Ecology and distribution of diatoms in Biscayne Bay,Florida (USA): Implications for bioassessment and paleoenvironmental studies

The spatial and temporal distribution of planktonic, sediment-associated and epiphytic diatoms among 58 sites in Biscayne Bay, Florida was examined in order to identify diatom taxa indicative of different salinity and water quality conditions, geographic locations and habitat types. Assessments were made in contrasting wet and dry seasons in order to develop robust assessment models for salinity and water quality for this region. We found that diatom assemblages differed between nearshore and offshore locations, especially during the wet season when salinity and nutrient gradients were steepest. In the dry season, habitat structure was primary determinant of diatom assemblage composition. Among a suite of physicochemical variables, water depth and sediment total phosphorus (STP) were most strongly associated with diatom assemblage composition in the dry season, while salinity and water total phosphorus (TP) were more important in the wet season. We used indicator species analysis (ISA) to identify taxa that were most abundant and frequent at nearshore and offshore locations, in planktonic, epiphytic and benthic habitats and in contrasting salinity and water quality regimes. Because surface water concentrations of salts, total phosphorus, nitrogen (TN) and organic carbon (TOC) are partly controlled by water management in this region, diatom-based models were produced to infer these variables in modern and retrospective assessments of management-driven changes. Weighted averaging (WA) and weighted averaging partial least squares (WA-PLS) regressions produced reliable estimates of salinity, TP, TN and TOC from diatoms (r² = 0.92, 0.77, 0.77 and 0.71, respectively). Because of their sensitivity to salinity, nutrient and TOC concentrations diatom assemblages should be useful in developing protective nutrient criteria for estuaries and coastal waters of Florida.     

Correlation of surface sediment diatoms with the present lake water pH in 28 Algoma lakes,Ontario, Canada

The surface sediment diatom analysis of 28 Algoma lakes (pH 4.40–8.13) indicates that even though each lake has a widely different aquatic environment and characteristic diatom assemblage, a definite relationship exists between the lake water pH and their diatom assemblages. In the acidic lakes acidobiontic and acidophilous diatom species predominate whereas in circumneutral and alkaline lakes circumneutral and alkaliphilous diatoms were most common. Cluster analysis of the pH indicator diatom assemblages grouped the study lakes into three distinct cluster groups. These groups also closely corresponded to lake water pH. On the basis of published ecological information as well as their presence in our study lakes, the pH indicator status of a number of diatom taxa have been discussed. A detailed listing of the diatom taxa identified and their pH indicator status is provided in order to facilitate their use in future diatom-inferred pH studies.     

Sedimentary diatom assemblages and their utility in computing diatom-inferred pH in Sudbury Ontario lakes

Surface sediment diatoms from 30 Sudbury lakes were analyzed to establish a relationship between diatoms and limnological characteristics of these lakes. Factor analysis of various chemical and physical variables suggested that most of the variance was associated with the pH, pH-metal, and conductivity factors. Factor analysis of common diatom taxa indicated that the distribution of most of these diatoms is closely related to lake water pH and/or pH related factors. Regression analysis of various pH indicator assemblages with measured lake water pH also demonstrated significant relationships. Among the transfer functions employed to compute diatom-inferred pH, multiple regressions using pH indicator assemblages proved to be the best. Using this method an accuracy of about 0.3 pH unit can be achieved, even for lakes which have received large trace metal inputs concurrent with increase in acidity. The presence of planktonic diatoms in acidic lakes suggests that the widely accepted hypothesis that planktonic diatoms are greatly reduced in waters at pH below 5.6 is not always true.     

DISTRIBUTION OF INTERTIDAL DIATOMS ASSOCIATED WITH SEDIMENTS IN YAQUINA ESTUARY,OREGON1,2

Sediment samples and environmental data were collected from November 1973 to August 1974 to analyze the distribution of sediment-associated diatom assemblages relative to vertical, horizontal, and seasonal gradients in Yaquina Estuary, Oregon. The distribution of diatoms was regulated primarily by mean salinity and characteristics of the sediment, i.e., mean sediment size and percentage of organic carbon. Prominent taxa in the river above Yaquina Bay exhibited overlapping distributions along the salinity gradient to a location in brackish water where the mean salinity was approximately 5%_o. At this salinity, a relatively sharp discontinuity in the diatom flora existed which appeared to represent the biochemical and biophysical mechanisms involved in the osmotic regulation of fresh- and brackish-water diatoms. Relatively large disparities m the structure of diatom assemblages were found within relatively small areas of Yaquina Bay. These differences were attributed to properties of the sediment. Differences in diatom assemblages relative to variations in light intensity, water temperature and exposure to intertidal emergence were not apparent from the analysis of field data.     

COASTAL DIATOM–ENVIRONMENT RELATIONSHIPS FROM THE GULF OF FINLAND,BALTIC SEA1

Eutrophication of the Baltic Sea has become a serious concern in recent decades. To provide a potential means for quality assessments of coastal waters in this area, we collected a data set of 49 embayments in the Gulf of Finland, and explored the relationship between surface sediment diatom assemblages and 15 environmental variables, with special emphasis on nutrients. Total dissolved nitrogen, total phosphorus, depth, and salinity all accounted for significant and independent fractions of variation in the diatom data and explained 34% of the total variation. There were clear changes in diatom assemblage structures along the nutrient gradients. Although these changes were gradual, we could identify a number of taxa that were more abundant in a particular nutrient environment. These taxa could be used as potential indicators of the quality of coastal waters in the Baltic Sea. Diatom assemblages that were least affected by nutrient enrichment included a variety of benthic species and a relatively high species richness. Small planktonic taxa such as Cyclotella atomus Hustedt, Cyclotella meneghiniana Kützing and Thalassiosira pseudonana Hasle and Heimdal were good indicators of highly elevated nutrient concentrations (>600 lg·L^?1 total dissolved nitrogen and 60 lg·L^?1 total phosphorus) together with low species richness. The first appearance of these small planktonic taxa in regular monitoring could be used as an early warning sign for deteriorating water quality. Diatoms could be applied to water quality classification and monitoring purposes in the coastal waters of the Baltic Sea area using techniques such as weighted‐averaging regression and calibration.     

Diatom surface sediment assemblages around Iceland and their relationships to oceanic environmental variables

Canonical correspondence analysis of diatoms from surface sediment samples and oceanographic environmental variables shows that summer and winter sea-surface temperatures, water depth and winter sea-surface salinity are the main environmental factors affecting diatom distribution around Iceland. Of these, summer sea-surface temperature is the most important. Five diatom assemblages are distinguished and the distribution of these assemblages is clearly correlated with oceanic current patterns in the region. The sea-ice diatom assemblage is limited to the area where the East Greenland Current (Polar Water) has its strongest influence, and the cold diatom assemblage is basically controlled by the less cold East Icelandic Current (Modified Polar Water). The mixing diatom assemblage results from the interaction between the cold East Greenland and East Icelandic Currents and the warm Irminger Current. The warm diatom assemblage is located in the area dominated by the Irminger Current and may be used as an indicator of warm-water masses (Atlantic Water). The coastal diatom assemblage is the only one strongly influenced by both water depth and summer water temperatures.     

BENTHIC DIATOM AUTECOLOGY AND INFERENCE MODEL DEVELOPMENT FROM THE CANADIAN HIGH ARCTIC ARCHIPELAGO1

Diatom assemblages were analyzed from 64 lakes and ponds from Alert, Ellesmere Island and Mould Bay, Prince Patrick Island in the Canadian High Arctic Archipelago. Diverse water chemistry conditions and diatom communities were present in these sites. Small benthic taxa typically dominated diatom communities; however, assemblages were markedly different between Alert and Mould Bay sites in response to disparate water chemistry characteristics in the two regions. The most abundant taxa belonged to the genera Navicula, Cymbella, Achnanthes, Nitzschia, and Pinnularia. Canonical correspondence analysis indicated that pH, specific conductivity, dissolved organic carbon, and total phosphorus were the most important limnological variables in determining species composition. Diatom inference models were developed for pH, specific conductivity, and dissolved organic carbon using weighted averaging and weighted averaging partial least squares techniques; these had root mean square error of prediction/r²_boot values of 0.40/0.77, 0.28/0.70, and 0.24/0.55, respectively. These models are applicable to sites with large ranges of taxonomic and limnological variation and will allow the reconstruction of past changes of climate‐related limnological parameters from biostratigraphic records in future paleolimnological studies.     

Diatom (Bacillariophyceae) assemblages in salt marshes of south‐central Chile: Relations with tidal inundation time and salinity

To reconstruct sea‐level history from changes in tidal environments using diatom assemblages, we need to better understand the relations among brackish diatom assemblages and changing environments along elevational gradients from diverse coastal sites. Our statistical analysis reveals relations between environmental variables and brackish benthic diatom assemblages in the little studied region of south‐central Chile. Along four transects across salt marshes at two sites, we identified 224 diatom taxa in 112 samples. Detrended canonical correspondence analysis showed that tidal exposure time index and salinity were appropriately regressed against the abundance of diatom species using unimodal‐based methods. Our tests of classical and inverse regressions of weighted average and weighted averaging partial least squares (WA‐PLS) showed that WA‐PLS resulted in the highest coefficient of determination and the lowest root‐mean square of the error of prediction. Our regression will be useful in reconstructing environmental variables from fossil diatom assemblages in Chile.     

Diatoms as a proxy in reconstructing the Holocene environmental changes in the south-western Baltic Sea: the lower Rega River Valley sedimentary record

This study focuses on diatom assemblages occurring in cores of Late-glacial and Holocene deposits retrieved from the mouth of the lower Rega River valley, of the southern coast of the Baltic Sea. Sediment samples from four cores were the subject of the present study. Diatom-inferred environmental characteristics, e.g., water level; water salinity (conductivity), trophic status and pH, within each core are presented. Diatom assemblage zones (DAZ) were distinguished, based on differences in the distribution of particular ecological groups. Each DAZ appears to be related to environmental changes during the deposition of a given sediment interval. The Late-glacial (Allerød) sediments originated in a shallow lake with increasing concentrations of solutes and nutrients. The Holocene record begins in the early Atlantic Chronozone and the diatoms point to weakly brackish-water sediments deposited in a shallow water environment. During the period of 8,500–5,800 cal year BP sedimentation took place in a shallow embayment and/or lagoon. From ca. 5,800 cal year BP onwards sedimentation took place in a peat bog environment alternating with Aeolian deposition. Changes in diatom community structure imply a close relationship with the climate-controlled eustatic rise of the ocean level and its consequence Littorina transgression. As with other southern Baltic Sea localities, brackish-water diatoms appear in the sediments, signaling the onset of marine transgression somewhat earlier than previously accepted. Differences and similarities in diatom assemblages and the palaeogeographic development of nearby regions within the Baltic Sea basin and lagoons (coastal areas) from different geographic regions, are also discussed.     

Biogeography and lake morphometry drive diatom and chironomid assemblages’ composition in lacustrine surface sediments of oceanic islands

Subfossil biotic assemblages in lakes’ surface sediments have been used to infer ecological conditions across environmental gradients. Local variables are usually the major drivers of assemblage composition, but in remote oceanic islands biogeographic filters may play a significant role. To assess the contribution of local and regional filters in the composition of subfossil diatom and chironomid assemblages in surface sediments, 41 lakes in Azores archipelago were studied and related to environmental variables. Ordination techniques were used to identify the forcing factors that best explain the composition of these assemblages. Both assemblages are influenced by multiple limnological variables (conductivity, pH and nutrients). However, diatom assemblages differed mainly in the proportion of planktonic versus benthic species along lakes’ depth gradient while chironomids differed significantly among islands but not among lake depths. Thus, biogeographic filters play an important role in shaping islands’ freshwater communities, particularly insect ones, more influenced by geographic variables. Results demonstrate the accuracy and potential of biotic remains in sediments for applied studies of lake ecology, trophic status, climatic trends and ecological reconstruction and evolution of lakes. In the Azores, the application of this information for the development of inference models is envisaged as a further step to accomplish these goals.     

Tracing lake trophic history with a chironomid–total phosphorus inference model

1. In the absence of historical water chemistry data, predictive biological indicator groups preserved in lake sediments can be employed to reconstruct the history of lake eutrophication. Diatoms are well established in this role, but to augment diatom‐based inferences of nutrient status we investigate the potential use of chironomid midges (Insecta: Chironomidae). 2. Canonical correspondence analysis (CCA) of modern chironomid assemblages in surface sediments from 44 lakes in the English Midlands and Wales, U.K., shows that five environmental variables (total phosphorus (TP), bottom dissolved oxygen, maximum lake depth, Secchi depth and surface water temperature) make a statistically significant (P < 0.05) contribution to explaining the variance in the chironomid data, of which TP makes the largest contribution (29%). 3. The relationship is used to develop a series of weighted averaging (WA) and partial least squares (PLS), (WA‐PLS) models to infer log₁₀TP. The models are evaluated by leave‐one‐out (jack‐knifing) cross‐validation. The simplest minimal adequate model is provided by WA with unweighted inverse deshrinking of root mean square error of prediction (RMSEP_jack=0.34 and r²_jack=0.60). 4. Using this model, the trophic history of Betton Pool, Shropshire, U.K., is reconstructed from the mid‐19th century to the present day and the results from the chironomid‐TP model are compared with inferences from a diatom‐TP model ( 13 ). Both reconstructions suggest that there was a gradual rise in TP since 1850 AD until about 1974, followed by a more pronounced and rapid increase that has continued until the present. Inferred TP values from the WA chironomid inference model agree with diatom‐inferred values. 5. The study demonstrates that fossil chironomid assemblages can be used to investigate quantitatively the trophic history of lakes.     

Some factors affecting distribution of diatom assemblages in Pyrenean springs

SUMMARY.

• 1 The composition and abundance of diatom assemblages were studied together with physiographical and physicochemical variables in twenty-eight springs in the Central Pyrenees during the period 1987–88.
• 2 Characteristic groupings of diatom taxa are revealed by Principal Components Analysis. One group, made up of assemblages of the taxa Navicula cincta, Caloncis spp. and Niizschia elliptica, is characteristic of springs with waters of high ionic strength. Certain diatom taxa are characteristic of hard water springs, either in quiet waters (Denticula tenuis, Achnanthes minutissima, Eunotia spp.) or fast flowing ones (Fragilaria spp., Diatoma hiemale). Other taxa are representative of relatively quiet, softwater springs: Anomoeoneis bracfiysira, Tabellaria flocculosa, Aulacoseira distans and Fragilaria vaucheriae.
• 3 Five different spring types were identified, with respect to diatom assemblages, using discriminant analysis. The first consisted of high mountain springs with cold, fast waters and low ionic strength. The second group, distributed throughout the Pyrenees, had similar environmental characteristics to the first group but with intermediate water velocity and slightly higher mineral content. The third contained springs in calcareous regions of the Pyrenees, mainly slow-flowing and with hard waters. The fourth was composed of softwater springs, whilst the fifth consisted of two springs which were subject to stressful conditions (limitation of light, abundance of nitrates or high salinity).
• 4 Ionic strength and current velocity appeared to be the dominant environmental factors affecting diatom distribution in Pyrenean springs. These factors also seem to determine diatom communities in some other geographical areas. In some springs, however, peculiar environmental factors (dim light, salinity, and high temperature) affect the structure of diatom assemblages.

     

Multivariate analysis of diatoms and water chemistry in Bolivian saline lakes

Diatom assemblages are described from surface sediments in thirteen salt lakes located in the southern Bolivian Altiplano. Factor analysis of correspondences and cluster analysis are used to classify the diatom assemblages. New methods are proposed to establish the qualitative and quantitative relationships between diatom floras and ecological parameters. Diatom assemblages are linked more to the ionic elements than to the salinity, pH, depth, temperature or elevation. Environmental variables are divided into three modalities which allow considerations of many different variables not under the same units.     

Regional distribution of diatom assemblages in the headwater streams of Luxembourg

The aim of this study was to determine the influence of environmental variables on the structure of benthic diatom assemblages, and to propose type assemblages of diatoms characterizing unpolluted headwater streams of Luxembourg. A total of 289 diatom samples were collected in the headwater streams of Luxembourg. At each sampling site, physical and chemical variables were also measured. The relationships between environmental variables and the distribution of the taxa were estimated using univariate and multivariate statistical analyses. On the basis of geology and stream water chemistry, Luxembourg could be separated in two regions. The streams in the schistose northern part of Luxembourg presented a low carbonate hardness (median 3.5° F); the streams in the southern part of Luxembourg presented a high carbonate hardness (median 21.8° F) notably connected to the presence of sandstone and limestone substrata. A Twinspan classification carried out on diatom assemblages defined two groups of samples corresponding to these two regions. The carbonate hardness that is related to the nature of the geological substratum appeared to be the major structuring variable for the assemblage composition. Anthropogenic pollution was a secondary structuring variable for diatom assemblages since each group could be subdivided in subgroups presenting statistically different nutrient and organic matter concentrations. The diatom assemblages of these subgroups were characterised by differences of saprobic and trophic preferences. On the basis of these results, two type assemblages of diatoms are proposed for the unpolluted headwater streams in the two regions of Luxembourg. The presence of these different type assemblages in Luxembourg shows the necessity to adapt diatom bioindication to the different regions of the country.     

Diatom assemblages in sediments of Lake Juusa, Southern Estonia with an assessment of their habitat

Diatom analysis of surface sediments and two sediment cores from different sedimentation areas of a small closed lake was undertaken with the aim of acquiring knowledge on the dependence of the distribution of diatom assemblages on lake bathymetry. Lake Juusa was selected for the study because we have for this lake a large data set about the lithological composition of sediments and macrofossil and cladoceran records for the Holocene. A high carbonate content (20–60%) in the sediment sequence indicates high carbonacity and relatively stable pH values during the Holocene. On the basis of comprehensive analysis, abrupt water-level fluctuations and changes in the trophic status were established. Results of this study showed that the fluctuations of the water-level were the leading factor determining the habitats of diatom assemblages in the lake. In the surface sediment samples planktonic species such as Cyclotella spp., Stephanodiscus spp. and Aulacoseira spp. had a depth optimum at 3–4 m and the most abundant periphytic taxa were distributed mostly at depths shallower than 3.5 m. The same regularity was established in sediment cores where a good correlation between planktonic species and lake water depth was found in sediments accumulated at water depths >4 m. Lake Juusa appears to be a proper site for detailed environmental reconstructions over the Holocene, and the results will give us a good opportunity to analyse the history of water-level fluctuations in other small Estonian lakes. Electronic Supplementary Material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: K. Martens     

The Trophic Index of Macrophytes (TIM) – a New Tool for Indicating the Trophic State of Running Waters

In running waters, apart from structural degradation, nutrient input becomes increasingly important. To investigate the indicator values of as many species of submerged macrophytes as possible numerous samples of the sediment within macrophyte stands and the overlying water were taken in running waters throughout Bavaria, Germany. To develop the Trophic Index of Macrophytes (TIM), the concentrations of soluble reactive phosphorus of both the water body and the sediment pore water were used. Based on a weighted sum of the SRP‐concentrations of the water body and the sediment pore water, indicator values were determined for a total of 49 species of submerged macrophytes. A detailed method is described on how and depending on which preconditions the trophic state of running waters can be determined by the TIM. An example of the TIM in the stream Rotbach is given. It shows that the TIM is a useful means to detect differences in the phosphorus loading of running waters.     

USING EPILITHIC ALGAL COMMUNITIES TO ASSESS TROPHIC STATUS IN IRISH LAKES1

Relationships between taxonomic composition of shallow epilithic algal communities and nine environmental variables in 32 lakes of different trophic states in Ireland were explored using gradient analysis. A canonical correspondence analysis using four representative environmental variables, alkalinity (correlated with pH and conductivity), maximum phytoplankton chl a (CHL_max) (correlated with total P, total N, and chl), turbidity, and water color explained 21% of the variance in taxa distributions. The first two axes were significant and accounted for 77% of the variance in the periphyton–environmental relationship. The first axis was strongly related to alkalinity and color, which reflected geology and land use in the watersheds. The second axis was most correlated with CHL_max, and separation of lakes corresponded to their Organization for Economic Cooperation and Development (OECD) trophic classification based on water chemistry. Eutrophic lakes were characterized by cyanobacteria taxa and Stigeoclonium sp. Diatoms and desmids were generally more abundant in oligotrophic and mesotrophic lakes. Values for diatom trophic indices were poor indicators of trophic state. Weighted averaging regression and calibration techniques were used to develop transfer functions between 84 taxa and total P, total N, and CHL_max. The total P inference model predicted OECD trophic classification correctly for 84% of the lakes. Values for taxa preferences resulting from such models can provide the foundation for biomonitoring schemes using extant periphyton communities. The turnover time of periphyton taxa should integrate changes in environmental conditions at a temporal scale intermediate to surface‐sediment fossil diatom assemblages and water column variables, which may be more appropriate for detecting annual changes.     

RELATIONSHIPS BETWEEN LITTORAL DIATOMS AND THEIR CHEMICAL ENVIRONMENT IN NORTHEASTERN GERMAN LAKES AND RIVERS1

We explored statistical relationships between the composition of littoral diatom assemblages and 21 chemical and physical environmental variables in 69 lakes and 15 river sites in the lowland of northeastern Germany. Canonical correspondence analysis with single treatment and with forward selection of environmental variables was used to detect 11 important ecological variables (dissolved inorganic carbon [DIC], Na ⁺ , total phosphorus [TP], dissolved organic carbon [DOC], total nitrogen [TN], pH, oxygen saturation, dissolved iron, SO₄^{2 ?} , NH₄ ⁺ , soluble reactive silicium) and maximum water depth or Ca^{2 +} or soluble reactive phosphorus that most independently explain major proportions of the total diatom variance among the habitats. Monte Carlo permutation tests showed that each contributed a significant additional proportion (P < 0.05) of the variance in species composition. Together, these 11 most important environmental variables explained 34% of the total variance in species composition among the sites and captured 73% of the explained variance from the full 21 parameters model. Weighted‐averaging regression and calibration of 304 indicator taxa with tolerance down‐weighting and classic deshrinking was used to develop transfer functions between littoral diatoms and DIC, pH, TP, TN, and Cl ^? . The DOC:TP ratio was introduced and a weighted‐averaging model was developed to infer allochthonous DOC effects in freshwater ecosystems. This diatom‐DOC/TP model was significant (P < 0.001) and explained 7.6% of the total diatom variance among the sites, surpassing the inferential power of the diatom‐TP‐transfer function (7.3% explained variance). The root‐mean‐square errors of prediction of the models were estimated by jack‐knifing and were comparable with published data sets from surface sediment diatom samples. The data set of littoral diatoms and environmental variables allows use of the diatom‐environmental transfer functions in biomonitoring and paleolimnological approaches across a broad array of natural water resources (such as floodplains, flushed lakes, estuaries, shallow lakes) in the central European lowland ecoregion.