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1.
Mitsuaria sp. strain H24L5A is a plant-associated bacterium with proven capacities to suppress plant pathogens. Here, we report the draft genome sequences and automatic annotation of H24L5A. Comparative genomic analysis indicates H24L5A's similarity to the Leptothrix and Methylibium species, as well as several genes potentially contributing to its biocontrol activities. 相似文献
2.
We sequenced the genome of the high-siderophore-yielding strain Pseudomonas sp. HYS and then analyzed its iron acquisition systems. The 5.6-Mb draft genome sequence has a special pattern of pyoverdine synthesis clusters and contains an hmuRSTUV heme uptake cluster, which has a homolog only in some strains of the order Enterobacteriales. 相似文献
3.
Brown SD Klingeman DM Lu TY Johnson CM Utturkar SM Land ML Schadt CW Doktycz MJ Pelletier DA 《Journal of bacteriology》2012,194(9):2383-2384
Rhizobium sp. strain PDO1-076 is a plant-associated bacterium isolated from Populus deltoides, and its draft genome sequence is reported. 相似文献
4.
Lin Y Fan H Hao X Johnstone L Hu Y Wei G Alwathnani HA Wang G Rensing C 《Journal of bacteriology》2012,194(1):199-200
We report the draft genome sequence of arsenite-oxidizing Halomonas sp. strain HAL1, isolated from the soil of a gold mine. Genes encoding proteins involved in arsenic resistance and transformation, phosphate utilization and uptake, and betaine biosynthesis were identified. Their identification might help in understanding how arsenic and phosphate metabolism are intertwined. 相似文献
5.
Serratia plymuthica strain PRI-2C is a rhizosphere bacterial strain with antagonistic activity against different plant pathogens. Here we present the 5.39-Mb (G+C content, 55.67%) draft genome sequence of S. plymuthica strain PRI-2C with the aim of providing insight into the genomic basis of its antagonistic activity. 相似文献
6.
San Martin-Uriz P Gomez MJ Arcas A Bargiela R Amils R 《Journal of bacteriology》2011,193(19):5585-5586
Acidiphilium sp. strain PM (DSM 24941) was isolated from Rio Tinto's acidic, heavy metal-rich waters. Voltammetry experiments revealed that this strain is capable of electricity production even under aerobic conditions. Here we report the draft genome sequence of Acidiphilium sp. PM and a preliminary genome analysis that reveals a versatile respiratory metabolism. 相似文献
7.
Thermus sp. strain CCB_US3_UF1, a thermophilic bacterium, has been isolated from a hot spring in Malaysia. Here, we present the complete genome sequence of Thermus sp. CCB_US3_UF1. 相似文献
8.
Jin HM Jeong H Moon EJ Math RK Lee K Kim HJ Jeon CO Oh TK Kim JF 《Journal of bacteriology》2011,193(16):4292-4293
Alteromonas sp. strain SN2, able to metabolize polycyclic aromatic hydrocarbons, was isolated from a crude oil-contaminated sea-tidal flat. Here we report the complete 4.97-Mb genome sequence and annotation of strain SN2. These will advance the understanding of strain SN2's adaptation to the sea-tidal flat ecosystem and its pollutant metabolic versatility. 相似文献
9.
Kim DH Jiang S Lee JH Cho YJ Chun J Choi SH Park HS Hur HG 《Journal of bacteriology》2011,193(18):5039-5040
The dissimilatory metal reducing bacterium Shewanella sp. strain HN-41 was first reported to produce novel photoactive As-S nanotubes via reduction of As(V) and S(2)O(3)(2-) under anaerobic conditions. Here we report the draft genome sequence and annotation of strain HN-41. 相似文献
10.
Park JY Han SH Lee JH Han YS Lee YS Rong X McSpadden Gardener BB Park HS Kim YC 《Journal of bacteriology》2011,193(23):6795-6796
Pseudomonas putida B001 is a rhizobacterium that was isolated on the basis of its abilities to grow under low-nutrient conditions and induce systemic resistance against bacterial, fungal, and viral diseases of plants. Here we report the draft genome sequence and automatic annotation of strain B001. Comparison of this sequence to the sequenced genome of P. putida KT2440 points to a subset of gene functions that may be related to the defense-inducing functions of B001. 相似文献
11.
We report the draft genome sequence of Halomonas sp. strain KM-1, which was isolated in Ikeda City, Osaka, Japan, and which produces the bioplastic poly(3-hydroxybutyrate). The total length of the assembled genome is 4,992,811 bp, and 4,220 coding sequences were predicted within the genome. Genes encoding proteins that are involved in the production and depolymerization of poly(3-hydroxybutyrate) were identified. The identification of these genes might be of use in the production of the bioplastic poly(3-hydroxybutyrate) and its monomer 3-hydroxybutyrate. 相似文献
12.
Lee J Shin SC Kim SJ Kim BK Hong SG Kim EH Park H Lee H 《Journal of bacteriology》2012,194(11):3010-3011
Sphingomonas sp. strain PAMC 26617 has been isolated from an Arctic lichen Umbilicaria sp. on the Svalbard Islands. Here we present the draft genome sequence of this strain, which represents a valuable resource for understanding the symbiotic mechanisms between endosymbiotic bacteria and lichens surviving in extreme environments. 相似文献
13.
Fan L Liu Y Li Z Baumann HI Kleinschmidt K Ye W Imhoff JF Kleine M Cai D 《Journal of bacteriology》2011,193(14):3691-3692
Streptomyces, a branch of aerobic Gram-positive bacteria, represents the largest genus of actinobacteria. The streptomycetes are characterized by a complex secondary metabolism and produce over two-thirds of the clinically used natural antibiotics today. Here we report the draft genome sequence of a Streptomyces strain, PP-C42, isolated from the marine environment. A subset of unique genes and gene clusters for diverse secondary metabolites as well as antimicrobial peptides could be identified from the genome, showing great promise as a source for novel bioactive compounds. 相似文献
14.
Strain HQM9, an aerobic, rod-shaped marine bacterium from red algae, can produce agarases and liquefy solid plating media efficiently when agar is used as a coagulant. Here we report the draft genome sequence and the initial findings from a preliminary analysis of strain HQM9, which should be a novel species of Flavobacteriaceae. 相似文献
15.
de Souza JA Tieppo E Magnani Gde S Alves LM Cardoso RL Cruz LM de Oliveira LF Raittz RT de Souza EM Pedrosa Fde O Lemos EG 《Journal of bacteriology》2012,194(13):3547-3548
The draft sequence of the genome of Bradyrhizobium elkanii 587 is presented. This was obtained using Illumina Next-Gen DNA sequencing combined with Sanger sequencing. Genes for the pathways involved in biological nitrogen fixation (the nif gene cluster), nod genes including nodABC, and genes for the type III protein secretion system (T3SS) are present. 相似文献
16.
Sarikhan S Azarbaijani R Yeganeh LP Fazeli AS Amoozegar MA Salekdeh GH 《Journal of bacteriology》2011,193(19):5580
The draft genome of the aerobic, Gram-positive, halophilic chemoorganotroph Nesterenkonia sp. strain F consists of a 2,812,133-bp chromosome. This study is the first to report the shotgun-sequenced draft genome of a member of the genus Nesterenkonia. 相似文献
17.
Klassen JL Adams SM Bramhacharya S Giles SS Goodwin LA Woyke T Currie CR 《Journal of bacteriology》2011,193(24):6999-7000
Streptomyces sp. strain Wigar10 was isolated from a surface-sterilized garlic bulb (Allium sativum var. Purple Stripe). Its genome encodes several novel secondary metabolite biosynthetic gene clusters and provides a genetic basis for further investigation of this strain's chemical biology and potential for interaction with its garlic host. 相似文献
18.
Woo PC Lau SK Liu B Cai JJ Chong KT Tse H Kao RY Chan CM Chow WN Yuen KY 《Eukaryotic cell》2011,10(12):1740-1741
Penicillium marneffei is the most important thermal dimorphic, pathogenic fungus endemic in China and Southeast Asia and is particularly important in HIV-positive patients. We report the 28,887,485-bp draft genome sequence of P. marneffei, which contains its complete mitochondrial genome, sexual cycle genes, a high diversity of Mp1p homologues, and polyketide synthase genes. 相似文献
19.
Su L Zhou T Zhou L Fang X Li T Wang J Guo Y Chang D Wang Y Li D Liu C 《Journal of bacteriology》2012,194(13):3549
Bacillus cereus is a prevalent, soil-dwelling, Gram-positive bacterium. Some strains are harmful to humans and cause food-borne illness, while other strains can be beneficial as probiotics for animals. To gain insight into the bacterial genetic determinants, we report the genome sequence of a strain, LCT-BC244, which was isolated from CGMCC 1.230. 相似文献
20.
Bi-Shuang Chen Linda G. Otten Verena Resch Gerard Muyzer Ulf Hanefeld 《Standards in genomic sciences》2013,9(1):175-184
Rhodococcus rhodochrous ATCC 17895 possesses an array of mono- and dioxygenases, as well as hydratases, which makes it an interesting organism for biocatalysis. R. rhodochrous is a Gram-positive aerobic bacterium with a rod-like morphology. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 6,869,887 bp long genome contains 6,609 protein-coding genes and 53 RNA genes. Based on small subunit rRNA analysis, the strain is more likely to be a strain of Rhodococcus erythropolis rather than Rhodococcus rhodochrous. 相似文献