A simple method of the preparation of 2′-O-Methyladenosine Methylation of adenosine with methyl iodide in anhydrous alkaline medium

A simple and effective method of the methylation on the 2′-O position of adenosine is described. Adenosine is treated with CH₃I in an anhydrous alkaline medium at 0°C for 4 h. The major products of this reaction are monomethylated adenosine at either the 2′-O or 3′-O position (total of 64%) and the side products are dimethylated adenosine (2′,3′-O-dimethyladenosi, 21%, and N⁶-2′-O-dimethyladenosine, 11%). The ratio of 2′-O- and 3′-O-methyladenosine has been found to be 8 to 1. Therefore, this reaction preferentially favors the synthesis of 2′-O-methyladenosine. The monomethylated adenosine is isolated from reaction mixture by a silica gel column chromatography. Then the pure 2′-O-methyladenosine can be separated by crystallization in ethanol from the mixture of 2′-O and 3′-O-methylated isomers. The overall yield of 2′-O-methyladenosine is 42%.     

Characterization of alkaline-degradation products of some 3,4-di- and 3,4,6-tri-methyl ethers of hexoses by G.L.C.-mass spectrometry of O-trimethylsilyl derivatives

G.l.c.-mass spectrometry has been used to provide information on the O-trimethylsilyl derivatives of the products of alkaline degradation of 3,4-di- and 3,4,6-tri-O-methyl-D-glucose, and 3,4,6-tri-O-methyl-D-galactose. During reaction with sodium hydroxide-sodium borohydride mixtures, reduction occurs more rapidly than β-elimination and the only detectable products were the corresponding alditols and the epimeric 3-deoxyalditols. Extended reaction with sodium hydroxide alone, followed by treatment with sodium borohydride, gives mixtures of aldonic acids including the epimeric 3-deoxy-4-O-methylaldonic acids (metasaccharinic acids), 3-deoxyaldonic acids (with loss of the 4-O-methyl substituent), and 3,4-dideoxy-aldonic acids. Possible reaction-pathways are discussed.     

Hydroxyl radical formation via iron-mediated Fenton chemistry is inhibited by methylated catechols

The differing effects of O-methylated catecholamines and their dihydroxyphenyl precursors on the production of ^?OH were quantified using a previously established specific salicylate hydroxylation assay in conjunction with a sensitive electrochemical detection system. The production of ^?OH by the Fenton reaction was diminished significantly by O-methylated catecholamines (O-methyldopa, O-methyldopamine, O-methyltyrosine, and N-acetyl-O-methyldopamine), whereas radical production was augmented by dihydroxyphenyls (DOPA, dopamine, and N-acetyldopamine), including those with methylated side chains (N-methyldopamine and α-methyldopa). Monohydroxyphenyls such as octopamine, tyramine, tyrosine, and α-methyltyrosine had little or no effect on radical production. These data show that a methyl group positioned on the side chain of a catecholamine does not alter its pro-oxidant behavior, while a methyl group positioned on the aromatic ring renders the catecholamine sterically or kinetically unfavorable for coordination with transition metals, thus preventing the promotion of Fenton chemistry. These results highlight the importance of O-methylation in forming catechols that are less reactive than their dihydroxyphenyl precursors. Thus, factors regulating the methylation of brain catecholamines may play a crucial role in mediating neuronal integrity during aging and in the pathogenesis of certain neurodegenerative disorders. Competitive side-chain methylation reactions may sustain or perpetuate some dihydroxyphenyls, creating an oxidatively less favorable environment for cells than would result from compounds formed by O-methylation.     

Chemoenzymatic synthesis of C8-modified sialic acids and related α2-3- and α2-6-linked sialosides

Naturally occurring 8-O-methylated sialic acids, including 8-O-methyl-N-acetylneuraminic acid and 8-O-methyl-N-glycolylneuraminic acid, along with 8-O-methyl-2-keto-3-deoxy-d-glycero-d-galacto-nonulosonic acid (Kdn8Me) and 8-deoxy-Kdn were synthesized from corresponding 5-O-modified six-carbon monosaccharides and pyruvate using a sialic acid aldolase cloned from Pasteurella multocida strain P-1059 (PmNanA). In addition, α2-3- and α2-6-linked sialyltrisaccharides containing Neu5Ac8Me and Kdn8Deoxy were also synthesized using a one-pot multienzyme approach. The strategy reported here provides an efficient approach to produce glycans containing various C8-modified sialic acids for biological evaluations.     

Sequence analysis of small amounts of nonradioactive oligoribonucleotides containing ribose-methylated nucleosides by a combination of 3H- and 32P-labeling techniques

The oligonucleotides A-G-A-Cm-U and Gm-A-A-Y-A-ψ were used as model compounds to demonstrate how the complete nucleotide sequence of small amounts of nonradioactive oligoribonucleotides (0.2–0.3 nmol) can be derived by a combination of ³H-labeling procedures previously published and a new method for the characterization of 2′-O-methylated nucleosides based on enzymatic ³²P labeling. The newly developed method for the identification of ribose-methylated nucleosides entails ³²P labeling by [γ-³²P]ATP/polynucleotide kinase of the 5′-terminus of a ribonuclease T₂-stable 2′-O-methylated dinucleotide derived from the polyribonucleotide, conversion of the labeled dinucleotide to the ³²P-labeled 2′-O-methylated nucleoside 5′-monophosphate, and identification of the monophosphate by its chromatographic properties on a polyethyleneimine-cellulose thin layer. The novel method is simple, fast, and sensitive and, at present, represents the only way by which ribose-methylated nucleosides can be analyzed in small amounts (0.01 nmol) of nonradioactive oligonculeotides or RNA.     

Deamination of 2-amino-2-deoxyhexitols and of their per-O-methylated derivatives with nitrous acid

The products of nitrous acid deamination of per-O-methylated 2-amino-2-deoxy-d-glucitol and $\text{2-}\text{amino}\text{-2-}\text{deoxy}\text{-3-O-β-}\text{d}\text{-galactopyranosyl-}\text{d}\text{-glucitol}$ and its per-O-methylated derivative have been characterized by g.l.c.—mass spectrometry after treatment with sodium borodeuteride and further substitution by acetylation, methylation, or (trideuteriomethyl)ation. The results confirm that the most important reaction pathway (1) involves a 1 → 2-hydride shift to give $\text{2-}\text{deoxy-}\text{d}\text{-arabino-}\text{hexoses}$, but that significant side-reactions include (2) solvolytic displacement at C-2, (3) a 3 → 2-hydride shift, to give $\text{2-}\text{deoxy-}\text{d}\text{-erythro-3-}\text{hexuloses}$, and (4) a C-4→C-2 migration to give $\text{2-}\text{deoxy}\text{-2-C-}\text{(hydroxymethyl)-}\text{d}\text{-ribose}$ and -d-arabinose. Reactions (3) and (4) result in elimination of the original 3-O-substituents, with the exposure of new reducing groups, from oligosaccharides terminated by 3-O-substituted 2-amino-2-deoxyhexitols.     

Assignment of ring size in isopropylidene acetals by carbon-13 n.m.r. spectroscopy

A series of 1-O-acylaldose derivatives was prepared in good yield through the reaction of 1,3-dialkyl-O-glycosylpseudoureas with carboxylic acids.     

Tert-butanolysis of lichen depsides

The scope and limit of the tert-butanolysis of 12 lichen depsides is described. Neither 2-O-methylated nor 2-O-acetylated compounds are cleaved by heating with tert-butanol.     

Oxazoline synthesis of 1,2-trans-2-acetamido-2-deoxyglycosides. Glycosylation with 2-methyl-(3,4,6-tri-O-acetyl-1,2-dideoxy-α-D-galactopyrano)-[2′,1′:4,5]-2-oxazoline

The glycosylating activity of 2-methyl-(3,4,6-tri-O-acetyl-1,2-dideoxy-α-D-galactopyrano)-[2′,1′:4,5]-2-oxazoline has been tested in reaction with partially protected saccharides having free primary or secondary hydroxyl groups or with hydroxy amino acids. 3-O-(2-Acetamido-3,4,6-tri-O-acetyl-2-deoxy-β-D-galactopyranosyl)-N-benzyloxycarbonyl-L-serine benzyl ester (3), 6-O-(2-acetamido-2-deoxy-β-D-galactopyranosyl)-D-galactopyranose (5), p-nitrophenyl 2-acetamido-6-O-(2-acetamido-2-deoxy-β-D-galactopyranosyl)-2-deoxy-β-D-glucopyranoside (7), 6-O-(2-acetamido-2-deoxy-β-D-galactopyranosyl)-D-glucose (9), and 3-O-(2-acetamido-2-deoxy-β-D-galactopyranosyl)-D-glucose (11) were synthesized in high yield.     

Indole-, imidazole- and phenyl-alkylamines in the skin of one hundred and forty american amphibian species other than bufonids

• 1.1. Extracts prepared from dried or fresh skins of 140 American amphibian species, other than bufonids, were subjected to chemical and biological screening in order to determine the presence and concentrations of aromatic biogenic amines.
• 2.2. The most frequent and abundantly occurring amine category was that of indolealkylamines, represented by their prototype 5-hydroxytryptamine and its N-methylated derivatives. Conjugated and cyclized indolealkylamines, typical for the toad skin, were apparently lacking.
• 3.3. Phenylalkylamines were represented by two quaternary ammonium bases: leptodactyline and, very rarely, candicine. Leptodactyline was particularly abundant in leptodactylid frogs of the genus Leptodactylus.
• 4.4. Histamine occurred in trace amounts in different species, in large amounts only in some Leptodactylus species of the “pachypus” section. On the other hand, N-methylated histamines and cyclized histamines (spinaceamines) were confined to the skin of Leptodactylus pentadactylus labyrinthicus.
• 5.5. The possible taxonomical and evolutionary significance of amphibian skin amines is pointed out.

     

Nitrous acid deamination of methylated amino-oligosaccharide glycosides

G.l.c.-mass spectrometry has been used to characterize the products of N-deacetylation-nitrous acid deamination of per-O-methylated derivatives (8–11) of methyl 2-acetamido-2-deoxy-3-O-β-D-galactopyranosyl-α-D-glucopyranoside(1), methyl (2) and benzyl (3) 2-acetamido-2-deoxy-4-O-β-D-galactopyranosyl-β-D-glucopyranosides, and methyl 2-acetamido-2-deoxy-6-O-β-D-galactopyranosyl-α-D-glucopyranoside (4). 2,5-Anhydrohexoses have been converted into alditol trideuteriomethyl ethers, alditol acetates, and aldononitriles. The importance of side reactions that lead to the formation of 2-deoxy-2-C-formylpentofuranosides is discussed.     

Metabolic stability and inhibitory effect of O-methylated theaflavins on H2O2-induced oxidative damage in human HepG2 cells

Seven new O-methylated theaflavins (TFs) were synthesized by using O-methyltransferase from an edible mushroom. Using TFs and O-methylated TFs, metabolic stability in pooled human liver S9 fractions and inhibitory effect on H₂O₂-induced oxidative damage in human HepG2 cells were investigated. In O-methylation of theaflavin 3′-O-gallate (TF3′G), metabolic stability was potentiated by an increase in the number of introduced methyl groups. O-methylation of TF3,3′G did not affect metabolic stability, which was likely because of a remaining 3-O-galloyl group. The inhibitory effect on oxidative damage was assessed by measuring the viability of H₂O₂-damaged HepG2 cells treated with TFs and O-methylated TFs. TF3,3′G and O-methylated TFs increased cell viabilities significantly compared with DMSO, which was the compound vehicle (p?<?0.05), and improved to approximately 100%. Only TF3′G did not significantly increase cell viability. It was suggested that the inhibitory effect on H₂O₂-induced oxidative damage was potentiated by O-methylation or O-galloylation of TFs.     

Depolymerization of heparin with diazomethane. Structure of N,O-methylated,even-numbered oligosaccharides produced by β-eliminative cleavage of the 2-amino-2-deoxyglycosylic linkage

The long-period reaction of heparin with excess diazomethane at 20° resulted in cleavage at the β-position of the uronic acid carboxyl group to give a mixture of methyl α- and β-glycosides of N,O-methylated di-, tetra-, and hexa-saccharides having a 4,5-unsaturated uronic acid, nonreducing end-group. The major disaccharides obtained were methyl O-(4-deoxy-3-O-methyl-α-l-threo-hex-4-enopyranosyluronic acid 2-sulfate)-(1→4)-2-deoxy-3-O-methyl-2-(N-methylsulfoamino)-α- and -β-d-glucopyranoside. The reaction of heparin at 4° yielded a mixture of methylated, higher-molecular-weight oligosaccharides, which retained some affinity for antithrombin III-Sepharose.     

Brassinolide-2,3-acetonide: A brassinolide-induced rice lamina joint inclination antagonist

A novel chemical tool compound that is an antagonist of brassinolide (BL, 1)-induced rice lamina joint inclination was developed. Although 2-O-, 3-O-, 22-O-, or 23-O-methylation of BL causes a critical decrease in biological activity,⁵ a crystal structure of the extracellular leucine-rich repeat (LRR) domain of BRASSINOSTEROID-INSENSITIVE I (BRI1) bound to BL3, 4 indicates that the loss of activity of the O-methylated BL may result from not only the low affinity to BRI1, but also from blocking the interaction with another BR signaling factor, a partner protein of BRI1 (e.g., BRI1-ASSOCIATED KINASE 1, BAK1). On the basis of this hypothesis we synthesized the BL 2,3-acetonide 2, the 22,23-acetonide 3, and the 2,3:22,23-diacetonide 4 to assess the possibility of 2-O- and 3-O- or/and 22-O- and 23-O-alkylated BL as an antagonist in BR signaling evoked by exogenously applied BL. The 2,3-acetonide 2 more strongly inhibited the lamina inclination caused by BL relative to the 22,23-acetonide 3, whereas the diacetonide 4 had no effect most likely due to its increased hydrophobicity. This suggested that the 2,3-hydroxyl groups of BL play a more significant role in the interaction with a BRI1 partner protein rather than BRI1 itself in rice lamina joint inclination. Taken together it was demonstrated that BL, the most potent agonist of BRI1, is transformed into an antagonist by functionalization of the 2,3-dihydroxyl groups as the acetonide. This finding opens the door to the potential development of a chemical tool that modulates protein–protein interactions in the BR signaling pathway to dissect the BR-dependent processes.     

Synthesis and properties of 2,3,4,6-tetra-O-benzyl-1-O-(N-benzyloxycarbonyldipeptidyl)-α- and -β-D-glucopyranoses and 1-O-dipeptidyl-D-glucopyranoses. Piperazinedione formation from 1-O-dipeptidyl-D-glucopyranoses by intramolecular aminolysis

2,3,4,6-Tetra-O-benzyl-1-O-(N-benzyloxycarbonyldipeptidyl)-D-glucopyranoses (1–5) were synthesized from 2,3,4,6-tetra-O-benzyl-α-D-glucopyranose and pentachlorophenyl esters of N-benzyloxycarbonyldipeptides in the presence of imidazole; the anomeric mixtures were resolved and the α and β anomers were characterized. Catalytic hydrogenation of the β anomers of 1–3, having aglycon groups containing aliphatic amino acid residues, afforded the corresponding 1-O-dipeptidyl-β-D-glucopyranoses, which were characterized as the mono-oxalates 6–8; 6 and 7 were converted into the N-acetyl derivatives 9 and 10, which were also prepared by definitive methods. Hydrogenolysis of the β anomers of 4 and 5, having aglycon groups containing Phe-Gly and Gly-Phe residues, led to intramolecular aminolysis with scission of the glycosidic ester bond to give 3-benzylpiperazine-2,5-dione and D-glucose. Selective N-deprotection of 5β afforded 2,3,4,6-tetra-O-benzyl-1-O-(glycyl-DL-phenylalanyl)-β-D-glucopyranose (13β), and complete deprotection of 5α gave 1-O-(glycyl-DL-phenylalanyl)-α-D-glucopyranose (14) as the preponderant products; in both cases, intramolecular cyclisation of the aglycon group was a minor reaction. The results suggest that the balance between the formation of free D-glucosyl ester and the respective piperazinedione derivative depends primarily upon the nature and the sequence of the amino acids involved, and to a lesser extent upon the nature of substituents and the anomeric configuration of the sugar component.     

Structural characterization of oligosaccharides isolated from the pectic polysaccharide rhamnogalacturonan II

Rhamnogalacturonan II (RG-II) is a structurally complex pectic (d-galactosyl-uronic acid-rich) polysaccharide that is present in the primary (growing) cell-walls of higher plants. RG-II is composed of ∼60 glycosyl residues. The isolation and structural characterization of 23 oligosaccharide fragments of the residue of RG-II that remained after removal of hepta- and di-saccharides by partial hydrolysis with acid are reported. In order to obtain the oligosaccharide fragments characterized herein, the carboxyl groups of RG-II were dideuterio-reduced, and the carboxyl-reduced polysaccharide was per-O-methylated. The per-O-methylated polysaccharide was fragmented by partial hydrolysis with acid, producing partially O-methylated oligosaccharides. These derivatized oligosaccharides were reduced, to afford a mixture of partially O-methylated oligoglycosyl-alditols, which was then per-O-methylated. The structures of the resulting per-O-methylated oligoglycosylalditols were determined by chemical-ionization mass spectrometry, electron-impact mass spectrometry, fast-atom-bombardment mass spectrometry, ¹H-n.m.r. spectroscopy, and analysis of corresponding, partially O-acetylated, partially O-methylated alditols. Seventeen of the oligosaccharides isolated from RG-II were parts of a single heptasaccharide, namely.     

A rapid procedure to determine the content of 2'-O-methylation in RNA by homochromatography

The content of 2′-O-methylated dinucleotides from 17 S rRNA of yeast and 18 S rRNAs of chicken cells and Novikoff rat cells was determined by a new procedure using homochromatography. The procedure is simple and can be used to compare the extent of 2′-O-methylation simultaneously in various RNAs. It was of interest that 18 S rRNAs of chicken and rat have two times more 2′-O-methylated dinucleotides as compared to yeast 17 S rRNA.     

A quantitative method to determine the points of O-(2-hydroxypropyl) substitution in O-(2-hydroxypropyl)-guar

A method is described for locating the O-(2-hydroxypropyl) groups in O-(2-hydroxypropyl)-substituted guar. Per-O-methylation of the O-(2-hydroxypropyl)guar yielded guar that was partially O-methylated and partially O-(2-methoxypropyl)ated. This polymer was hydrolyzed, to afford a mixture of partially O-methylated monosaccharides and partially O-(2-methoxypropylated), partially O-methylated monosaccharides. These monosaccharide derivatives were reduced, and the alditols acetylated, to give a mixture of partially O-acetylated, partially O-methylated alditols with partially O-acetylated, partially O-(2-methoxypropyl)ated, partially O-methylated alditols. These alditol derivatives were identified by gas-liquid chromatography-mass spectrometry, and quantitated by gas-liquid chromatography.     

Synthesis of a series of fully methylated aldobiouronic acids,and β-elimination reactions of their synthetic precursors

Treatment of methyl 2,3,4-tri-O-acetyl-l-bromo-l-deoxy-α-d-glucopyranuronate severally with 2,4,6-, 2,3,6-, and 2,3,4-tri-O-methyl derivatives of methyl α-d-glucopyranoside and with methyl 4,6-O-benzylidene-3-O-methyl-α-d-glucopyranoside, in the presence of silver carbonate, afforded crystalline aldobiouronic acid derivatives in high yield. Deacetylation followed by methylation gave a series of fully methylated derivatives of laminaribiouronic, cellobiouronic, and gentiobiouronic acids, and the (1 → 2)-linked analogue. Methylation with methyl iodide and silver oxide in N,N-dimethylformamide was invariably accompanied by a small amount ofβ-elimination, with the formation of olefinic disaccharides which were also obtained by β-elimination reactions of the precursor acetates followed by methylation. Methyl 4,5-unsaturated 4-deoxyhexopyranosyluronate derivatives were the main products of the reaction, but these underwent further degradation with cleavage of the interglycosidic linkage and formation of 6-methoxycarbonyl-4-pyrone.     

Flavonoids of Balsamorhiza deltoidea and Wyethia mollis

Eleven O-methylated derivatives of kaempferol, quercetin and quercetagetin were isolated from the dichloromethane leaf-wash of Balsamorhiza deltoidea. Four of these compounds represent new reports from either Balsamorhiza or Wyethia: 6-hydroxykaempferol 7-O-methyl ether, quercetin 3′,4′-O-dimethylether, quercetagetin 7-O-methyl ether, and quercetagetin 3,6,7-O-trimethyl ether. We also confirmed the presence of two isoflavones, santal and orobol 3′-O-methyl ether, in W. mollis. The 8-C-prenylated derivatives of naringenin, eriodictyol, and dihydroisorhamnetin were also identified as constituents of W. mollis. The vacuolar flavonoid fraction of Balsamorhiza deltoidea and Wyethia helenioides was shown to consist of simple mono and diglycosides of kaempferol and quercetin.