Short-term influence of recolonisation by the polycheate worm [2pt] Nereis succinea on oxygen and nitrogen fluxes and [2pt] denitrification: a microcosm simulation

The short-term effects of sediment recolonisation by Nereis succinea on sediment-water column fluxes of oxygen and dissolved inorganic nitrogen, and rates of denitrification, were studied in microcosms of homogenised, sieved sediments. The added worms enhanced oxygen uptake by the sediments, due to the increased surface area provided by the burrow walls and the degree of stimulation was stable with time. Similarly, ammonium fluxes to the water column were stimulated by N. succinea, but declined over the 3 day incubation in all microcosms including the controls. Nitrate fluxes were generally greater in the faunated microcosms, but highly variable with time. Denitrification rates were positively stimulated by N. succinea populations, denitrification of water column nitrate was stimulated 10-fold in comparison to denitrification coupled to nitrification in the sediments. Rates of denitrification of water column nitrate were not significantly different from rates in undisturbed sediment cores with similar densities of N. succinea, whereas rates of coupled nitrification–denitrification were 3-fold lower in the experimental set-up. These results may reflect the relative growth rates of nitrifying and denitrifying bacteria, which allow more rapid colonisation of new burrow surfaces by denitrifier compared to nitrifier populations. The data indicate that recolonisation by burrowing macrofauna of the highly reduced sediments of the Sacca di Goro, Lagoon, Italy, following the annual dystrophic crisis, may play a significant role in the reoxidation and detoxification of the sediments. The increased rates of denitrification associated with the worm burrows, may promote nitrogen losses, but due to the low capacity of nitrifying bacteria to colonise the new burrow structures, these losses would be highly dependent upon water column nitrate concentrations.     

Vertical distribution of nitrite reductase genes (nir S) in continental margin sediments of the Gulf of Mexico

Marine sediments account for up to 66% of the loss of nitrogen load to coastal areas. Sedimentary denitrification is the main sink for fixed nitrogen in the global nitrogen budget, and thus it is important to understand the structure and composition of denitrifying communities. To understand the structure and composition of denitrifying communities, the diversity of nitrite reductase (nirS) genes from sediments along the Gulf of Mexico was examined using a PCR-based cloning approach. Sediments were collected at three different depths (0-0.5, 4-5 and 19-21 cm). Geochemical analysis revealed decreasing nitrate and oxygen concentrations with increasing sediment depth. This trend coincided with the decrease in diversity of denitrifying bacteria. LIBSHUFF analysis indicated that the clone library in the shallowest sediment (depth, 0-0.5 cm) was significantly different from that in the deepest sediment (depth, 19-21 cm), and that the deeper sediments (depths of 4-5 and 19-21 cm) were significantly similar. Community structural shifts were evident between the shallowest (oxic zone) and deepest (anoxic zone) sediments. Community changes within the deepest sediments were more subtle, with the presence of different nirS clone sequences gradually becoming dominant or, alternatively, decreasing with depth. The changes in community structure at this depth are possibly driven by nutrient availability, with lower quality sources of carbon and energy leading to the disappearance of nirS sequences common in the top layer. The majority of recovered nirS sequences were phylogenetically divergent relative to known denitrifying bacteria in the database.     

Response of denitrification rate associated with wetting and drying cycles in a littoral wetland area of Lake Biwa,Japan

To clarify the relationship between denitrification activity and dry–wet levels in the littoral wetland sediments of Lake Biwa, Japan, denitrification rates and their regulating parameters (degree of dryness, redox potential, nitrate concentration) were measured on different moisture sediments. Redox potential in sediments was higher in the exposed region in contact with atmosphere than the flooded region covered with water. The nitrate concentration in interstitial waters was undetectable in the flooded region. On the other hand, concentration in the exposed region increased with increase in the degree of sediment dryness. The denitrification rate ranged from <0.001 to 0.88 μg N cm⁻³ h⁻¹ in the exposed region and increased with the increase in the degree of dryness. In the flooded region, on the other hand, no detectable rate (<0.001 μg N cm⁻³ h⁻¹) was observed. This indicates that the rates in the exposed region were mainly influenced by nitrate concentration in the interstitial waters accumulated by desiccation of sediments, whereas rates in the flooded region were strongly limited by no accumulation of nitrate in the anaerobic conditions. The potential denitrification rate, under the application condition of nitrate, ranged from 0.13 to 0.26 μg N cm⁻³ h⁻¹ in the flooded region and from 0.77 to 1.5 μg N cm⁻³ h⁻¹ in the exposed region. The potential rates in the flooded region had a tendency to be lower than those in the exposed region, implying that the number of denitrifying bacteria in the flooded region was low due to inactivation of aerobic respiration and denitrification in the denitrifying bacteria community. Kinetic parameters, maximum rate (V _max) and half-saturation constant (K _s) for denitrification were calculated on the experimental procedures of the wetting–drying cycles of sediments. Both parameters decreased by the wetting treatment and increased by the drying treatment. The fluctuation of V _max values with wetting–drying cycles indicated that the number of denitrifying bacteria was influenced by aerobic respiration and denitrification in the denitrifying bacteria community similar to the potential rates, and denitrifying enzyme was induced by the nitrate supplied by nitrification accelerated through the drying process. On the other hand, the fluctuation of K _s values implied that members of denitrifying bacteria were shifted to members of high nitrate affinity by wetting treatment and of low nitrate affinity by drying treatment.     

不同季节艾比湖湿地盐角草根际nirS-型与nirK-型反硝化细菌群落组成分析

旨在了解艾比湖湿地盐生植物盐角草根际与非根际中不同类型反硝化细菌的分布及其随季节变化情况,为温带干旱地区荒漠盐化生态系统的代表-艾比湖湿地在生态植被恢复过程中,由微生物推动的土壤氮素循环过程提供数据支撑。采集了艾比湖湿地夏、秋、春三个季节的盐角草根际和非根际土壤样本,通过高通量测序技术,比较分析了nirS-型和nirK-型两种类型的反硝化细菌的多样性和群落结构特点;利用RDA (redundancy analysis)探究了土壤理化因素对反硝化细菌多样性及群落结构的影响。艾比湖湿地盐角草根际与非根际中,nirS-型和nirK-型反硝化细菌多样性最高的为秋季根际土壤样本;各土壤样本中的反硝化细菌多样性均呈现根际>非根际。盐角草各土壤样本中的nirS-型反硝化细菌在门分类水平上隶属于变形菌门(Proteobacteria),厚壁菌门(Firmicutes)和放线菌门(Actinobacteria),而nirK-型反硝化细菌在门水平上分类仅包括了Proteobacteria和Firmicutes。Proteobacteria在各土壤样本中的占比均较高;其中Gamma-Proteobacteria的盐单胞菌属(Halomonas)和假单胞菌属(Pseudomonas)是各土壤样本所共有的nirS-型反硝化菌的优势菌属,但它们在每个土壤样本中的相对丰度各有差异。Alpha-Proteobacteria的根瘤菌属(Rhizobium)是盐角草各土壤样本中较为广泛存在的nirK-型反硝化细菌。艾比湖湿地盐角草各土壤样本中的反硝化细菌群落结构存在着一定的差异。RDA结果显示含水量、有机质、全氮和铵态氮等对各土壤样本中的nirS-型反硝化细菌的多样性影响较大,含水量、有机质、全氮、碱解氮等是nirK-型反硝化细菌多样性的主要影响因素。土壤电导率、全磷、全钾、全氮和碱解氮协同影响nirS-型反硝化细菌的群落结构,有机质、速效钾、速效磷、pH和硝态氮是nirK-型反硝化细菌群落结构组成的主要影响因素。艾比湖湿地反硝化细菌呈现季节性变化,nirS-型和nirK-型反硝化细菌以不同的主要菌属,共同推进湿地反硝化作用。而对于湿地生态系统的保护,则需要进行长期而广泛的土壤状态评估和土壤反硝化微生物菌群的动态监测。     

WAX AND WANE OF MICROCYSTIS (CYANOPHYCEAE) AND MICROCYSTINS IN LAKE SEDIMENTS: A CASE STUDY IN QUITZDORF RESERVOIR (GERMANY)1

Benthic stages of the annual life cycle of the meroplanktonic cyanobacterium Microcystis spp. in relation to microcystin (MCYST) dynamics in sediments of a shallow lake (Quitzdorf Reservoir, Germany) were investigated. Based on changes in the absolute abundance of benthic Microcystis, the annual life cycle was subdivided into four phenological stages: reinvasion, pelagic growth, sedimentation, and overwintering. Habitat‐coupling processes, such as reinvasion of the pelagic zone in spring as well as autumnal sedimentation, were particularly triggered by changes in water temperature. During reinvasion substantial losses of Microcystis were detected. Only a minor part of benthic Microcystis (about 3%) formed the inoculum for pelagic growth. Between 65% and 85% of the benthic Microcystis stock disappeared during the reinvasion phase. Because these colonies were neither detected within the sediments nor in the pelagic inoculum, it was concluded that they were subjected to decay. The occurrence of extracellular MCYSTs in the pelagic zone during this period, which cannot solely originate from the pelagic Microcystis population, supports this conclusion. Dynamics of benthic Microcystis and MCYSTs were characterized by almost identical successions with a decrease during reinvasion, an increase during sedimentation, and remarkable invariability throughout pelagic growth and overwintering. It can be deduced that MCYSTs are preserved within benthic resting stages of Microcystis because they could play a role during overwintering or reinvasion.     

Rhodopseudomonas sphaeroides forma sp. denitrificans,a denitrifying strain as a subspecies of Rhodopseudomonas sphaeroides

From polluted water of a lagoon pond a new type of denitrifying photosynthetic purple bacteria was isolated. With respect to morphology, fine structure, photopigments, requirement for growth factors, the range of utilization of organic substrates for phototrophic growth and DNA base ratio, the denitrifying strains show the closest resemblance to Rhodopseudomonas sphaeroides and were therefore described as a subspecies named R. sphaeroides forma sp. denitrificans. The new isolates grow well with nitrate anaerobically in the dark accompanying the evolution of nitrogen gas. They cannot assimilate nitrate as the nitrogen source for growth.     

Nitrogen source effects on the denitrifying anaerobic methane oxidation culture and anaerobic ammonium oxidation bacteria enrichment process

The co-culture system of denitrifying anaerobic methane oxidation (DAMO) and anaerobic ammonium oxidation (Anammox) has a potential application in wastewater treatment plant. This study explored the effects of permutation and combination of nitrate, nitrite, and ammonium on the culture enrichment from freshwater sediments. The co-existence of NO₃ ⁻, NO₂ ⁻, and NH₄ ⁺ shortened the enrichment time from 75 to 30 days and achieved a total nitrogen removal rate of 106.5 mg/L/day on day 132. Even though ammonium addition led to Anammox bacteria increase and a higher nitrogen removal rate, DAMO bacteria still dominated in different reactors with the highest proportion of 64.7% and the maximum abundance was 3.07 ± 0.25 × 10⁸ copies/L (increased by five orders of magnitude) in the nitrite reactor. DAMO bacteria showed greater diversity in the nitrate reactor, and one was similar to M. oxyfera; DAMO bacteria in the nitrite reactor were relatively unified and similar to M. sinica. Interestingly, no DAMO archaea were found in the nitrate reactor. This study will improve the understanding of the impact of nitrogen source on DAMO and Anammox co-culture enrichment.

     

Nitrate Accumulation in Aerobic Hypolimnia: Relative Importance of Benthic and Planktonic Nitrifiers in an Oligotrophic Lake

Both nitrate and nitrous oxide accumulate in the hypolimnion of the oligotrophic Lake Taupo, New Zealand, throughout stratification. The two forms of oxidized nitrogen increase in concentration with increasing depth toward the sediments, where the dissolved concentrations of reduced nitrogen are two orders of magnitude higher than concentrations in the overlying water. Nitrification rates were measured by dark [¹⁴C]CO₂ assays with and without the inhibitor nitrapyrin. The fastest rates were recorded for planktonic nitrifiers in the epilimnion and benthic species in the surficial 2.5 mm of the sediments. Nitrifying bacteria were least active in the deep hypolimnion. Deepwater accumulation of NO₃⁻ in Lake Taupo must therefore be a product of benthic rather than planktonic nitrification.     

Modeling eutrophication and oligotrophication of shallow-water marine systems: the importance of sediments under stratified and well-mixed conditions

A one-dimensional model that couples water-column physics with pelagic and benthic biogeochemistry in a 50-m-deep water column is used to demonstrate the importance of the sediment in the functioning of shallow systems, the eutrophication status of the system, and the system’s resilience to oligotrophication. Two physical scenarios, a well-mixed and a stratified water column, are considered and both are run along a gradient of increasing initial pelagic-dissolved inorganic nitrogen (DIN) concentration. Where the mixed layer extends to the bottom, more nutrients and less light are available for growth. Under low to moderately eutrophic conditions (pelagic DIN <30 mmol m⁻³), this leads to higher productivity in well-mixed waters, while the stratified system is more productive under highly eutrophic conditions. Under stratification, the build-up of nitrate and depletion of oxygen below the mixed layer does not notably change the functioning of the sediment as a sink for reactive nitrogen. In sediments underlying well-mixed waters, sedimentary denitrification, fueled mainly by in situ nitrification, is slightly more important (8–15% of total benthic mineralization) than under stratified waters (7–20%), where the influx of bottom-water nitrate is the most important nitrate source. As a consequence of this less efficient removal of reactive nitrogen, the winter DIN concentrations are higher in the stratified scenario. The model is used to estimate the long-term benefits of nutrient reduction scenarios and the timeframe under which the new steady-state condition is approached. It is shown that a 50% reduction in external nitrogen inputs ultimately results in a reduction of 60–70% of the original pelagic DIN concentration. However, as the efflux of nitrogen from the sediment compensates part of the losses in the water column, system oligotrophication is a slow process: after 20 years of reduced inputs, the pelagic DIN concentrations still remain 2.7 mmol m⁻³ (mixed) and 3.9 mmol m⁻³ (stratified) above the ultimate DIN concentrations. Guest editors: J. H. Andersen & D. J. Conley Eutrophication in Coastal Ecosystems: Selected papers from the Second International Symposium on Research and Management of Eutrophication in Coastal Ecosystems, 20–23 June 2006, Nyborg, Denmark     

深松与包膜尿素对玉米田土壤氮素转化及利用的影响

耕作方式和氮肥施用是影响土壤中氮肥转化、利用效率和作物产量的重要因素。通过夏玉米田的2a(2011—2012)定位试验,研究了两种耕作方式(深松、旋耕)配合不同尿素类型(包膜尿素、普通尿素)的施用对玉米田土壤硝态氮和铵态氮含量、脲酶活性、硝化细菌和反硝化细菌数量、玉米产量以及氮肥农学效率的影响。研究结果表明:相同耕作方式下,包膜尿素处理土壤中脲酶活性较稳定,且增加了旱田土壤亚硝酸细菌数量而降低了反硝化细菌数量,有利于土壤硝态氮含量的提高,尤其是作物生长的中后期;包膜尿素处理的产量比普通尿素提高7.25%—10.82%,同时提高氮肥农学效率。深松处理增加了土壤中的反硝化细菌数量,配合施用包膜尿素进一步提高了土壤脲酶活性,增加了亚硝酸细菌数量;旋耕与包膜尿素配合施用在一段时期内能显著增加土壤硝态氮含量,减少反硝化细菌数量。深松配合包膜尿素处理能够显著的增加玉米产量,2a分别比旋耕配合包膜尿素增加1.41%和10.62%。因此,深松措施配合施用包膜尿素能够增强土壤脲酶活性,增加亚硝酸细菌数量,提高氮素转化速率,增加作物产量和氮肥农学效率,其稳产效果在干旱年份尤为显著。     

粉粒氨氮和水分影响浮霉菌门群落的空间分化

【背景】来自浮霉菌门(Planctomycetes)的厌氧氨氧化菌是高氨污染系统安全脱氮的生态友好型微生物,但关于特定生态梯度下Planctomycetes群落结构功能的空间分化以及驱动分化的主要环境因子等问题尚未引起关注。【目的】阐明Planctomycetes群落结构空间分化及影响其分化的主要环境因子。【方法】运用16S rRNA基因高通量测序手段检测温带半干旱区河流系统砂质及粉质沉积物、粉砂质及粉质土壤Planctomycetes群落结构的空间分布变化,统计学方法分析粉粒等理化因子对Planctomycetes群落结构功能分化的影响。【结果】OM190_ub_oo. o1种群主要分布在寡营养的砂质沉积物中,仅由砂粒正向驱动;OM190_ooo. o2和SM1A02. ub5种群主要分布在中营养的粉砂质土壤中,由水分和pH等正向驱动;AKYG587.ub3、Pla4_lineage_oo...     

Indigenous Sediment Microbial Activity in Response to Nutrient Enrichment and Plant Growth Following a Controlled Oil Spill on a Freshwater Wetland

The population density and activity of a microbial community associated with the sediment and rhizosphere of an intertidal freshwater wetland dominated by Scirpus pungens was monitored before and following the application of weathered Mesa light crude oil and fertilizers. The influence of nutrient enrichment (fertilizers) and plant growth on oil degradation rates was determined from the resulting data. The study plots (four blocks of replicates) were subjected to five treatments: oil only (natural attenuation); oil plus ammonium nitrate and phosphate, with regular cropping of the plants; oil plus ammonium nitrate and phosphate; oil plus sodium nitrate and phosphate; no oil, ammonium nitrate and phosphate. The plots were regularly monitored in the field for gas production (carbon dioxide and nitrous oxide), and samples were collected for laboratory analysis of denitrification activity, aliphatic and aromatic hydrocarbon degradation activity, and total heteroptrophic bacteria. The viable bacterial population density increased during the first 4 weeks in oiled and unoiled experimental plots that were fertilized. In contrast, population densities in untreated areas remained relatively unchanged throughout the monitoring period. The microbial population demonstrated a rapid and sustained increase in naphthalene mineralization activity in plots that were both fertilized and oiled. Hexadecane mineralization activity increased in response to fertilizer application, with ammonium nitrate causing a larger increase than sodium nitrate. A very significant difference observed in the mineralization of hexadecane was that the surface sediments were much more active than the subsurface sediments. This difference became even more pronounced in the second year of monitoring, even though the treatment regime had been discontinued. This compartmentalization of mineralization activity was not observed for naphthalene. Following fertilizer application, field and laboratory evaluation of nitrogen metabolism in the sediments indicated significant denitrification activity that was not adversely affected by oiling. The results demonstrated that the application of fertilizers stimulated the activities of indigenous hydrocarbon-degrading and denitrifying bacteria, and the presence of oil either enhanced or had no detrimental effect on these activities. As a remediation strategy, the application of fertilizers to a wetland shoreline following an oil spill would promote the growth of indigenous plants and their associated microbial flora, resulting in increased metabolic activity and the potential for increased oil degradation activity.     

Dispersal and population expansion in a direct developing marine snail (Littorina saxatilis) following a severe population bottleneck

Most marine benthic invertebrate species have planktonic larvae, and in species in which juveniles and adults have low vagility a larva is obviously an efficient way of active dispersal. A minority of benthic invertebrate species develop without any pelagic phase at all. A largely unsolved question is how and at what rate do these species disperse. We have addressed this question using the marine littoral snail Littorina saxatilis (Olivi) as an example of a species that completely lacks larval dispersal. In the Koster archipelago (north part of the Swedish west coast), L. saxatilis occupies rocky island habitats of different sizes, from large islands to small intertidal skerries (islets). In 1988 an extremely dense bloom of a toxin-producing flagellate killed more than 99% of this snail species in this area. Populations of larger islands were reduced, often to less than 1%, but were restored over 2–4 yr. In contrast, populations of small intertidal skerries were completely wiped out and thus could not increase by local recruitment. Four years later, however, four of 33 skerries (12%) were successfully recolonized with relatively dense populations, and another five had received a few founder individuals. These results indicate recruitment through founder individuals, and are rough estimates of dispersal rate in a snail species that lacks a pelagic developmental stage.     

新型固定化硝化细菌和好氧反硝化细菌处理氨氮废水

以改性沸石、聚乙烯醇、海藻酸钠作为固定化载体材料,硼酸和氯化钙作为交联剂,采用吸附-包埋-交联法将硝化细菌和好氧反硝化细菌复合固定化制备成微生物小球.通过复合菌配比实验,考察其对氨氮的去除率以及亚硝酸盐和硝酸盐的累积量;对制成的固定化小球做四因素三水平的正交实验,考察不同条件下对氨氮的去除率.结果表明,硝化细菌和好氧反硝化细菌配比为3:2时,氨氮去除率最高达82.32%,亚硝酸盐和硝酸盐的累积量为0.032mg·L^-1和0.053 mg·L^-1;通过正交实验,确定沸石投加量为2g·100mL^-1、温度为30℃、pH值为7.5、振荡速度为130r·min^-1时,对氨氮达到最好的去除效果,去除率达90.31%,此法制得的小球机械性能和吸水性能良好.     

Inter- and intra-morph patterns in helminth communities of sympatric whitefish morphs

Infection patterns of trophically transmitted helminth parasites were compared with feeding ecology in two sympatric whitefish Coregonus lavaretus morphs from two lake systems in northern Norway. In both lakes, the pelagic morph was an obligate zooplanktivore, while the benthic morph utilized both the benthivore and zooplanktivore trophic niches. The differences in niche utilization between the two morphs were associated with differences in trophic morphology (gill raker numbers), suggesting that they were genetically dissimilar and reproductively isolated. The benthic morph had the highest number of helminth species, probably because they exhibited a broader niche width compared to the pelagic morph. In both lakes, the species composition and intensities of helminths reflected the trophic diversification of the whitefish ecotypes with respect to different habitat choice (benthic v . pelagic) and dietary specialization (benthivore v . zooplanktivore feeding strategies within the benthic whitefish morph). Zooplanktivorous fish from both morphs acquired parasites mainly from pelagic copepods and in almost equal quantities. The benthivore feeders within the benthic morph had the highest proportion of parasites with transmission stages from benthic organisms. Host feeding behaviour seemed to be a major determinant of the helminth community structure, and helminths appeared to be useful indicators of long-term trophic specialization of whitefish ecotypes.     

Niche construction by the invasive Asian knotweeds (species complex <Emphasis Type="Italic">Fallopia</Emphasis>): impact on activity,abundance and community structure of denitrifiers and nitrifiers

Big Asian knotweeds (Fallopia spp.) are among the most invasive plant species in north-western Europe. We suggest that their success is partially explained by biological and chemical niche construction. In this paper, we explored the microbial mechanisms by which the plant modifies the nitrogen cycle. We found that Fallopia spp. decreased potential denitrification enzyme activity (DEA) by reducing soil moisture and reducing denitrifying bacteria density in the soil. The plant also reduced potential ammonia and nitrite oxydizing bacteria enzyme activities (respectively, AOEA and NOEA) in sites with high AOEA and NOEA in uninvaded situation. Modification of AOEA and NOEA were not correlated to modifications of the density of implicated bacteria. AOB and Nitrobacter-like NOB community genetic structures were significantly different in respectively two and three of the four tested sites while the genetic structure of denitrifying bacteria was not affected by invasion in none of the tested sites. Modification of nitrification and denitrification functioning in invaded soils could lead to reduced nitrogen loss from the ecosystem through nitrate leaching or volatilization of nitrous oxides and dinitrogen and could be considered as a niche construction mechanism of Fallopia.     

Denitrification likely catalyzed by endobionts in an allogromiid foraminifer

Nitrogen can be a limiting macronutrient for carbon uptake by the marine biosphere. The process of denitrification (conversion of nitrate to gaseous compounds, including N₂ (nitrogen gas)) removes bioavailable nitrogen, particularly in marine sediments, making it a key factor in the marine nitrogen budget. Benthic foraminifera reportedly perform complete denitrification, a process previously considered nearly exclusively performed by bacteria and archaea. If the ability to denitrify is widespread among these diverse and abundant protists, a paradigm shift is required for biogeochemistry and marine microbial ecology. However, to date, the mechanisms of foraminiferal denitrification are unclear, and it is possible that the ability to perform complete denitrification is because of the symbiont metabolism in some foraminiferal species. Using sequence analysis and GeneFISH, we show that for a symbiont-bearing foraminifer, the potential for denitrification resides in the endobionts. Results also identify the endobionts as denitrifying pseudomonads and show that the allogromiid accumulates nitrate intracellularly, presumably for use in denitrification. Endobionts have been observed within many foraminiferal species, and in the case of associations with denitrifying bacteria, may provide fitness for survival in anoxic conditions. These associations may have been a driving force for early foraminiferal diversification, which is thought to have occurred in the Neoproterozoic era when anoxia was widespread.     

Denitrification in deep subsurface sediments

Dissimilatory nitrate reduction (denitrification) in subsurface sediments by indigenous microflora was investigated in samples obtained over a range of depths from 0 to 289 m. Denitrifying activity in sediment samples retrieved from similar stratigraphic horizons at four different sites was determined by measuring the accumulation of N₂O using the acetylene blockage technique. Denitrification was detected in unamended samples which received only prereduced deionized water at almost all depths in all sediments sampled. The surface sediments showed the highest denitrification activity. In the deeper sediments, denitrifying activity was much higher in saturated sandy samples and lower or absent in drier clay samples. Addition of nitrate enhanced denitrification activity in all samples from below the water table down to the maximum depth sampled (289 m), while addition of a carbon (succinate) source in general had no stimulatory effect. These results show that denitrifying microorganisms were present in all of the deep subsurface sediments tested in this study. Furthermore, these results suggest that adequate supplies of metabolizable organic carbon were available to support denitrifying activity. However, denitrification may be limited by inadequate supplies of nitrate in the sediments.     

Interactions between Benthic Copepods,Bacteria and Diatoms Promote Nitrogen Retention in Intertidal Marine Sediments

The present study aims at evaluating the impact of diatoms and copepods on microbial processes mediating nitrate removal in fine-grained intertidal sediments. More specifically, we studied the interactions between copepods, diatoms and bacteria in relation to their effects on nitrate reduction and denitrification. Microcosms containing defaunated marine sediments were subjected to different treatments: an excess of nitrate, copepods, diatoms (Navicula sp.), a combination of copepods and diatoms, and spent medium from copepods. The microcosms were incubated for seven and a half days, after which nutrient concentrations and denitrification potential were measured. Ammonium concentrations were highest in the treatments with copepods or their spent medium, whilst denitrification potential was lowest in these treatments, suggesting that copepods enhance dissimilatory nitrate reduction to ammonium over denitrification. We hypothesize that this is an indirect effect, by providing extra carbon for the bacterial community through the copepods'' excretion products, thus changing the C/N ratio in favour of dissimilatory nitrate reduction. Diatoms alone had no effect on the nitrogen fluxes, but they did enhance the effect of copepods, possibly by influencing the quantity and quality of the copepods'' excretion products. Our results show that small-scale biological interactions between bacteria, copepods and diatoms can have an important impact on denitrification and hence sediment nitrogen fluxes.     

Vigorous denitrification by a heterotrophic nitrifier of the genusAlcaligenes

A heterotrophic nitrifyingAlcaligenes sp., previously isolated from soil and shown to be very active in the aerobic oxidation of pyruvic oxime (and hydroxylamine) to nitrite, is now shown to be quite active as a denitrifier. The bacterium synthesized nitrite, nitrous oxide, and nitrogen gas from nitrate when grown anaerobically and could individually reduce nitrate, nitrite, nitric oxide, and nitrous oxide to nitrogen gas when these nitrogen-oxides were added to dense cell suspensions. No evidence was obtained for the release of nitric oxide during reduction of nitrate and nitrite. The specific rates of reduction of the nitrogen-oxide were similar to those of well-known laboratory strains of denitrifying bacteria. The induction of an entire set of denitrifying enzymes at normal levels in a heterotrophic nitrifier is novel. The nitrification-denitrification capability ofAlcaligenes sp. may confer certain advantages to this and analogous organisms in the environment.