An improved method of microhabitat assessment relevant to predation risk

Animals may select the microhabitats they use in response to a real or perceived risk of attack by visually hunting predators. However, to demonstrate this requires measuring visual cover at the microhabitat level, which can be labor-intensive and may require specialized equipment. Simpler methods lack repeatability, particularly when multiple observers are involved. We devised, and describe here, the quadrant cover method (QCM), which provides rapid, objective assessment of the degree of concealment that microhabitats provide from visual predators. Our method gives results that correlate strongly with those obtained using a conventional sight board, but requires less than 25% of the time. The method is highly repeatable, with negligible observer bias. The QCM is ideal in microhabitat studies in which the variable of interest is visual exposure to other animals such as predators.     

Microhabitat Variation Explains Local‐scale Distribution of Terrestrial Amazonian Lizards in Rondônia,Western Brazil

We investigate the role of ecology and phylogeny in the association between lizard abundance and microhabitat variables in an Amazon rain forest site. Using pitfall trap arrays, we collected data from 349 individuals belonging to 23 lizard species. After accounting for spatial autocorrelation and using a canonical correspondence analysis (CCA), we found that lizard captures were significantly associated with microhabitat variables, which accounted for 48 percent of the observed variation. Furthermore, a canonical phylogenetic ordination (CPO) indicated that microhabitat variables are more important in determining the distribution of lizard species than phylogenetic relationships among species. Termite nests, canopy openness, and tree circumference were strongly associated with the number of captures of certain lizard species. Our results confirm autecology studies of individual lizard species for which data are available. We suggest that maintaining heterogeneous forested microhabitats should be a central goal for sustaining a high lizard biodiversity in Amazon rain forests.     

Effect of observer experience on the monitoring of a mouflon population

Analysis of changes in population size can be severely biased when factors related to the acquisition of data, such as differences between observer experience and changes through time in the ability of individual observers to detect animals, are not controlled for. We analysed the effect of observer qualification on the number of groups and individuals observed during two census days of a mouflonOvis gmelini musimon xOvis sp. population. The difference between professional wildlife biologists and volunteers was strong during the census day one (87 groups and 410 mouflons vs 55 and 249 by experienced observers and volunteers, respectively) but decreased significantly on the second day for the number of animals detected (390 vs 292 mouflons by experienced observers and volunteers, respectively). Our result indicates that additional training will enhance reliability of data obtained from volunteers. Given the effect of observer qualification on performance during the census, we recommend to use observers of similar and adequate qualification in population counts.     

Optimization of cryptic coloration in heterogeneous habitats

We present a theoretical approach to the optimization of crypsis in heterogeneous habitats. Our model habitat consists of two different microhabitats, and the optimal combination of crypsis in the microhabitats is supposed to maximize the probability of escaping detection by a predator. The probability of escaping detection for a prey is a function of: (i)degree of crypsis, (ii) probability of occurrence in the microhabitats and (iii) probability of encountering a predator in the microhabitats. Because crypsis is background-specific there is a trade-off between crypsis in two visually different microhabitats. Depending on the nature of the trade-off, the optimal coloration is either a compromise between the requirements of the differing microhabitats or entirely adapted to only one of them. An increased risk of predation in one of the microhabitats favours increased crypsis in that microhabitat. Because the trade-off constrains possible optimal solutions, it is not possible to predict the optimal coloration only from factors (i)-(iii). However, habitat choice may fundamentally change the situation. If minimizing predation risk does not incur any costs, the prey should exclusively prefer the microhabitat where it has a lower probability of encountering a predator and better crypsis. The implications of these results for variation in cryptic coloration and polymorphism are discussed.     

Feeding guild structure of beetles on Australian tropical rainforest trees reflects microhabitat resource availability

1.?We tested the hypotheses that feeding guild structure of beetle assemblages changed with different arboreal microhabitats and that these differences were consistent across rainforest tree species. 2.?Hand collection and beating techniques were used from the gondola of the Australian Canopy Crane to collect beetles from five microhabitats (mature leaves, flush leaves, flowers, fruit and suspended dead wood) within the rainforest canopy. A simple randomization procedure was implemented to test whether the abundances of each feeding guild on each microhabitat were different from that expected based on a null hypothesis of random distribution of individuals across microhabitats. 3.?Beetles from different feeding guilds were not randomly distributed, but congregated on those microhabitats that are likely to provide the highest concentrations of their preferred food sources. Herbivorous beetles, in particular, were over-represented on flowers and flush foliage and under-represented on mature leaves and dead wood. Proportional numbers of species within each feeding guild were remarkably uniform across tree species for each microhabitat, but proportional abundances of feeding guilds were all significantly non-uniformly distributed between host tree species, regardless of microhabitat, confirming patterns previously found for arthropods in trees in temperate and tropical forests. 4.?These results show that the canopy beetle community is partitioned into discrete assemblages between microhabitats and that this partitioning arises because of differences in feeding guild structure as a function of the diversity and the temporal and spatial availability of resources found on each microhabitat.     

Factors affecting egg predation in Black-tailed Gulls

In colonial seabirds, nesting density, egg-laying date and nest microhabitat affect the probability of eggs being taken by avian predators. Jungle Crows (Corvus macrorhynchos) are dominant predators of eggs of Black-tailed Gulls (Larus crassirostris). Factors affecting the probability of gulls allowing the crows to attack their nests or depredate their eggs and the probability of eggs being taken were studied by direct observation and egg census, respectively. The effect of vegetation heights, position in the colony, egg-laying date and neighbour nests on the probability of eggs being taken were examined at multiple spatial scales. Gull nests were depredated more easily by larger groups of crows. Nests in peripheral areas (<4 m from the edge of the colony) were also depredated more easily by the crows walking on the ground. Although the nests where eggs were laid early in the season were depredated more frequently, such nests highly synchronised in egg laying within a <2-m radius were less likely to be depredated than less-synchronised nests. The nests in tall vegetation were less likely to be depredated though those having neighbour nests in tall vegetation were not. The number of neighbour nests did not affect the probability of eggs being taken. Antipredation effects of nesting microhabitats vary with spatial scales at which the crows search and attack the nests of gulls.     

不同喀斯特小生境中土壤丛枝菌根真菌的遗传多样性

为探明西南喀斯特地区小生境土壤中丛枝菌根真菌(AMF)的遗传多样性特征, 利用巢式PCR和变性梯度凝胶电泳相结合的分子生物学方法, 对茂兰3种植被类型下的小生境(石缝、石沟、土面) AMF遗传多样性进行了研究。结果发现: 各类小生境都含有丰富的AMF遗传多样性, 灌木林土面的多样性指数和物种丰富度最高, 为4.06和68; 次生林石缝的最低, 为3.16和29, 所研究的9个小生境多样性指数和物种丰富度的平均值分别高达3.67和48, 高于同类研究在其他地区的结果, 这可能主要与喀斯特生态系统复杂的结构和较高的植物多样性有关; 聚类分析显示各类小生境间的AMF群落结构差异显著, 相似性指数最高仅为0.45, 说明小生境所带来的空间异质性对AMF的遗传多样性产生了显著影响; 基因测序显示球囊霉属(Glomus)极有可能是喀斯特地区AMF的优势菌属, 在以后筛选喀斯特地区的高效生态恢复菌种时可重点考虑球囊霉属的一些菌种。     

The Importance of Microhabitat for Biodiversity Sampling

Responses to microhabitat are often neglected when ecologists sample animal indicator groups. Microhabitats may be particularly influential in non-passive biodiversity sampling methods, such as baited traps or light traps, and for certain taxonomic groups which respond to fine scale environmental variation, such as insects. Here we test the effects of microhabitat on measures of species diversity, guild structure and biomass of dung beetles, a widely used ecological indicator taxon. We demonstrate that choice of trap placement influences dung beetle functional guild structure and species diversity. We found that locally measured environmental variables were unable to fully explain trap-based differences in species diversity metrics or microhabitat specialism of functional guilds. To compare the effects of habitat degradation on biodiversity across multiple sites, sampling protocols must be standardized and scale-relevant. Our work highlights the importance of considering microhabitat scale responses of indicator taxa and designing robust sampling protocols which account for variation in microhabitats during trap placement. We suggest that this can be achieved either through standardization of microhabitat or through better efforts to record relevant environmental variables that can be incorporated into analyses to account for microhabitat effects. This is especially important when rapidly assessing the consequences of human activity on biodiversity loss and associated ecosystem function and services.     

Fine‐scale drivers of beetle diversity are affected by vegetation context and agricultural history

Environmental gradients have been shown to affect animal diversity, but knowledge of fine‐scale drivers of insect diversity is, in many cases, poorly developed. We investigated the drivers of beetle diversity and composition at different microhabitats, and how this may be mediated by past agricultural activities. The study was undertaken in temperate eucalypt grassy woodland near Canberra, south‐eastern Australia, with a 200‐year history of pastoral land use. We sampled beetles using pitfall traps at three microhabitats (open grassland, logs and under trees). We analysed the effects of soil properties, vegetation structure, and plant composition on beetle composition, and compared beetle responses among the microhabitats. We found that microhabitat was a strong determinant of the way beetle communities responded to their environment. Soil nutrients (C, N and P) were the strongest drivers of beetle species richness, abundance and composition at open and log microhabitat, however vegetation structure (tree basal area) was more important for beetle richness, abundance and biomass under trees. We also found significant differences in beetle composition among distinct ground‐layer plant communities at log and tree microhabitat. We show that prior agricultural land use, particularly fertilization, has altered soil and plant communities, and that these effects continue to flow through the system affecting beetle assemblages. These findings have implications for future management of microhabitat structures in temperate grassy woodlands with a history of agricultural use.     

Importance of microhabitat and acorn burial on Quercus ilex early recruitment: non-additive effects on multiple demographic processes

This study investigates the effect of microhabitat and seed burial on the main demographic processes operating during the early recruitment of Quercus ilex, such as postdispersal seed predation, seed germination, and seedling emergence, survival and growth. The effect of burial was positive over all the processes analysed in this study, since predation rate was lower (63.6% vs. 88%), whereas germination (53.1% vs. 21.8%) and emergence (32.0% vs. 5.5%) were higher for buried acorns. The quality of some microhabitats remained similar throughout the stages and processes studied. Thus, afforestation provided especially suitable microhabitats for oak establishment, since seed predation was lower, while germination, emergence and seedling survival were higher, than in any other microhabitat. By contrast, the quality of some microhabitats, such as open sites and Holm oaks, differed between recruitment stages. Acorns in open sites escaped predation and germinated easily, but most seedlings died due to summer drought. Similarly, although acorns under Holm oaks can germinate and survive drought, they cannot survive to postdispersal predators. This uncoupling results in a post-dispersal change in the spatial distribution of Q. ilex recruits. Furthermore, there were significant interactions between burial and microhabitat for some demographic processes. The recruitment was in afforestations high irrespective of burial, suggesting that burial is not as beneficial in high-quality habitats as it is in lower-quality ones. An accurate understanding of plant recruitment requires the determination not only of the direct effects of limiting factors but also the potential interactions occurring between them.     

Conceptual problems of Ecological Continuity and its bioindicators

Very old, undisturbed forest stands may be important for biodiversity through their content of microhabitats or for the long periods available for colonisation, or for both. The term Ecological Continuity (EC) has been used to ascribe value to old forest stands. The relative importance of microhabitat and time for colonisation are usually not kept apart when EC is used as a conservation criterium. EC is broadly applied but poorly defined. Use of EC may lead to underestimation of the importance of forest dynamics and dispersal, and to overestimation of the importance of local land use history. If bioindicators of long-term habitat persistence are to be used, species with low dispersal capacity should be chosen. However, many lichens and other fungi, bryophytes and insects cited as indicators of EC, seem to have a patch-tracking lifestyle. They are 'colonists' according to life history strategy classification, and rather seem to indicate specific microhabitats. Terrestrial molluscs, some vascular forest plants, and those bryophytes and lichenized fungi classified as 'perennial stayers' in life history strategy classification, might be used to indicate long-term habitat persistence in forests, but more research is needed to evaluate such indicators.     

Microhabitat distribution of two Florida scrub endemic plants in comparison to their habitat-generalist congeners

Habitat-specialist species may be restricted to a narrower range of microhabitats than habitat-generalist species. We addressed this hypothesis by comparing microhabitats of two pairs of congeners that differ in habitat specificity and co-occur in one distinct habitat type, Florida rosemary scrub. We characterized microhabitats of rosemary scrub specialists, Polygonella basiramia and Lechea cernua, their habitat-generalist congeners, Polygonella robusta and Lechea deckertii, and random points in the rosemary scrub habitat. Plants of both habitat specialists occurred in microhabitats with significantly more bare sand than plants of habitat-generalist species and random points. Plants of all four species occurred in microhabitats that were farther from dominant shrubs, Ceratiola and Quercus spp., than random points. Seedlings of both habitat specialists grew larger in bare sand microhabitats, whereas ground lichens and litter did not affect seedling growth of the habitat generalists. As the time since fire increases, bare sand cover decreases, Ceratiola density increases, Quercus density remains constant, and shrubs become taller. Physical characteristics, such as soil temperature, soil carbon, and soil moisture, differ slightly with respect to microhabitat. Our results suggest that P. basiramia and L. cernua are specialized on bare sand microhabitats that characterize their preferred habitat, rosemary scrub. Microhabitat specialization may limit the distribution of these rare species.     

Food resource matching by foraging tits Parus spp. during spring-summer in a Mediterranean mixed forest; evidence for an ideal free distribution

We analysed whether patterns of microhabitat use by Blue Tits Parus caeruleus , Great Tits Parus major and Crested Tits Parus cristatus inhabiting a mixed forest consistently matched the patterns of food availability experienced by foraging birds during spring-summer. The use of five microhabitats by each bird species (the foliage of three tree species, shrubs and ground) and the availability of food in trees during the prebreeding, breeding and post-breeding periods of the birds' annual cycle were measured. All three tit species foraged mainly in the outer part of tree canopies (small branches and leaves or needles). Tit distributions between tree species matched food resource distributions irrespective of overall food resource levels, which varied four-fold between the study periods, and tit species. Tits also exploited secondary microhabitats (shrubs and ground) in periods of low food availability; Blue Tits tended to use shrubs, whereas Great and Crested Tits foraged on the ground. Between-trees distributions fitted that expected from an ideal free distribution, suggesting that food availability and intraspecific exploitative competition were the main factors governing tree use by tits. In contrast, patterns of use of secondary microhabitats (shrubs and ground) seemed to indicate a role for the species-specific morphological configurations of each tit species since Blue Tits are better adapted to hang and tended to forage in shubs, whereas Great and Crested Tits are better adapted to feed on horizontal surfaces and tended to forage on the ground. No evidence of interspecific interactions was observed. Overall, the results pointed to an independent exploitation of Mediterranean mixed forest by each bird species, food availability and food accessibility being the main factors affecting microhabitat use by foraging tits.     

Corticolous arthropods under climatic fluctuations: compensation is more important than migration

Animals can cope with fluctuating climates by physiological tolerance, tracking of climatic fluctuations (migration) and compensatory redistribution among (micro)habitats (compensation). Compensation is less demanding and thus more important than migration at large geographic scales. It is not clear however which strategy is more important at the small scale of a microhabitat landscape. I investigated how six arthropod species (Collembola, Oribatei, Psocoptera, Isopoda) respond to microclimatic fluctuations at the surface of exposed tree trunks. Across a nine-month period I characterized the microclimatic zonation of 299 trunks, and focally sampled the arthropods from different microhabitat types (different cryptogam species and bark crevices) within different microclimatic zones. I found that compensatory microhabitat-use was a general phenomenon. The distribution of all species across microhabitats was influenced significantly by ambient microclimate. Also, the arthropods' microhabitat use changed throughout their ontogeny, and microhabitats were used even if they were rare. Most interestingly, the arthropods responded to microclimatic fluctuations primarily by redistribution among microhabitats and less by fluctuations of overall abundances across all microhabitats. Hence compensation was more important than migration. The animals moved for centimeters to decimeters rather than for decimeters to meters; they perceived and utilized their environment primarily at the finest, but also most complex scale. This has implications for the resilience of arthropod populations, their interactions with cryptogams and the turnover of species between macrohabitats.     

Microhabitat preference constrains invasive spread of non-native natal grass (<Emphasis Type="Italic">Melinis repens</Emphasis>)

Preventing the establishment of a non-native species is critical for ensuring the species does not become invasive, yet most non-native species will have little impact on their environment. Despite this, little is known about what influences whether a species will remain relatively benign, or whether it will cause economic or ecological harm. Understanding a plant’s microhabitat provides insight into the necessary conditions for establishment and the current distribution limitations of a population. We investigated microhabitat preference of the non-native natal grass (Melinis repens (Willd.) Zizka) in Florida scrub using microhabitat sampling to measure vegetation composition. We examined the extent to which microhabitats were associated with natal grass presence and biomass in invaded disturbed scrub and roadside plots using backwards stepwise logistic regression and general linear models to identify significant microhabitat variables. We further compared these plots with those in undisturbed, uninvaded scrub to characterize vegetation across habitat types, and used our model to predict the probability of natal grass invasion in undisturbed scrub. Natal grass preferred microhabitats with high litter volume and distance to shrubs and intermediate cactus, graminoid, and vine cover. Roadside natal grass achieved higher biomass and was less microhabitat limited than disturbed scrub natal grass. We determined that undisturbed scrub plots represent distinct microhabitats that natal grass is unlikely to invade. Microhabitat sampling provides land-managers a non-intrusive technique to assess potential habitat suitability based non-native plant preferences before a costly invasion occurs.     

Microhabitat use in a mediterranean riverine fish assemblage

Summary We examined microhabitat use in Barbus graellsii, Barbus haasi, Chondrostoma toxostoma, Rutilus arcasii, and Salmo gairdneri over a 19 month period in the upper Rio Matarraña, Spain. B. graellsii and Ch. toxostoma exhibited non-random microhabitat use during all seasons and preferentially occupied deep microhabitats with heterogeneous substrates. During the majority of seasons in which they were present, B. haasi and R. arcasii occurred in microhabitats similar to those occupied by B. graellsii and Ch. toxostoma. S. gairdneri was over-represented in high velocity microhabitats with erosional substrates. We did not observe any evidence of interspecific interference competition or avoidance. Substrate composition did not appear to affect microhabitat use outside of its covariation with depth and velocity. Seaonal variation in microhabitat use by B. graellsii, B. haasi and Ch. toxostoma was strongly correlated with seasonal changes in microhabitat availability. S. gairdneri, however, occurred closer to the substrate when average velocities were high. Larger B. graellsii and B. haasi sometimes occupied deeper, higher velocity microhabitats than did smaller specimens. Larger B. graellsii also occasionally occurred farther from shelter than did smaller specimens; the reverse was true for B. haasi. Larger Ch. toxostoma sometimes were found farther from both the substrate and shelter than smaller individuals, whereas smaller specimens occasionally inhabited deeper areas with more depositional substrates than did larger Ch. toxostoma. During Late Summer 1985, smaller Ch. toxostoma also occupied microhabitats with higher velocities than did larger specimens. A comparison of microhabitat use for two species present in both upper and lower portions of the Matarraña indicated that most differences in microhabitat use could be attributed to inter-site differences in microhabitat availability. The data suggest, hovever, that both species shifted to more protected microhabitats in the higher velocity site. Assemblage members generally occupied statistically distinguishable microhabitats and could be classified as: 1) high-velocity upper water column (S. gairdneri), 2) low velocity lower water column (B. graellsii, Ch. toxostoma and R. arcasii), and 3) shelter-oriented benthic (B. haasi). The introduction of S. gairdneri during Winter 1984 did not produce microhabitat shifts in any of the native species. Whether or not the native species affected microhabitat use in S. gairdneri is unknown. Interspecific competition for space, however, did not appear to strongly influence microhabitat use among the native species.     

Canopy invertebrate community composition on rainforest trees: Different microhabitats support very different invertebrate communities

Tropical rainforest canopies are renowned for their high invertebrate diversity and abundance. The canopy comprises a range of microhabitats representing very different food resources (including photosynthetic, reproductive, and structural tissues). As these resources vary considerably in temporal and spatial availability, nutritional quality, chemical protection and other attributes, we hypothesized that microhabitats support structurally different invertebrate communities. To test this we used the Australian Canopy Crane to sample invertebrates from mature leaves, flush leaves, flowers, fruit and suspended dead wood from 23 plant species. Invertebrate faunas on different microhabitats varied in taxonomic composition and feeding guild structure in support of the microhabitat differentiation hypothesis. Herbivores were found predominantly on new leaves (Hemiptera, Lepidoptera) and especially flowers (Coleoptera, Thysanoptera), but were relatively uncommon on mature leaves. Instead, the mature foliage community was dominated by predators, especially spiders and ants, and supported high abundances of saprophages. Ripe fruit and dead wood were scarce canopy resources that were utilized by a relatively small number of invertebrates, mostly saprophages and fungivores. Flowers supported a more heterogeneous fauna than the leaves in terms of proportional abundances of taxonomic groups and feeding guilds, both within tree species (evenness) and between tree species (non‐uniformity). These results demonstrate microhabitat differentiation in a rainforest canopy and are the first to quantify differences in taxonomic composition, guild structure and abundance patterns between such diverse invertebrate assemblages within host trees. We conclude that studies based only on sampling one microhabitat, and leaves in particular, may provide a distorted picture of invertebrate community structure.     

The effect of turbidity state and microhabitat on macroinvertebrate assemblages: a pilot study of six shallow lakes

Shallow lakes can occur in two alternative stable states, a clear-water state and a turbid state. This is associated with separate assemblages of fish, zooplankton and plants. Little is known about whether macroinvertebrate assemblages differ across both stable states. This study investigated this in a connected set of three turbid and three clear-water shallow lakes. To overcome confounding effects of differences in spatial structure of macrophytes in turbid and clear-water lakes, we sampled three microhabitats that occurred in both alternative stable states: open water, sago pondweed (Potamogeton pectinatus) and reed (Phragmites australis). Univariate analyses indicated no differences in the number of organisms, taxon richness or diversity between turbid and clear-water lakes. Multivariate analysis, however, showed significant differences in the macroinvertebrate community structure of both stable states. Nine taxa explained a significant amount of the variation between both lake types, of which seven preferred the clear-water lakes. The number of organisms and the taxon richness were higher in reed than in the other microhabitats, but diversity and evenness did not differ among the microhabitats. Multivariate analyses could separate all three microhabitats. Eight taxa, mainly detritus feeders and collector–gatherers, explained most of the variation in the data and preferred the reed microhabitat. The effects of stable state (6.8% explained variance) and microhabitat (13.1% explained variance) on the macroinvertebrate assemblages were largely independent from each other (1.5% shared variance). Although macroinvertebrates are not implemented in the initial theory of stable states, our results show clearly different assemblages across both stable states.     

Microhabitat use by larvae and females of a rare barrens butterfly,frosted elfin (<Emphasis Type="Italic">Callophrys irus</Emphasis>)

The frosted elfin (Callophrys irus) is a localized and declining butterfly found in xeric open habitats maintained by disturbance. We described the effects of woody plant canopy cover, topography and host plant size and density on the quality of microhabitat of wild indigo (Baptisia tinctoria) host plants containing late instar frosted elfin larvae at four study sites in southeastern Massachusetts, United States. We also assessed whether females preferentially depositing eggs on host plants within specific microhabitats, therefore conferring greater survivorship to the larvae through the late-instar stage. We found that moderate amounts of canopy cover and large plant size characterized larvae-occupied host plants. In the absence of tree canopy cover, late instar larvae density remained low even when host plant density was high. However, females oviposited on wild indigo plants without regard to any of the vegetative or environmental variables we measured. These results indicate that canopy cover was an important characteristic of microhabitats containing late instar larvae, and late instar larvae occupancy was determined by suitable microhabitat conditions, and not female oviposition selection. Managing for canopy cover and microhabitat heterogeneity within relatively open habitats is recommended for the maintenance of frosted elfin populations.