Quantitatively Evaluating Restoration Experiments: Research Design, Statistical Analysis, and Data Management Considerations

Conceptual and logistical challenges associated with the design and analysis of ecological restoration experiments are often viewed as being insurmountable, thereby limiting the potential value of restoration experiments as tests of ecological theory. Such research constraints are, however, not unique within the environmental sciences. Numerous natural and anthropogenic disturbances represent unplanned, uncontrollable events that cannot be replicated or studied using traditional experimental approaches and statistical analyses. A broad mix of appropriate research approaches (e.g., long-term studies, large-scale comparative studies, space-for-time substitution, modeling, and focused experimentation) and analytical tools (e.g., observational, spatial, and temporal statistics) are available and required to advance restoration ecology as a scientific discipline. In this article, research design and analytical options are described and assessed in relation to their applicability to restoration ecology. Significant research benefits may be derived from explicitly defining conceptual models and presuppositions, developing multiple working hypotheses, and developing and archiving high-quality data and metadata. Flexibility in research approaches and statistical analyses, high-quality databases, and new sampling approaches that support research at broader spatial and temporal scales are critical for enhancing ecological understanding and supporting further development of restoration ecology as a scientific discipline.     

Coralline algae (Rhodophyta) in a changing world: integrating ecological,physiological, and geochemical responses to global change

Coralline algae are globally distributed benthic primary producers that secrete calcium carbonate skeletons. In the context of ocean acidification, they have received much recent attention due to the potential vulnerability of their high‐Mg calcite skeletons and their many important ecological roles. Herein, we summarize what is known about coralline algal ecology and physiology, providing context to understand their responses to global climate change. We review the impacts of these changes, including ocean acidification, rising temperatures, and pollution, on coralline algal growth and calcification. We also assess the ongoing use of coralline algae as marine climate proxies via calibration of skeletal morphology and geochemistry to environmental conditions. Finally, we indicate critical gaps in our understanding of coralline algal calcification and physiology and highlight key areas for future research. These include analytical areas that recently have become more accessible, such as resolving phylogenetic relationships at all taxonomic ranks, elucidating the genes regulating algal photosynthesis and calcification, and calibrating skeletal geochemical metrics, as well as research directions that are broadly applicable to global change ecology, such as the importance of community‐scale and long‐term experiments in stress response.     

Talitrid and Tylid crustaceans bioecology as a tool to monitor and assess sandy beaches’ ecological quality condition

In the last decades, the sharp increase of human activities on sandy beaches has introduced several detrimental impacts on these ecosystems, highlighting the importance of developing environmental quality assessments and sustainable management and protection plans for these environments. The study of key species at the population level represents an adequate and important approach to the ecosystem's ecological quality if the impacts of environmental disturbances, namely derived from human activities, are to be assessed. Talitrid and Tylid crustaceans often form abundant populations in temperate exposed sandy beaches, and might represent the bulk of the macrofaunal communities. In the present case study, the comparison of distinct Talitrid and Tylid populations on Atlantic (Portugal) and Mediterranean (Italy and Tunisia) beaches allowed to assess the adaptation of these animals on local and macro scale scenarios and evaluate the importance of bioecological studies as auxiliary tools in environmental monitoring and in the ecological quality assessment of sandy beaches. The results revealed that Talitrid and Tylid populations have a strong plasticity over geographic gradients and to local environments, presenting a high degree of variation on population ecology, namely latitudinal clines on several life history traits. Also, since the studies were performed on sandy beaches with similar degrees of exposure to wave action and low degrees of human disturbance, the present work may play a relevant role as reference knowledge in environmental monitoring studies and as an ecological quality assessment tool that might be used to evaluate the impacts of environmental disturbances on sandy beach ecosystems, namely from human origin.     

Four opportunities for studies of ecological succession

Lessons learned from the study of ecological succession have much to offer contemporary environmental problem solving but these lessons are being underutilized. As anthropogenic disturbances increase, succession is more relevant than ever. In this review, we suggest that succession is particularly suitable to address concerns about biodiversity loss, climate change, invasive species, and ecological restoration. By incorporating modern experimental techniques and linking results across environmental gradients with meta-analyses, studies of succession can substantially improve our understanding of other ecological phenomena. Succession can help predict changes in biodiversity and ecosystem services impacted by invasive species and climate change and guide manipulative responses to these disruptions by informing restoration efforts. Succession is still a critical, integrative concept that is central to ecology.     

Effects of zinc on microalgal biofilms in intertidal and subtidal habitats

Microalgal biofilms are sensitive to environmental conditions. Impacts of contaminants on assemblages of marine biofilm are often investigated in laboratories or in mesocosms. Such experiments are rarely representative of the effects of contaminants on biofilms under natural conditions. Studies in field situations, with enough power to detect impacts, are necessary to develop a better understanding of the effects of contaminants on ecological processes. Metals are a common contaminant of marine systems and can cause disturbances to assemblages. Using a new technique to experimentally deliver contaminants to microalgal assemblages, hypotheses were tested regarding the effects of zinc on microalgal biofilms growing on settlement panels in subtidal and intertidal habitats. PAM fluorometry was used to assess the amount and physiological state of biofilms on panels. Control panels deployed for 1 month in each habitat had significantly greater amounts of biofilm than those exposed to zinc. After deployment for 3 months, the results varied with location. The observed effects on the biofilm did not, however, cause significant changes in the macro-invertebrate assemblages that developed on the panels.     

Effects of zinc on microalgal biofilms in intertidal and subtidal habitats

Microalgal biofilms are sensitive to environmental conditions. Impacts of contaminants on assemblages of marine biofilm are often investigated in laboratories or in mesocosms. Such experiments are rarely representative of the effects of contaminants on biofilms under natural conditions. Studies in field situations, with enough power to detect impacts, are necessary to develop a better understanding of the effects of contaminants on ecological processes. Metals are a common contaminant of marine systems and can cause disturbances to assemblages. Using a new technique to experimentally deliver contaminants to microalgal assemblages, hypotheses were tested regarding the effects of zinc on microalgal biofilms growing on settlement panels in subtidal and intertidal habitats. PAM fluorometry was used to assess the amount and physiological state of biofilms on panels. Control panels deployed for 1 month in each habitat had significantly greater amounts of biofilm than those exposed to zinc. After deployment for 3 months, the results varied with location. The observed effects on the biofilm did not, however, cause significant changes in the macro-invertebrate assemblages that developed on the panels.     

Undaria pinnatifida: A case study to highlight challenges in marine invasion ecology and management

Marine invasion ecology and management have progressed significantly over the last 30 years although many knowledge gaps and challenges remain. The kelp Undaria pinnatifida, or “Wakame,” has a global non‐native range and is considered one of the world's “worst” invasive species. Since its first recorded introduction in 1971, numerous studies have been conducted on its ecology, invasive characteristics, and impacts, yet a general consensus on the best approach to its management has not yet been reached. Here, we synthesize current understanding of this highly invasive species and adopt Undaria as a case study to highlight challenges in wider marine invasion ecology and management. Invasive species such as Undaria are likely to continue to spread and become conspicuous, prominent components of coastal marine communities. While in many cases, marine invasive species have detectable deleterious impacts on recipient communities, in many others their influence is often limited and location specific. Although not yet conclusive, Undaria may cause some ecological impact, but it does not appear to drive ecosystem change in most invaded regions. Targeted management actions have also had minimal success. Further research is needed before well‐considered, evidence‐based management decisions can be made. However, if Undaria was to become officially unmanaged in parts of its non‐native range, the presence of a highly productive, habitat former with commercial value and a broad ecological niche, could have significant economic and even environmental benefit. How science and policy reacts to the continued invasion of Undaria may influence how similar marine invasive species are handled in the future.     

Overview of the chemical ecology of benthic marine invertebrates along the western Antarctic peninsula

Thirteen years ago in a review that appeared in the American Zoologist, we presented the first survey of the chemical and ecological bioactivity of Antarctic shallow-water marine invertebrates. In essence, we reported that despite theoretical predictions to the contrary the incidence of chemical defenses among sessile and sluggish Antarctic marine invertebrates was widespread. Since that time we and others have significantly expanded upon the base of knowledge of Antarctic marine invertebrates' chemical ecology, both from the perspective of examining marine invertebrates in new, distinct geographic provinces, as well as broadening the evaluation of the ecological significance of secondary metabolites. Importantly, many of these studies have been framed within established theoretical constructs, particularly the Optimal Defense Theory. In the present article, we review the current knowledge of chemical ecology of benthic marine invertebrates comprising communities along the Western Antarctic Peninsula (WAP), a region of Antarctica that is both physically and biologically distinct from the rest of the continent. Our overview indicates that, similar to other regions of Antarctica, anti-predator chemical defenses are widespread among species occurring along the WAP. In some groups, such as the sponges, the incidence of chemical defenses against predation is comparable to, or even slightly higher than, that found in tropical marine systems. While there is substantial knowledge of the chemical defenses of benthic marine invertebrates against predators, much less is known about chemical anti-foulants. The sole survey conducted to date suggests that secondary metabolites in benthic sponges are likely to be important in the prevention of fouling by benthic diatoms, yet generally lack activity against marine bacteria. Our understanding of the sensory ecology of Antarctic benthic marine invertebrates, despite its great potential, remains in its infancy. For example, along the WAP, community-level non-consumptive effects occur when amphipods chemically sense fish predators and respond by seeking refuge in chemically-defended macroalgae. Such interactions may be important in releasing amphipods from predation pressure and facilitating their unusually high abundances along the WAP. Moreover, recent studies on the sensory biology of the Antarctic keystone sea star Odontaster validus indicate that chemotactile-mediated interactions between conspecifics and other sympatric predatory sea stars may have significant ramifications in structuring community dynamics. Finally, from a global environmental perspective, understanding how chemical ecology structures marine benthic communities along the WAP must increasingly be viewed in the context of the dramatic impacts of rapid climatic change now occurring in this biogeographic region.     

An ecological perspective in aquatic ecotoxicology: Approaches and challenges

This paper aims to highlight the considerable potential of a better integration of ecological theory in aquatic ecotoxicology. It outlines how community ecology, studies on trophic interaction and disturbance ecology could provide an enhanced theoretical basis for aquatic ecotoxicology and increase ecological relevance in environmental risk assessment of chemicals. Based on the literature and own research, approaches from aquatic ecotoxicology are presented, which are based on ecological considerations and address a higher level of biological complexity for risk assessment strategies of chemicals. The concepts of species-sensitivity distribution (SSD), pollution-induced community tolerance (PICT), the use of model ecosystems and the sediment quality triad (SQT) in ecological risk assesment as well as inputs from ecotoxicology into landscape ecology are illustrated. These examples aim to evidence aquatic ecotoxicology as a rewarding field of ecological research.     

Potential response to climate change of a semi-arid coastal ecosystem in eastern Mediterranean

Eastern Mediterranean gulfs, adjacent to small semi-arid watersheds are particularly susceptible to climate changes. In this study, an analysis was performed for air temperature and rainfall during 1955–2010 over a coastal ecosystem in NE Aegean, and potential effects of recent changes on the physical setting and ecological status of the marine system were studied. A trend toward drier conditions was revealed, and in order to assess possible effects on the surrounding basin, a watershed model was applied. In addition, the hydrology and ecology of the marine ecosystem were studied using a water budget model along with available field data. Based on local climatological data, dryness may lead to a decrease of one to two orders of magnitude in the amount of runoff during a dry annual cycle, resulting to a fivefold increase in the residence time of the marine system. High residence time associated with terrestrial nutrient inputs and strong stratification result to phytoplankton blooms during winter, including harmful algal blooms. Integrated approaches, modeling both the hydrology and ecology of watersheds and adjacent water bodies, are essential toward forecasting, understanding and management of potential alterations in functioning of coastal ecosystems due to recent climate changes.     

Ecology,Environmental Impact Statements,and Ecological Risk Assessment: A Brief Historical Perspective

Ecological risk assessment will continue to increase in importance as a conceptual and methodological basis for evaluating environmental impacts as required by the National Environmental Policy Act. Understanding the historical strengths and limitations of more traditional environmental assessments performed in support of the NEPA can facilitate the effective incorporation of ecological risk assessment into the NEPA process. Such integration will also benefit from a knowledge of the historical and continuing development of the ecological risk assessment process, as well as from a recognition of the contri butions from modern quantitative ecology and ecosystem science. Adopting a risk-based approach can improve the NEPA process by providing a framework for consistent and comprehensive ecological assessment and by providing a conceptual and methodological basis for addressing the varied uncertainties attendant to environmental assessments. The primary concern in integrating ecological risk assessment into the NEPA process is that ecological risk assessment not merely become a new name for traditional environmental impact assessments. While the integration of ecological risk assessment into the NEPA process occurs, it is important to begin to outline the next transition in environmental assessment capabilities. Operationally linking ecological risk assessment methods with formal decision models appears as a worthwhile objective in beginning this transition.     

湿地农田渠系的生态环境影响研究综述

天然湿地开垦为农田,排水渠系扩张,随之带来两个方面的生态环境影响。作为廊道,排水渠系的隔离作用割裂了景观,造成湿地景观破碎化,甚至景观性质的改变;同时,其通道作用影响了湿地的水文过程,将局部湿地排干而转变为农田,并成为农田污染物向受纳河流水体运移的快速通道。因此,根据排水渠系的功能特点,在局域和区域两个层次上,对其生态环境影响开展综合研究,可以为湿地保护和恢复提供切实可行的对策措施。在回顾相关研究的基础上,提出了排水渠系生态环境影响研究的一个思路：即基于景观生态学和生态学模型等,开展排水渠系生态环境影响的机制研究;基于环境影响评价和生态系统健康评价等,开展排水渠系生态环境影响的效应研究;以及基于恢复生态学等,开展排水渠系的生态调控对策措施研究,从而为排水渠系的生态环境影响研究提供系统性途径。     

Global Life Cycle Paper Flows,Recycling Metrics,and Material Efficiency

Despite major improvements in recycling over the last decades, the pulp and paper sector is a significant contributor to global greenhouse gas emissions and other environmental pressures. Further reduction of virgin material requirements and environmental impacts requires a detailed understanding of the global material flows in paper production and consumption. This study constructs a Sankey diagram of global material flows in the paper life cycle, from primary inputs to end‐of‐life waste treatment, based on a review of publicly available data. It then analyzes potential improvements in material flows and discusses recycling and material efficiency metrics. The article argues that the use of the collection rate as a recycling metric does not directly stimulate avoidance of virgin inputs and associated impacts. An alternative metric compares paper for recycling (recovered paper) with total fibrous inputs and indicates that the current rate is at just over half of the technical potential. Material efficiency metrics are found to be more useful if they relate to the reuse potential of wastes. The material balance developed in this research provides a solid basis for further study of global sustainable production and consumption of paper. The conclusions on recycling and efficiency should be considered for improving environmental assessment and stimulating a shift toward resource efficiency and the circular economy.     

Soil ecotoxicology: state of the art and future directions

Developments in soil ecotoxicology started with observations on pesticide effects on soil invertebrates in the 1960s. To support the risk assessment of chemicals, in the 1980s and 1990s development of toxicity tests was the main issue, including single species tests and also more realistic test systems like model ecosystems and field tests focusing on structural and functional endpoints. In the mean time, awareness grew about issues like bioavailability and routes of exposure, while biochemical endpoints (biomarkers) were proposed as sensitive and potential early-warning tools. In recent years, interactions between different chemicals (mixture toxicity) and between chemical and other stressors attracted scientific interest. With the development of molecular biology, omics tools are gaining increasing interest, while the ecological relevance of exposure and effects is translating into concepts like (chemical) stress ecology, ecological vulnerability and trait-based approaches. This contribution addresses historical developments and focuses on current issues in soil ecotoxicology. It is concluded that soil ecotoxicological risk assessment would benefit from extending the available battery of toxicity tests by including e.g. isopods, by paying more attention to exposure, bioavailability and toxicokinetics, and by developing more insight into the ecology of soil organisms to support better understanding of exposure and long-term consequences of chemical exposure at the individual, population and community level. Ecotoxicogenomics tools may also be helpful in this, but will require considerable further research before they can be applied in the practice of soil ecotoxicological risk assessment.     

Integrating theory into disturbance interaction experiments to better inform ecosystem management

Managing multiple, interacting disturbances is a key challenge to biodiversity conservation, and one that will only increase as global change drivers continue to alter disturbance regimes. Theoretical studies have highlighted the importance of a mechanistic understanding of stressor interactions for improving the prediction and management of interactive effects. However, many conservation studies are not designed or interpreted in the context of theory and instead focus on case‐specific management questions. This is a problem as it means that few studies test the relationships highlighted in theoretical models as being important for ecological management. We explore the extent of this problem among studies of interacting disturbances by reviewing recent experimental studies of the interaction between fire and grazing in terrestrial ecosystems. Interactions between fire and grazing can occur via a number of pathways; one disturbance can modify the other's likelihood, intensity or spatial distribution, or one disturbance can alter the other's impacts on individual organisms. The strength of such interactions will vary depending on disturbance attributes (e.g. size or intensity), and this variation is likely to be nonlinear. We show that few experiments testing fire–grazing interactions are able to identify the mechanistic pathway driving an observed interaction, and most are unable to detect nonlinear effects. We demonstrate how these limitations compromise the ability of experimental studies to effectively inform ecological management. We propose a series of adjustments to the design of disturbance interaction experiments that would enable tests of key theoretical pathways and provide the deeper ecological understanding necessary for effective management. Such considerations are relevant to studies of a broad range of ecological interactions and are critical to informing the management of disturbance regimes in the context of accelerating global change.     

Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential

In-depth knowledge about spatial and temporal variation in microbial diversity and function is needed for a better understanding of ecological and evolutionary responses to global change. In particular, the study of microbial ancient DNA preserved in sediment archives from lakes and oceans can help us to evaluate the responses of aquatic microbes in the past and make predictions about future biodiversity change in those ecosystems. Recent advances in molecular genetic methods applied to the analysis of historically deposited DNA in sediments have not only allowed the taxonomic identification of past aquatic microbial communities but also enabled tracing their evolution and adaptation to episodic disturbances and gradual environmental change. Nevertheless, some challenges remain for scientists to take full advantage of the rapidly developing field of paleo-genetics, including the limited ability to detect rare taxa and reconstruct complete genomes for evolutionary studies. Here, we provide a brief review of some of the recent advances in the field of environmental paleomicrobiology and discuss remaining challenges related to the application of molecular genetic methods to study microbial diversity, ecology, and evolution in sediment archives. We anticipate that, in the near future, environmental paleomicrobiology will shed new light on the processes of microbial genome evolution and microbial ecosystem responses to quaternary environmental changes at an unprecedented level of detail. This information can, for example, aid geological reconstructions of biogeochemical cycles and predict ecosystem responses to environmental perturbations, including in the context of human-induced global changes.     

Quantitative approaches in climate change ecology

Contemporary impacts of anthropogenic climate change on ecosystems are increasingly being recognized. Documenting the extent of these impacts requires quantitative tools for analyses of ecological observations to distinguish climate impacts in noisy data and to understand interactions between climate variability and other drivers of change. To assist the development of reliable statistical approaches, we review the marine climate change literature and provide suggestions for quantitative approaches in climate change ecology. We compiled 267 peer‐reviewed articles that examined relationships between climate change and marine ecological variables. Of the articles with time series data (n = 186), 75% used statistics to test for a dependency of ecological variables on climate variables. We identified several common weaknesses in statistical approaches, including marginalizing other important non‐climate drivers of change, ignoring temporal and spatial autocorrelation, averaging across spatial patterns and not reporting key metrics. We provide a list of issues that need to be addressed to make inferences more defensible, including the consideration of (i) data limitations and the comparability of data sets; (ii) alternative mechanisms for change; (iii) appropriate response variables; (iv) a suitable model for the process under study; (v) temporal autocorrelation; (vi) spatial autocorrelation and patterns; and (vii) the reporting of rates of change. While the focus of our review was marine studies, these suggestions are equally applicable to terrestrial studies. Consideration of these suggestions will help advance global knowledge of climate impacts and understanding of the processes driving ecological change.     

Japanese Honeysuckle (Lonicera japonica) as an Invasive Species; History,Ecology, and Context

Japanese honeysuckle (Lonicera japonica) was introduced outside of Asia in the early 19th century and is now invasive to varying degrees on every continent, except Anarctica, and many archipelagos. The basic ecology and life history of Japanese honeysuckle are well known and described here; however, research needs on the underlying causes of the voracity and subsequent ecological impacts of this species are many. Virtually all ecological experimentation with Japanese honeysuckle has been conducted in the southeastern U.S., thus more data are needed in other regions, particularly South America and Africa. Although Japanese honeysuckle is naturalized in many areas where it has been introduced, there still may be hope for the control of local infestations and its further spread in areas that have a fairly recent introduction history. Japanese honeysuckle may be secure throughout much of its introduced range, but land management principles that discourage its use and public education to prevent further dispersal are recommended strongly.     

A review of the occurrence of inter‐colony segregation of seabird foraging areas and the implications for marine environmental impact assessment

Understanding the determinants of species’ distributions is a fundamental aim in ecology and a prerequisite for conservation but is particularly challenging in the marine environment. Advances in bio‐logging technology have resulted in a rapid increase in studies of seabird movement and distribution in recent years. Multi‐colony studies examining the effects of intra‐ and inter‐colony competition on distribution have found that several species exhibit inter‐colony segregation of foraging areas, rather than overlapping distributions. These findings are timely given the increasing rate of human exploitation of marine resources and the need to make robust assessments of likely impacts of proposed marine developments on biodiversity. Here we review the occurrence of foraging area segregation reported by published tracking studies in relation to the density‐dependent hinterland (DDH) model, which predicts that segregation occurs in response to inter‐colony competition, itself a function of colony size, distance from the colony and prey distribution. We found that inter‐colony foraging area segregation occurred in 79% of 39 studies. The frequency of occurrence was similar across the four seabird orders for which data were available, and included species with both smaller (10–100 km) and larger (100–1000 km) foraging ranges. Many predictions of the DDH model were confirmed, with examples of segregation in response to high levels of inter‐colony competition related to colony size and proximity, and enclosed landform restricting the extent of available habitat. Moreover, as predicted by the DDH model, inter‐colony overlap tended to occur where birds aggregated in highly productive areas, often remote from all colonies. The apparent prevalence of inter‐colony foraging segregation has important implications for assessment of impacts of marine development on protected seabird colonies. If a development area is accessible from multiple colonies, it may impact those colonies much more asymmetrically than previously supposed. Current impact assessment approaches that do not consider spatial inter‐colony segregation will therefore be subject to error. We recommend the collection of tracking data from multiple colonies and modelling of inter‐colony interactions to predict colony‐specific distributions.