国内外产业共生网络研究比较述评

产业共生网络是指基于物质及能量交换以及知识及基础设施共享而形成的在不同产业主体之间的合作共赢网络,是产业转型升级的重要保障。作为产业共生的运作方式,产业共生网络的研究国外从20世纪90年代开始从概念到实例就展开了一系列探讨,国内自2002年也开始在网络结构等方面开展相关研究。尤其在2008年以后,产业共生网络的研究方向不断拓宽,研究成果丰富多样。为明晰国内外产业共生网络研究的发展态势,促进产业共生网络理论体系的发展并使其得到有效应用。本文从共生网络内涵、结构、功能及评价、演化、管理调控等方面比较分析了国内外产业共生网络的研究进展,并对产业共生网络的发展前景做了展望。未来产业共生网络研究在不同尺度的比较及推演、数据信息平台的搭建以及产业共生网络演化模拟及管理调控的耦合等方面需重点关注。     

AM fungal communities inhabiting the roots of submerged aquatic plant <Emphasis Type="Italic">Lobelia dortmanna</Emphasis> are diverse and include a high proportion of novel taxa

While the arbuscular mycorrhizal (AM) symbiosis is known to be widespread in terrestrial ecosystems, there is growing evidence that aquatic plants also form the symbiosis. It has been suggested that symbiosis with AM fungi may represent an important adaptation for isoëtid plants growing on nutrient-poor sediments in oligotrophic lakes. In this study, we address AM fungal root colonization intensity, richness and community composition (based on small subunit (SSU) ribosomal RNA (rRNA) gene sequencing) in five populations of the isoëtid plant species Lobelia dortmanna inhabiting oligotrophic lakes in Southern Sweden. We found that the roots of L. dortmanna hosted rich AM fungal communities and about 15 % of the detected molecular taxa were previously unrecorded. AM fungal root colonization intensity and taxon richness varied along an environmental gradient, being higher in oligotrophic and lower in mesotrophic lakes. The overall phylogenetic structure of this aquatic fungal community differed from that described in terrestrial systems: The roots of L. dortmanna hosted more Archaeosporaceae and fewer Glomeraceae taxa than would be expected based on global data from terrestrial AM fungal communities.     

What has happened to the “aquatic phycomycetes” (sensu Sparrow)? Part I: A brief historical perspective

The “aquatic phycomycetes” constitute an ecologically and economically important assemblage of eukaryotic microorganisms, because they share many morphological traits and important ecological functions and they interact with each other in aquatic ecosystems. The last two decades of research have provided both molecular and structural evidence that the “aquatic phycomycetes” are a diverse, polyphyletic grouping and therefore not a valid taxonomic entity. Very little research has been conducted for many years with the “aquatic phycomycetes”, possibly because in general these microorganisms are often hard to isolate and maintain in most laboratory facilities, little background data has been available to identify the species, the studies were time consuming, the state of the art technology in many cases did not permit studies on these groups and they were thought to be economically and ecologically unimportant. However, this perception has changed recently. For example, some of these species (1) are now known to play important roles in biomass conversion and sequestration of CO₂, (2) are parasites of many fungal, plant and animal species, (3) may harbor genes of important enzymes for industrial applications and (4) can serve as indicator species for eco-tox monitoring. This review discusses the assemblages of microorganisms which Sparrow placed into the aquatic phycomycetes, their history in brief and their current phylogenetic placement.     

Biological monitoring of water quality in Australia: Workshop summary and future directions

Abstract Biological methods are widely accepted in water quality monitoring programmes worldwide; however, some concern remains over their effectiveness in predicting the effects of contaminants on aquatic ecosystems. While the so-called‘early warning’ approaches, such as bioassays and biomarkers, have been used in Australia to demonstrate mechanisms of toxic action and exposure to contaminants, as elsewhere, little attempt has been made to link observed effects at these lower levels of biological organization to real impacts on aquatic systems. The ecological consequences of exposure to contaminants is undoubtedly best studied at higher levels of biological organization (i. e. at the population or community level). However, monitoring aquatic communities is labour intensive and inadequate for the early detection of impacts. Research is needed to identify links between the bioassessment measures used, so that changes at the lowest biological level (e. g. using biomarkers and bioassays) can be translated into likely‘real’ impacts on the aquatic system, as measured at the population or community level. Monitoring the genetic structure of populations of aquatic organisms, particularly invertebrates, may provide a potential link between subtle effects observed in bioassay tests and subsequent changes in population density and/or community structure. A streamlined approach to monitoring changes at the community level needs to be developed to improve predictive ability and to make this approach more responsive to the early detection and prevention of unacceptable impacts. In addition, research on the use of ecosystem level parameters, such as production/respiration ratios or community metabolism, should be undertaken to determine their suitability for routine biomonitoring of water quality in Australian inland waters.     

The unique root-nodule symbiosis between Rhizobium and the aquatic legume,Neptunia natans (L. f.) Druce

We examined the development of the aquatic N₂-fixing symbiosis between Rhizobium sp. (itNeptunia) and roots of Neptunia natans L. f. (Druce) (previously N. oleracea Lour.) under natural and laboratory conditions. When grown in its native marsh habitat, this unusual aquatic legume does not develop root hairs, the primary sites of rhizobial infection for most temperate legumes. Under natural conditions, the aquatic plant floats and develops nitrogen-fixing nodules at emergence of lateral roots on the primary root and on adventitious roots at stem nodes, but not from the stem itself. Cytological studies using various microscopies revealed that the mode of root infection involved an intercellular route of entry followed by an intracellular route of dissemination within nodule cells. After colonizing the root surface, the bacteria entered the primary root cortex through natural wounds caused by splitting of the epidermis and emergence of young lateral roots, and then stimulated early development of nodules at the base of such roots. The bacteria entered the nodule through pockets between separated host cells, then spread deeper in the nodule through a narrower intercellular route, and eventually evoked the formation of infection threads that penetrated host cells and spread throughout the nodule tissue. Bacteria were released from infection droplets at unwalled ends of infection threads, became enveloped by peribacteroid membranes, and transformed into enlarged bacteroids within symbiosomes. In older nodules, the bacteria within symbiosomes were embedded in an unusual, extensive fibrillar matrix. Cross-inoculation tests of 18 isolates of rhizobia from nodules of N. natans revealed a host specificity enabling effective nodulation of this aquatic legume, with lesser affinity for Medicago sativa and Ornithopus sp., and an inability to nodulate several other crop legume species. Acetylene reduction (N₂ fixation) activity was detected in nodules of N. natans growing in aquatic habitats under natural conditions in Southern India. These studies indicate that a specific group of Rhizobium sp. (Neptunia) occupies a unique ecological niche in aquatic environments by entering into a N₂-fixing root-nodule symbiosis with Neptunia natans.We thank J. Whallon for technical assistance, G. Truchet, J. Vasse, S. Wagener, J. Beaman, F. DeBruijn, F. Ewers, and A. Squartini for helpful comments, and N.N. Prasad and G. Birla for assistance in conducting field observations. This work was supported by the Michigan Agricultural Experiment Station and National Science Foundation grants DIR-8809640 and BIR-9120006 awarded to the MSU Center for Microbial Ecology. This study is dedicated to the memory of Dr. Joseph C. Burton, a friend and colleague who made many contributions to the study of the Rhizobiumlegume symbiosis.     

云南武定中泥盆世晚期植物与腹足动物 共生标本的发现及其古生态意义

中泥盆世晚期陆生植物的演化已经达到相当高的水平,我国以云南中泥盆世晚期植物群为代表,称为Lepidodendropsis arborecense-Minarodendron cathaysiense-Eocladoxylou minutum (LME)组合。当前在云南武定中泥盆世晚期地层(西冲组上部)中发现的植物主要有Lepidodendropsis arborescense,Eocladoxylon minutu,Rhipidophyton acanthum等,其中,在R.acanthum的茎干基部密集共生有腹足动物Valvata sp.。根据植物表面无动物咬食痕迹,以及腹足动物生态特性和演化分析,当前陆生植物与水生动物共生的原因是植物茎干飘落水体后,为水生的腹足动物提供了新的栖息场所,并随水流、风浪载运至异地埋藏。这种水生腹足动物寄栖于水中物体的生活方式很普遍,是腹足动物迁徙、扩散的一种重要途径。     

Roles of bacteria in the bark beetle holobiont – how do they shape this forest pest?

Bark beetles are well‐known forest pests, some species inducing massive attacks on trees, resulting in the devastation of entire woodlands. Bark beetles are associated with microorganisms, forming an entity known as ‘holobiont’. Beetles and fungi are the best‐studied members of this multipartite symbiosis. However, recent studies have shown that bacteria may play important roles in the bark beetle holobiont, such as providing certain nutrients, promoting the growth of beneficial fungi, detoxifying the environment by lowering the levels of phenolic compounds synthesised by the host tree or by inhibiting the growth of antagonistic fungi whereas some bacterial symbionts have the potential to kill beetles under certain conditions. Therefore, bacteria probably greatly affect the life cycle of bark beetles; hence, more research is needed to clarify the extent to which a bacterial associate is implicated in a bacterial bark beetle symbiosis and how much it determines host's performance. This review summarises all of the known activities of bacteria present in the bark beetle holobiont, indicates some important gaps in the knowledge of this symbiosis and provides some guidance for overcoming the difficulties in investigating this relationship in future studies.     

Mixotrophy everywhere on land and in water: the grand écart hypothesis

There is increasing awareness that many terrestrial and aquatic organisms are not strictly heterotrophic or autotrophic but rather mixotrophic. Mixotrophy is an intermediate nutritional strategy, merging autotrophy and heterotrophy to acquire organic carbon and/or other elements, mainly N, P or Fe. We show that both terrestrial and aquatic mixotrophs fall into three categories, namely necrotrophic (where autotrophs prey on other organisms), biotrophic (where heterotrophs gain autotrophy by symbiosis) and absorbotrophic (where autotrophs take up environmental organic molecules). Here we discuss their physiological and ecological relevance since mixotrophy is found in virtually every ecosystem and occurs across the whole eukaryotic phylogeny, suggesting an evolutionary pressure towards mixotrophy. Ecosystem dynamics tend to separate light from non‐carbon nutrients (N and P resources): the biological pump and water stratification in aquatic ecosystems deplete non‐carbon nutrients from the photic zone, while terrestrial plant successions create a canopy layer with light but devoid of non‐carbon soil nutrients. In both aquatic and terrestrial environments organisms face a grand écart (dancer's splits, i.e., the need to reconcile two opposing needs) between optimal conditions for photosynthesis vs. gain of non‐carbon elements. We suggest that mixotrophy allows adaptation of organisms to such ubiquist environmental gradients, ultimately explaining why mixotrophic strategies are widespread.     

Did the first insects live in water or in air?

We evaluate the arguments and evidence for a terrestrial vs an aquatic origin for the Insecta. The evidence falls into three categories: (1) evidence that does not support one view more than the other; (2) speculative evidence, which should carry little weight; and (3) evidence that does support one view more than the other. Category 1 includes evidence from locomotory and osmoregulatory systems; plausible functions have been proposed for 'protowings' in both aquatic and terrestrial environments, while locomotory and osmoregulatory mechanisms of insects shed little light on their origins. Fossils, phylogenetic speculation, gill structure and life histories fall into category 2, in which, although speculative, the evidence favours a terrestrial origin. The earliest fossil hexapods were apparently terrestrial and unequivocally aquatic hexapods do not appear until 60–70 million years later, while sister-group relationships point to a terrestrial life style from at least the Hexapoda-Myriapoda stem group. The great variation in gill structure, even within orders, suggests convergence, and the more or less completely aquatic life histories are better interpreted as steps towards independence from land, rather than signs of an aquatic origin. Category 3 includes evidence from the tracheal system. In order to have evolved in water, a tracheal system must have first invaginated, then connected with the body wall for gas exchange with the water, and thirdly connected with the internal organs. It is difficult to envisage functions for the first two stages; on the other hand, the system could have readily evolved on land by invagination of respiratory surfaces, and then have been modified to effect gas exchange in water via gills.     

东风港滨岸缓冲带对水生生物群落结构的影响

选择苏州河的支流东风港为研究对象,选取其中一段人工建造滨岸缓冲带作为研究区,调查其水生生物群落并与对照区相比较,以具体说明滨岸缓冲带对水生生物群落结构的影响。通过对研究区与对照区内的浮游植物、浮游动物、底栖动物和大型水生植物的调查研究,结果显示,研究区浮游植物的种类数多于对照区,且以清水种占优势;浮游动物群落结构研究区明显比对照区复杂;底栖动物的种类数、密度和生物量研究区都多于对照区;另外研究区还有较为多样化的大型水生植物群落。这些都表明研究区的水生生物群落结构较对照区更为完善。说明滨岸缓冲带对提高水体生物多样性,完善水生生物群落结构具有较为明显的作用。     

“Uncovering” Industrial Symbiosis

Since 1989, efforts to understand the nature of interfirm resource sharing in the form of industrial symbiosis and to replicate in a deliberate way what was largely self‐organizing in Kalundborg, Denmark have followed many paths, some with much success and some with very little. This article provides a historical view of the motivations and means for pursuing industrial symbiosis—defined to include physical exchanges of materials, energy, water, and by‐products among diversified clusters of firms. It finds that “uncovering” existing symbioses has led to more sustainable industrial development than attempts to design and build eco‐industrial parks incorporating physical exchanges. By examining 15 proposed projects brought to national and international attention by the U.S. President's Council on Sustainable Development beginning in the early 1990s, and contrasting these with another 12 projects observed to share more elements of self‐organization, recommendations are offered to stimulate the identification and uncovering of already existing “kernels” of symbiosis. In addition, policies and practices are suggested to identify early‐stage precursors of potentially larger symbioses that can be nurtured and developed further. The article concludes that environmentally and economically desirable symbiotic exchanges are all around us and now we must shift our gaze to find and foster them.     

Nitrogen fixation mutants of Medicago truncatula fail to support plant and bacterial symbiotic gene expression

The Rhizobium-legume symbiosis culminates in the exchange of nutrients in the root nodule. Bacteria within the nodule reduce molecular nitrogen for plant use and plants provide bacteria with carbon-containing compounds. Following the initial signaling events that lead to plant infection, little is known about the plant requirements for establishment and maintenance of the symbiosis. We screened 44,000 M2 plants from fast neutron-irradiated Medicago truncatula seeds and isolated eight independent mutant lines that are defective in nitrogen fixation. The eight mutants are monogenic and represent seven complementation groups. To monitor bacterial status in mutant nodules, we assayed Sinorhizobium meliloti symbiosis gene promoters (nodF, exoY, bacA, and nifH) in the defective in nitrogen fixation mutants. Additionally, we used an Affymetrix oligonucleotide microarray to monitor gene expression changes in wild-type and three mutant plants during the nodulation process. These analyses suggest the mutants can be separated into three classes: one class that supports little to no nitrogen fixation and minimal bacterial expression of nifH; another class that supports no nitrogen fixation and minimal bacterial expression of nodF, bacA, and nifH; and a final class that supports low levels of both nitrogen fixation and bacterial nifH expression.     

The effects of temperature upon the toxicity of chemicals to aquatic organisms

Although rather extensive bibliographies give the impression that there is a vast amount of literature on the effects of temperature on aquatic organisms, when one tries to apply this information to specific interactions, such as the effects of temperature changes on chemical toxicity to aquatic organisms, often very little of the evidence is applicable. Although the most useful information on this relationship has been acquired in laboratory situations even this body of literature (which forms the bulk of this paper) is not adequate to make any scientifically justifiable generalizations. Field data on this relationship is almost non-existent and it is unlikely that much will become available unless specific studies are initiated which are directed toward this end. This is equally true of the laboratory information although it seems more likely that this will be generated as a spinoff from other research activities. In order to develop water quality management programs for steam-electric power plants one should understand the relationship between temperature and the response of aquatic organisms to toxic chemicals. Not only do some power plants discharge chlorine and other similar materials as well as heated waste water but those that discharge the latter only may be located near discharges of toxic chemicals. Since temperature and chemical stress to aquatic organisms are most commonly discussed independently we felt a paper covering this relationship would be useful.     

Typhloplanid flatworms (Mesostoma and related genera): Mechanisms of predation and evidence that they structure aquatic invertebrate communities

Mesostoma species and other typhloplanid flatworms are predators found in a wide variety of habitats. Laboratory observations of some Mesostoma spp found in shallow aquatic habitats (referred to as littoral species) have revealed a wide variety of prey killing mechanisms: 1) mucus trapping, 2) sit-and-wait predation, 3) releasing a toxin into the water, and 4) active searching. We review the existing literature on these mechanisms. We also describe for the first time the predatory behavior of a pelagic Mesostoma sp. found in Brazilian lakes.The existing literature is also reviewed to assess the potential impact of Mesostoma species and related genera on the aquatic invertebrate community. Mesostoma has a high potential for population increase and has been found in high densities in some shallow aquatic habitats. Single prey experiments show that a number of Mesostoma species feed heavily on mosquito larvae, some chironomid larvae and some daphnids but considerably less on most copepods and ostracods. Prey preference experiments reflect the same trends. Hence, these predation studies suggest that the flatworms, at high densities, should reduce populations of certain prey speces and, consequently, alter community structure. Field studies support this prediction. Mesostoma species, at high densities, appear to be important predators of mosquito larvae in shallow aquatic habitats even under conditions where high densities of planktivorous fishes had little impact. They also appear to alter zooplankton community structure. However, much of the field evidence is correlational and not experimental. No studies have assessed the impact of pelagic typhloplanids on zooplankton community structure.It is concluded that many more manipulative field experiments are needed to assess the impact of typhloplanids on aquatic invertebrate communities.     

Preface: Recent advances in Crustacean Genomics

Aquatic plants fulfil a wide range of ecological roles, and make a substantial contribution to the structure, function and service provision of aquatic ecosystems. Given their well-documented importance in aquatic ecosystems, research into aquatic plants continues to blossom. The 14th International Symposium on Aquatic Plants, held in Edinburgh in September 2015, brought together 120 delegates from 28 countries and six continents. This special issue of Hydrobiologia includes a select number of papers on aspects of aquatic plants, covering a wide range of species, systems and issues. In this paper, we present an overview of current trends and future directions in aquatic plant research in the early twenty first century. Our understanding of aquatic plant biology, the range of scientific issues being addressed and the range of techniques available to researchers have all arguably never been greater; however, substantial challenges exist to the conservation and management of both aquatic plants and the ecosystems in which they are found. The range of countries and continents represented by conference delegates and authors of papers in the special issue illustrates the global relevance of aquatic plant research in the early twenty first century but also the many challenges that this burgeoning scientific discipline must address.     

Taxonomic status ofAnabaena azollae: An overview

Despite the long-standing and widespread use of the symbiotic association between the aquatic fern Azolla and its cyanobacterial symbiontAnabaena azollae to augment nitrogen supplies in rice paddy soils, very little is known about taxonomic aspects of the symbiosis. The two partners normally remain associated throughout vegetative and reproductive development, limiting the opportunities for interchanges. We have used monoclonal antibodies and DNA/DNA hybridization techniques to show that the cyanobacterial partner is not uniform throughout the genus Azolla, and that substantial diversification has occurred. With these procedures it will be possible to characterize genotypes of the cyanobacterium and to monitor experiments aimed at synthesizing new combinations ofAzolla species andAnabaena azollae strains.     

Pink salmon distribution in Sweden: The calm before the storm?

Pink salmon distribution has recently expanded substantially across northern Europe. On the Swedish west coast, relatively few pink salmon have been observed to date; nonetheless, a notable rise in 2021 (70 observations). However, with no national monitoring together with a ceased Atlantic salmon commercial fishery, there is little opportunity to understand the extent of the spread in this region. Here, we present the current data and address the need for future monitoring and research in order to understand the potential impacts of this invasive species in Sweden''s aquatic ecosystems.     

网络分析在宿主植物与菌根真菌共生关系研究中的应用

菌根共生体是生物界最广泛的互惠共生体,共生关系多样性是生物多样性的重要组成部分,当前群落尺度菌根共生关系研究才刚刚起步,但发展迅速。网络分析作为生态学研究的重要手段逐渐在菌根共生关系中得以应用,网络分析为群落尺度探究菌根真菌多样性分布规律、共生机制研究提供新观点和途径,对菌根真菌群落结构、生态功能研究具有重要意义。本文总结了网络分析方法在单点式、双点式和多点式菌根共生关系网络研究中的优势和局限性,同时还阐述了零模型选择和构建网络大小对关系网络度量指数的影响,为菌根真菌群落结构、生态功能研究提供新思路,为后续群落尺度菌根共生关系格局研究提供借鉴。     

Ecophysiological traits of terrestrial and aquatic carnivorous plants: are the costs and benefits the same?

Identification of tradeoffs among physiological and morphological traits and their use in cost–benefit models and ecological or evolutionary optimization arguments have been hallmarks of ecological analysis for at least 50 years. Carnivorous plants are model systems for studying a wide range of ecophysiological and ecological processes and the application of a cost–benefit model for the evolution of carnivory by plants has provided many novel insights into trait‐based cost–benefit models. Central to the cost–benefit model for the evolution of botanical carnivory is the relationship between nutrients and photosynthesis; of primary interest is how carnivorous plants efficiently obtain scarce nutrients that are supplied primarily in organic form as prey, digest and mineralize them so that they can be readily used, and allocate them to immediate versus future needs. Most carnivorous plants are terrestrial – they are rooted in sandy or peaty wetland soils – and most studies of cost–benefit tradeoffs in carnivorous plants are based on terrestrial carnivorous plants. However approximately 10% of carnivorous plants are unrooted aquatic plants. Here we ask whether the cost–benefit model applies equally well to aquatic carnivorous plants and what general insights into tradeoff models are gained by this comparison. Nutrient limitation is more pronounced in terrestrial carnivorous plants, which also have much lower growth rates and much higher ratios of dark respiration to photosynthetic rates than aquatic carnivorous plants. Phylogenetic constraints on ecophysiological tradeoffs among carnivorous plants remain unexplored. Despite differences in detail, the general cost–benefit framework continues to be of great utility in understanding the evolutionary ecology of carnivorous plants. We provide a research agenda that if implemented would further our understanding of ecophysiological tradeoffs in carnivorous plants and also would provide broader insights into similarities and differences between aquatic and terrestrial plants of all types.     

Host–microbial symbiosis in the mammalian intestine: exploring an internal ecosystem

The mammalian intestine contains a complex, dynamic, and spatially diversified society of nonpathogenic bacteria. Very little is known about the factors that help establish host-microbial symbiosis in this open ecosystem. By introducing single genetically manipulatable components of the microflora into germfree mice, simplified model systems have been created that will allow conversations between host and microbe to be heard and understood. Other paradigms of host–microbial symbiosis suggest that these interactions will involve an exchange of biochemical signals between host and symbionts as well as among the bacteria themselves. The integration of molecular microbiology, cell biology, and gnotobiology should provide new insights about how we adapt to a microbial world and reveal the roles played by our indigenous ‘nonpathogenic’ flora. BioEssays 20 :336-343, 1998. © 1998 John Wiley & Sons, Inc.