RAPD marker estimation of genetic structure among isolated northern leopard frog populations in the south-western USA

Amphibians in the south-western United States are currently experiencing population declines. Causal explanations for these population changes as well as the implementation of sound management practices requires an understanding of the genetic structure of natural amphibian populations. To this end, we estimated genetic differences within and among seven isolated populations of northern leopard frogs, Rana pipiens , from Arizona and southern Utah using random amplified polymorphic DNA (RAPD) analyses. Fourteen arbitrarily designed primers detected 38 polymorphic loci in 85 individual frogs. Three types of population structure were observed in this study. (i) Two populations showed low genetic diversity ( D = 0.10 and 0.04) and may have been established by relatively recent events. (ii) Two were not genetically distinct and exhibited a high degree of within-population diversity ( D = 0.35). The possibility of gene flow between these populations is high due to their geographical proximity and their shared genetic structure. (iii) Three populations were genetically distinct from each other and the other populations, and exhibited intermediate within-population variation ( D = 0.19, 0.17, 0.14). Genetic distances among the seven populations ranged from 0.00 to 0.20, suggesting that some of these leopard frog populations are genetically distinct. Although based on relatively small samples, these data suggest that leopard frog populations in the south-west are likely to represent unique genetic entities worthy of conservation. The management implications of these results are that isolated leopard frog populations should be evaluated on an individual basis to best preserve them.     

What spatial data do we need to develop global mammal conservation strategies?

Spatial data on species distributions are available in two main forms, point locations and distribution maps (polygon ranges and grids). The first are often temporally and spatially biased, and too discontinuous, to be useful (untransformed) in spatial analyses. A variety of modelling approaches are used to transform point locations into maps. We discuss the attributes that point location data and distribution maps must satisfy in order to be useful in conservation planning. We recommend that before point location data are used to produce and/or evaluate distribution models, the dataset should be assessed under a set of criteria, including sample size, age of data, environmental/geographical coverage, independence, accuracy, time relevance and (often forgotten) representation of areas of permanent and natural presence of the species. Distribution maps must satisfy additional attributes if used for conservation analyses and strategies, including minimizing commission and omission errors, credibility of the source/assessors and availability for public screening. We review currently available databases for mammals globally and show that they are highly variable in complying with these attributes. The heterogeneity and weakness of spatial data seriously constrain their utility to global and also sub-global scale conservation analyses.     

The savannization of moist forests in the Sierra Nevada de Santa Marta, Colombia

In the Rio Ranchería watershed of the Sierra Nevada de Santa Marta, between 500 and 1500 m, savanna vegetation is interspersed with moist forests. The savannas are composed of native savanna grasses like Aristida adscensionis L., Arundinella sp., Panicum olyroides Kunth, and Schyzachyrium microstachyum (Desv.) Roseng., Arrill & Izag and the African Melinis minutiflora P. Beauv. There is also Curatella americana L. and Byrsonima crassifolia (L.) H.B.K., two typical tree species of the neotropical savannas. Although moist forest patches occur more often on lower slopes and narrow valley bottoms, they can also be found on mid- and upper-slopes and less often on ridges. Thus, these forest patches are not gallery forests as are found throughout the neotropics, but the result of deforestation and fractionation of a continuous forest. A comparison of soil profiles between the savannas and remnant forest patches on the same slope, showed the disappearance of the A and B horizons (approx. 50 cm) under savanna vegetation. The sharp difference between the savanna and forest soils at the Rio Ranchería does not appear to be due to a change in soil water status along a toposequence or differences in the underlying bedrock. We hypothesize that the savannas of the Rio Ranchería watershed, are the result of deforestation and land practices on infertile soils derived from granite. The savannization process was likely initiated by Amerindians by means of the frequent use of fire or clearing lands for the cultivation of maize. The introduction of cattle by Spaniards (c. 1530) and the frequent use of fire to maintain grazing fields, contributed to further degradation of the habitat. While some tropical landscapes recovered their forest cover when human pressure was removed approximately 500 years ago, areas such as the Rio Ranchería watershed have suffered permanent damage. The savannas of this region are likely to remain unless fire is suppressed and soil restoration practices implemented.     

Foraging behaviour in tadpoles of the bronze frog<Emphasis Type="Italic">Rana temporalis</Emphasis>: Experimental evidence for the ideal free distribution

The ability of bronze frogRana temporalis tadpoles (pure or mixed parental lines) to assess the profitability of food habitats and distribute themselves accordingly was tested experimentally using a rectangular choice tank with a non-continuous input design. Food (boiled spinach) was placed at two opposite ends of the choice tank in a desired ratio (1:1, 1:2 or 1:4) to create habitat A and B. The tadpoles in Gosner stage 28–33, pre-starved for 24 h, were introduced in an open ended mesh cylinder placed in the center of the choice tank, held for 4 min (for acclimation) and then released to allow free movement and habitat selection. The number of tadpoles foraging at each habitat was recorded at 10, 15, 20, 25 and 30 min time intervals. The actual suitability,S _i (the food available in a habitat after colonization of tadpoles) of each habitat was obtained from the equationS _i =B _i−f _i (d _i) whereB _i is basic suitability (amount of food provided at each habitat before release of tadpoles),f _i is the rate of depletion of food (lowering effect) with introduction of each tadpole, andd _i is the density of tadpoles in habitati. The expected number of tadpoles at each habitat was derived from the actual suitability. With no food in the choice tank, movement of the tadpoles in the test arena was random indicating no bias towards any end of the choice tank or the procedure. In tests with a 1:1 food ratio, the observed ratio of tadpoles (11.71: 12.28) was comparable with the expected 12:12 ratio. The observed number of tadpoles in the habitats with a 1:2 food ratio was 8.71:15.29 and 7.87:16.13 for pure and mixed parental lines respectively. In both cases, the observed ratios were close to the expected values (7:17). Likewise, in experiments with a 1:4 food ratio, the observed number of tadpoles in the two habitats (10.78:37.22) did not differ significantly from the expected ratio of 7:41. In all tests, the number ofR. temporalis tadpoles matched ideally with habitat profitability (undermatching indexK ≜ 1. The study shows that tadpoles of the bronze frog exhibit an ideal free distribution while foraging regardless of whether they are siblings or non-siblings in a group, which correlates well with their group living strategy in nature.     

基于简化基因组测序揭示水角的濒危机制

物种的遗传多样性是决定物种适应性和生存能力的关键因素.生境片段化是造成生物多样性丧失的重要因素之一,对植物种群的遗传多样性有着重要影响.水角(Hydrocera triflora)作为一种濒危植物,其遗传多样性状况和濒危机制尚未有报道.该文收集了水角 7 个种群共计 34 个样本,利用简化基因组测序技术(RAD-seq)获得了单核苷酸变异位点(SNP).通过种群遗传多样性和遗传结构的分析,并结合种群历史动态分析和不同气候情景下物种潜在分布区预测,探讨了水角的濒危机制.结果表明:(1)水角遗传多样性较低(Ho=0.1569、He=0.1654、π=0.1865),遗传分化系数较高;AMOVA分析表明,遗传变异主要发生在种群内.(2)Mantel检测表明环境距离与遗传距离、地理距离均呈显著正相关,分别为P=0.0412 和P= 0.0082.(3)水角的有效种群大小从全新世中期开始持续下降,与琼北火山群的喷发时间一致.(4)与当代气候相比,虽然在未来气候变化下水角的潜在分布区总面积变动不大,但在高CO2排放的情景下,大量的高适生区将会丧失并转化为低适生区,特别是位于马来群岛的适生区几乎完全消失.该研究结果表明,生境片段化导致了水角较低的遗传多样性和有效种群大小的持续下降.因此,自身更新能力低以及人为活动干扰、城市化等不利的环境条件是导致其濒危的主要原因.建议加强对水角的就地保护,采用人工授粉等方法提高其基因流以增加其种群的遗传多样性,同时,要着重保护湿地免遭破坏.