomal) influences were detected in all Caribbean islands genotyped except for Abaco and Eleuthera. We attribute the presence or absence of asymmetric gene flow to unique, island specific demographic events and family structures.     

Population structure and phylogeography of Aphyocypris kikuchii (Oshima) based on mitochondrial DNA variation

Aphyocypris kikuchii is a cyprinid species endemic to northern and eastern Taiwan and is the only primary freshwater fish native east of the Coastal Mountain Range. In total, 92 individuals of A. kikuchii from seven populations in three regions of the island were surveyed for mitochondrial DNA (mtDNA) variation. High haplotype diversity ( h = 0·989) and low nucleotide diversity ( π = 0·009) of mtDNA were detected. Negative values of Tajima's D and unimodal mismatch distributions probably reflect a history of recent demographic expansions from small populations. Three major haplotype clusters displayed geographically non-overlapping distributions, indicating a long-term isolation between regions. Hierarchical analysis of molecular variance showed significant genetic structuring among populations ( Φ _ST= 0·66). Significant haplotype heterogeneity was also detected among populations within regions ( Φ _SC= 0·41, P < 0·001) and among regions ( Φ _CT= 0·43, P < 0·05). Molecular clock estimates of coalescence in the three major mtDNA lineages indicated coalescence in the most recent common ancestor c. 0·11–0·39 million years ago. Haplotypes of cluster B nested as interior nodes in the haplotype network, indicating that migrations from Shueilian (SL) populations to the northern region (cluster A) and to the eastern region (cluster C) may have occurred independently. Lineages A and B + C should be managed as two distinct evolutionarily significant units, while the northern, SL and southern groups should be managed as separate management units.     

Heat resistance of Cronobacter species (Enterobacter sakazakii) in milk and special feeding formula

Aim:  To determine D - and z -values of Cronobacter species ( Enterobacter sakazakii ) in different reconstituted milk and special feeding formula and the effect of reconstitution of powdered milk and special feeding formula with hot water on the survival of the micro-organism.
Methods and Results:  Five Cronobacter species (four C. sakazakii isolates and C. muytjensii ) were heated in reconstituted milk or feeding formula pre-equilibrated at 52–58°C for various times or mixed with powdered milk or feeding formula prior to reconstitution with water at 60–100°C. The D -values of Cronobacter at 52–58°C were significantly higher in whole milk (22·10–0·68 min) than in low fat (15·87–0·62 min) or skim milk (15·30–0·51 min) and significantly higher in lactose-free formula (19·57–0·66 min) than in soy protein formula (17·22–0·63 min). The z -values of Cronobacter in reconstituted milk or feeding formula ranged from 4·01°C to 4·39°C. Water heated to ≥70°C and added to powdered milk and formula resulted in a > 4 log₁₀ reduction of Cronobacter .
Conclusions:  The heat resistance of Cronobacter should not allow the survival of the pathogen during normal pasteurization treatment. The use of hot water (≥70°C) during reconstitution appears to be an effective means to reduce the risk of Cronobacter in these products.
Significance and Impact of the Study:  This study supports existing data available to regulatory agencies and milk producers that recommended heat treatments are sufficient to substantially reduce risk from Cronobacter which may be present in these products.     

The metabolic rate of roach in relation to body size and temperature

Standard and routine metabolic rates of roach Rutilus rutilus for a wide size and temperature range (3–200 g, 5–23° C) were analysed by automated, computerized intermittent flow respirometry. The mass exponent b ranged from 0·68 to 0·82 for standard metabolism, and from 0·65 to 0·92 for routine metabolism depending on the experimental temperature. For routine metabolism b was lowest at 10° C. At both decreasing and increasing temperatures, b increased significantly. Roach were exponentially temperature-dependent for both metabolic levels. For roach <20 g, however, an asymptotic relationship was observed between temperature and routine metabolic rate. The 'flattening of the curve' in the latter case may be explained by reduced spontaneous activities at the lower threshold of the preferred temperature range.     

Multiple levels of allopatric divergence in the endemic Philippine fruit bat Haplonycteris fischeri (Pteropodidae)

As part of a larger comparative phylogeographical study of Philippine fruit bats, I used fragments of the mitochondrial genes cytochrome  b and ND2 to investigate phylogeography and diversification in Haplonycteris fischeri , a pteropodid bat endemic to the Philippines but widespread within the archipelago. Genetic diversity in H. fischeri was extremely high in these commonly studied genes, with 101 unique haplotypes in 123 sequenced individuals, although small, continuously isolated islands had less diversity than had large island complexes. Seven monophyletic groups and one paraphyletic group were restricted to individual islands, groups of islands, or parts of islands. Each Pleistocene island complex had a single resident monophyletic lineage; these five groups were separated by approximately 6–8% sequence divergence and apparently have been diverging for 4–6 Myr. Within island groups, monophyletic lineages on some individual islands suggest that current ocean channels have also been barriers to gene flow; in some cases, multiple allopatric clades were present on single islands. Basal divergence dates were estimated to be in the early Pliocene, and most diversification was apparently connected to the ongoing geological evolution of the Philippines. Geological history and current geography interact with ecology to cause substantial genetic differentiation within this primary forest-specialist species.  © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 88 , 329–349.     

Simultaneous Spawning of Six Species of Echinoderms in Barkley Sound,British Columbia

Summary

Six species of echinoderms were observed spawning (1 holothuroid, 1 echinoid, 4 asteroids) during a single 40 min dive to 10 to 18 m depth in Barkley Sound, Vancouver Island, on the afternoon of 9 August 1987, the day after the full moon. Most of the spawning animals were not close to conspecific individuals. None were observed spawning the following day. Published reports indicate that it is not uncommon for widely scattered individuals of echinoderms to broadcast spawn in the field. Fertilization success often may be low. Moreover, simultaneous spawning by different species, as we and others have observed, indicates that the incidence of hybridization (either lethal or viable) could be high and have important consequences to the biology of the species involved.     

Historical diversification of floodplain forest specialist species in the Amazon: a case study with two species of the avian genus Xiphorhynchus (Aves: Dendrocolaptidae)

Phylogeographical and population genetics methods are used to reconstruct the diversification history of two species of the genus Xiphorhynchus (Aves: Dendrocolaptidae) associated with seasonally flooded forest types in Amazonia. Sequences of the mitochondrial gene cytochrome b were assessed for 21 and 30 individuals, belonging to eight and ten populations, of Xiphorhynchus kienerii and Xiphorhynchus obsoletus , respectively. Uncorrected genetic distances among unique haplotypes recovered ranged only from 0.01% to 0.4% for both species. Over 90% of the genetic variation detected in both species was partitioned within populations, and therefore was not structured geographically. Mismatch distributions and values of Tajima's D -tests indicate that both X. kienerii and X. obsoletus have had small evolutionary effective population sizes, but experienced a recent demographic expansion. These demographic expansions are tentatively dated as occurring over the last 18 000 years BP, a time frame which coincides with the establishment of the early and mid-Holocene age floodplain forest in most of central and eastern Amazonia, following a period of increased river stages throughout the basin. Based on phylogenetic, phylogeographical, and populations genetics data obtained for X. kienerii and X. obsoletus , an evolutionary scenario is proposed to account for the historical diversification of floodplain specialist species in Amazonia.  © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 89 , 383–395.     

A new technique to gather 3‐D spatial information using a single camera

A new technique using a single camera and shadows to determine 3‐D spatial positions of fishes in the laboratory is described. The apparatus consisted of a large aquarium (2·0 × 1·5 × 0·4 m), a wide‐angle camera mounted above and two light sources to cast shadows to either side of the fish. Using image analysis and vector mathematics, aquarium objects were plotted within 1·5 cm of their actual location along the x ‐, y ‐ and z ‐axis. The technique was also successful in quantifying changes in 3‐D spatial pattern of juvenile fish, Atlantic cod Gadus morhua (7·4–8·6 cm standard length, L _S) and cohabitant piscivorous shorthorned sculpin Myoxocephalus scorpinus (12·0–25·8 cm L _S), at these same viewing fields. The new technique should have a wide application, largely because it is potentially less expensive, laborious and invasive than alternative methods for determining 3‐D positions of fishes.