Fractionation of yeast invertase isozymes and determination of enzymatic activity in sodium dodecyl sulfate-polyacrylamide gels

Three invertase isozymes extracted from derepressed yeast cell membranes with 1% deoxycholate (0.5 mg/mg protein) were separated on sodium dodecyl sulfate (0.25%)-polyacrylamide gels (Babczinski, P., and Tanner, W., 1978, Biochim. Biophys. Acta538, 426–434; Babczinski, P., 1980, Biochim. Biophys. Acta, in press). A dye-producing method for the location of isozymes after gel electrophoresis has been developed by using a coupled enzymatic reaction including the formazan reaction. By the incorporation of β-d-glucose dehydrogenase as the d-glucose-utilizing auxiliary enzyme into the test system the problem of contaminating sucrase activities in commercial glucose oxidase preparations has been overcome (the latter enzyme had often been used earlier in activity-staining procedures of glycosidases). Production of formazan dye is dependent on the presence of sucrose in the test system. By quantitative densitometry proportionality of dye intensity with incubation time, amount of deoxycholate extract, and amount of protein applied onto the gel were determined.     

A simple micro-assay for inorganic phosphate

Modification of two assay procedures (Van Belle, H. (1970) Anal. Biochem.33, 132–142 and Itaya, K., and Ui, M. (1966) Clin. Chim. Acta14, 361) has allowed the development of a manual assay for inorganic phosphate of high simplicity and sensitivity. Total analysis requires only three reagents and is accomplished in less than 5 min, and smaples containing less than 1 μg/ml of inorganic phosphate may be detected. This assay retains a unique principle of the former two, complexation (instead of reduction) of the phosphomolybdate heteropoly complex with an appropriate triphenylmethane dye (malachite green, methyl green). Use of detergents has been eliminated and some further properties of the dyes, the assay, and the latter's applicability to a coupled enzyme system for phosphomonoester and phosphodiester analysis are discussed. Consideration is also given to the associated phenomena of transphosphorylation. (Dayan, J., and Wilson, I. B. (1964) Biochim. Biophys. Acta81, 620–623).     

Light-induced oxygen reduction as a probe of electron transport between respiratory and photosynthetic components in membranes of Rhodopseudomonas capsulata

Membrane vesicles prepared from photosynthetically grown cells of Rhodopseudomonas capsulata strain M7 are able to perform light-induced oxygen uptake. In contrast, chromatophores from mutant strain M6, lacking the cytochrome b₂₆₀-containing pathway of oxygen reduction, are completely devoid of oxygen uptake induced by light. Therefore, cytochrome b₂₆₀ (cyt b₂₆₀), previously demonstrated to be the alternative oxidase in photosynthetic and aerobic membranes of R. capsulata (La Monica, R. F., and Marrs, B. L. (1976) Biochim. Biophys. Acta449, 431–439; Zannoni, D., Melandri, B. A., and Baccarini-Melandri, A. (1976) Biochim. Biophys. Acta449, 386–400), also appears to be involved in light-induced oxygen uptake. Light-driven oxygen reduction activity is inhibited by high concentrations of cyanide (5 × 10^?3m) and by carbon monoxide in accord with the sensitivity of cyt b₂₆₀ to these inhibitors reported in aerobic membranes (Zannoni, D., Melandri, B. A., and Baccarini-Melandri, A. (1976) Biochim. Biophys. Acta423, 413–430). Further evidence for a direct involvement of the cyt b₂₆₀-containing pathway in light-induced oxygen uptake has been obtained by comparing membranes from semiaerobically grown cells to those from photosynthetic cells of R. capsulata M7. The substrate-dependent dark oxidase activity associated with the cyt b₂₆₀-containing pathway is 4.6 times higher in semiaerobic than in photosynthetic membranes, and a parallel enhancement of light-induced oxygen uptake is observed. The data presented are in agreement with and extend previous results on the composition and function of the respiratory and photosynthetic apparatus, supporting an association of cytochrome b₂₆₀ with both the aerobic and photosynthetic systems present in membranes of R. capsulata. These findings clearly demonstrate that respiratory electron carriers have access to electrons flowing from the photosynthetic reaction center, i.e., the two systems are “electrically connected” in membrane fragments from this organism.     

Proteolysis in eucaryotic cells: Aminopeptidases and dipeptidyl aminopeptidases of yeast revisited

Using nine different l-aminoacyl-4-nitroanilides and four different dipeptidyl-4-nitroanilides, aminopeptidases and dipeptidyl aminopeptidases active at pH 7.5 and (or) pH 5.5 in logarithmically growing and stationary-phase cells of Saccharomyces cerevisiae were searched for. Ion-exchange chromatography was used to separate the proteins of the soluble cell extract. Besides the three already-characterized aminopeptidases—aminopeptidase I (P. Matile, A. Wiemken, and W. Guyer (1971) Planta (Berlin)96, 43–53; J. Frey and K. H. Röhm (1978) Biochim. Biophys. Acta527, 31–41), aminopeptidase II (J. Frey and K. H. Röhm (1978) Biochim. Biophys. Acta527, 31–41; J. Knüver (1982) Thesis, Fachbereich Chemie, Marburg, FRG), and aminopeptidase Co (T. Achstetter, C. Ehmann, and D. H. Wolf (1982) Biochem. Biophys. Res. Commun.109, 341–347)—12 additional aminopeptidase activities are found in soluble cell extracts eluting from the ion-exchange column. These activities differ from the characterized aminopeptidases in one or more of the parameters such as charge, size, substrate specificity, inhibition pattern, pH optimum for activity and regulation. Also, a particulate aminopeptidase, called aminopeptidase P, is found in the nonsoluble fraction of disintegrated cells. Besides the described particulate X-prolyl-dipeptidyl aminopeptidase (M. P. Suarez Rendueles, J. Schwencke, N. Garcia-Alvarez and S. Gascon (1981) FEBS Lett.131, 296–300), three additional dipeptidyl aminopeptidase activities of different substrate specificities are found in the soluble extract.     

Replacement of ethanolamine phosphate by 3-aminopropylphosphonate in the phospholipids of Tetrahymena

When Tetrahymena thermophila is grown on a medium containing up to 5 mm 3-aminopropylphosphonate, up to 90% of the ethanolamine phosphate in phosphatidylethanolamine is replaced by the 3-aminopropylphosphonate. No accompanying alteration of the phospholipid composition of Tetrahymena is observed. This contrasts with the results obtained when 2-aminoethylphosphonate, the naturally occurring compound, is added to the growth medium (Biochim. Biophys. Acta528, 394–398, 1978); the 2-aminoethylphosphonate causes a substantial increase in the 2-aminoethylphosphonolipid and a reciprocal decrease in phosphatidylethanolamine. Thus, there is apparently a one-way control system in Tetrahymena whereby 2-aminoethylphosphonate and its phosphonolipid may influence the level of phosphatidylethanolamine in the cell, but ethanolamine phosphate, as represented by its isosteric analog, does not influence the phospholipid levels. There is no effect of the 3-aminopropylphosphonate on de novo 2-aminoethylphosphonate biosynthesis indicating a strict specificity for 2-aminoethylphosphonate as its own feedback inhibitor.     

1,4-Butanediol diglycidyl ether coupling of carbohydrates to sepharose: Affinity adsorbents for lectins and glycosidases

The use of 1,4-butanediol diglyeidyl ether to couple carbohydrate ligands to Sepharose [Sundberg, L., and Porath, J. (1975) J. Chromatogr. 90, 87; Vretblad, P. (1976) Biochim. Biophys. Acta. 434, 169] has been explored with a number of carbohydrate derivatives, such as amino sugars (N-acetylglucosamine, N-acetylgalactosamine, nonacetylated short oligomers of glucosamine), methyl glycosides (O-methyl-α-mannoside and O-methyl-β-galactoside), di- and oligosaccharides (lactose and stachyose), and polysaccharides (yeast mannan and dextrin). Using model reactions it has been established that all but the reducing sugars are sufficiently stable to withstand the alkaline conditions required for the coupling reaction, and that the primary alcohol at the C₆ position of the sugars is the primary site for the coupling reaction. In the case of glucosamine, the amino group is six times more reactive than is the 6-hydroxy group. The following affinity adsorbents have been tested and found useful in the purification of lectins and glycosidases: a yeast mannan adsorbent binds jack bean α-mannosidase (0.15 mg/ml of adsorbent) and concanavalin A (0.5 mg/ml); a dextrin adsorbent binds bovine pancreatic α-amylase (2 mg/ml of adsorbent); a lactose adsorbent binds peanut lectin (5 mg/ml of adsorbent); a (GlcNAc)_3–4 adsorbent binds wheat germ lectin (50 mg/ml of adsorbent); and, as previously reported [Vretblad, P. (1976) Biochim. Biophys. Acta. 434, 169], a GlcNAc adsorbent binds wheat germ lectin (10 mg/ml of adsorbent) and a GalNAc adsorbent binds soybean lectin (18 mg/ml of adsorbent).     

Vanadate affects glucose metabolism of human erythrocytes

Vanadate causes a rapid breakdown of 2,3-bisphosphoglycerate in intact erythrocytes. This metabolite is nearly stoichiometrically transformed into pyruvate, which changes the cell redox state and enhances the glycolytic flux. The results show that the vanadate effect on 2,3-bisphosphoglycerate, also evident in hemolysates, is attributable to the stimulation of a phosphatase activity of the phosphoglycerate mutase. In agreement with others (J. Carreras, F. Climent, R. Bartrons and G. Pons (1982) Biochim. Biophys. Acta705, 238–242), vanadate is thought to destabilize the phosphoryl form of this enzyme which shows competitive inhibition between the ion and 2,3-bisphosphoglycerate in the mutase reaction. A competitive inhibition between vanadate and glucose 1,6-bisphosphate is also found for phosphoglucomutase, without evidence for phosphatase activity toward the bisphosphate cofactor.     

Effect of 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone on the secondary electron acceptor B of photosystem II

Measurements of chlorophyll fluorescence have been used to monitor electron transport from the primary electron acceptor of photosystem II, Q, to the secondary acceptor, B, in chloroplasts in either the presence or the absence of the plastoquinone analog 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone (DBMIB). Electron transport is markedly slower from Q^? to either B or B^? in the presence of DBMIB. Binary oscillations in the rate of reoxidation of Q^? (equivalent to the reactions Q^?B → QB^? and Q^?B^? → QB^2?) after each of a series of flashes were of a phase opposite to those observed in the absence of DBMIB (J. M. Bowes, and A. R. Crofts, (1980) Biochim. Biophys. Acta590, 573–584). The results confirm that inhibition of electron transport by DBMIB in chloroplasts is not restricted to an inhibition of electron transfer from the plastoquinone pool, but that there is also a specific interaction between the reduced form of the inhibitor and the secondary electron acceptor B. Models are discussed to account for the mechanism of this interaction.     

On “Entropy consumption in primary photosynthesis” by Jennings et al.

The preceding paper [R.C. Jennings, E. Belgio, A.P. Casazza, F.M. Garlaschi, G. Zucchelli, Entropy consumption in primary photosynthesis, Biochim. Biophys. Acta (in press)] is criticized on several grounds.     

Assay of δ-aminolevulinic acid synthetase in homogenates of mouse,rat, and human liver: Species differences in requirement for an exogenous succinyl-CoA-generating system

Conditions required for optimal assay of low levels of activity of hepatic δ-aminolevulinic acid synthetase have been studied, comparing dilute homogenates of mouse, rat, and human livers. The assay method used was a modification of that described by Ebert et al. (Biochim. Biophys. Acta (1970)208, 236–250), and livers were studied from both untreated animal and human subjects and subjects pretreated with porphyrinogenic compounds. In homogenates of mouse and human but not rat liver, maximal rates of δ-aminolevulinic acid formation required addition to the incubation mixture of an exogenous system for succinyl-CoA generation. The requirement for this generating system was increased if livers from pretreated subjects were frozen and stored prior to assay, suggesting that the endogenous capacity for succinyl-CoA generation was more labile than δ-aminolevulinic acid synthetase under these conditions. Of the metabolic inhibitors tested (F^?, malonate, and arsenite), only F^? (100 mm final concentration) enhanced activity. Increasing the permeability of mitochondria by quick freezethawing of fresh homogenates just before assay did not increase the rate of δ-aminolevulinic acid formation.     

Amino acid sequence of the coelomic C globin from the sea cucumberCaudina (Molpadia) arenicola

The sequence of a globin from a marine invertebrate, the sea cucumberCaudina (Molpadia) arenicola (Echinodermata), is reported. This globin, chain C, is one of four major globins found in coelomic red cells in this organism and is the second to be sequenced. Chain C consists of 157 residues, is amino-terminally acetylated, and has an extended amino-terminal region. This globin shares a 60% sequence identity with the other sequencedC. arenicola globin, D chain (Mauriet al., Biochem. Biophys. Acta 1078, 63–67, 1991), but has a 93.6% identity with a globin from another sea cucumber,Paracaudina chilensis (Suzuki,Biochem. Biophys. Acta, 998, 292–296, 1989).     

Interaction of poly(L-lysine) and copolymers of lysine with immobilized DNA.

Sonicated DNA has been covalently attached to Sepharose 4B by a carbodiimide method [Rickwood, P. (1972) Biochim. Biophys. Acta269, 47–50] which minimizes modification of the DNA and matrix. Columns of this material have been used to study the interaction between cationic polypeptides and DNA. When poly(l-lysine) is bound to such columns at low ionic strength and then eluted with a linear salt gradient the polypeptide elutes over a broad range of salt concentration, presumably reflecting different strengths of interaction with various sites on the DNA. The broadness of the elution profile cannot be attributed to heterogeneity in the poly(l-lysine) sample but rather to the $\text{AT}\text{GC}$ content of various DNA sites. Studies with other polypeptides, poly(l-Lys⁷⁹, l-Leu²¹) and poly-(l-Lys-l-Ala-Gly), as well as studies at different temperatures, have helped to clarify the possible roles of conformational mobility, polypeptide hydrophobicity, and the presence of contiguous lysines in determining the strength of interaction of polypeptides and proteins with DNA sites.     

Investigation of the pH dependence of proton uptake by porcine heart mitochondrial malate dehydrogenase upon binding of NADH

The pH dependence of proton uptake upon binding of NADH to porcine heart mitochondrial malate dehydrogenase (l-malate: NAD⁺ oxidoreductase, EC 1.1.1.37) has been investigated. The enzyme has been shown to exhibit a pH-dependent uptake of protons upon binding NADH at pH values from 6.0 to 8.5. Enzyme in which one histidine residue has been modified per subunit by the reagent iodoacetamide (E. M. Gregory, M. S. Rohrbach, and J. H. Harrison, 1971, Biochim. Biophys. Acta253, 489–497) was used to establish that this specific histidine residue was responsible for the uptake of a proton upon binding of NADH to the native enzyme. It has also been established that while there is no enhancement of the nucleotide fluorescence upon addition of NADH to the iodoacetamide-modified enzyme, NADH is nevertheless binding to the modified enzyme with the same stoichiometry as with native enzyme. The data are discussed in relation to the involvement of the essential histidine residue in the catalytic mechanism of “histidine dehydrogenases” recently proposed by Lodola et al. (A. Lodola, D. M. Parker, R. Jeck, and J. J. Holbrook, 1978, Biochem. J.173, 597–605) and the catalytic mechanism of “malate dehydrogenases” recently proposed by L. H. Bernstein and J. Everse (1978, J. Biol. Chem.253, 8702–8707).     

Development of the cation-induced stacking capacity during the biogenesis of higher plant thylakoids

We studied the capacity of the thylakoid membrane to form grana stacks in the presence of cations, monovalent or divalent, added to N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine “low-salt” disorganized plastids during their greening. Grana stacking was monitored by the yield of heavy subchloroplast fractions separated by differential centrifugation after digitonin disruption of plastids (J. H. Argyroudi-Akoyunoglou, 1976, Arch. Biochem. Biophys., 176, 267–274). Primary thylakoids of the agranal protochloroplasts formed in periodic light do not show the cation-induced stacking capacity of the mature green chloroplast thylakoids. Similarly, the cation effect saturates at lower cation concentrations in mature chloroplasts than in plastids of the early stages of greening. The capacity for cation-induced stacking and for saturation of the effect at low cation concentrations appears gradually after exposure to continuous light and parallel to the appearance of chlorophyll b and the polypeptides of the 25,000–30,000 molecular weight range of lipid-free thylakoids, probably derived from the chlorophyll b-rich chlorophyll protein Complex II. The thylakoid peripheral stroma proteins ribulosediphosphate carboxylase and the coupling factor protein are not involved in the cation-induced stacking, since their removal (H. Strotmann, H. Hesse, and K. Edelmann, 1973, Biochim. Biophys. Acta, 314, 202–210) does not affect the thylakoid aggregation.     

Reaction of histidine residues in proteins with diethylpyrocarbonate: Differentlal molar absorptivities and reactivities

The applicability of the spectrophotometric determination of histidine according to Ovadi et al. [(1967) Acta Biochim. Biophys. Acad. Sci. Hung.3, 455–458] to a large range of molar ratios of diethylpyrocarbonate (DEP) to histidine requires the use of appropriate differential molar absorptivities dependent on the DEP concentration used. This improved procedure allows a more differentiated aproach to the reactivity of histidine residues in proteins.     

Involvement of a dithiol protein in mitochondrial energy-linked functions and its relation to coupling factor B.

The coupling factor protein isolated previously in pure form with a molecular weight of 11–12 × 10³ (K.-S. You and Y. Hatefi, 1976, Biochim. Biophys. Acta423, 398–412) has been shown to restore ATP-induced NAD reduction by succinate, transhydrogenation from NADH to NADP, and ATP-³³P_i exchange to submitochondrial particles rendered deficient by extraction with 1 m NH₄OH. The factor also stimulated the oxidative phosphorylation activity of the extracted particles 2.5- to >3-fold. The stimulatory effect of the factor was inhibited by mercurials, Cd²⁺, phenylarsine oxide, and diamide, indicating that it contains an essential dithiol. Dithiothreitol and dihydrolipoate did not replace the protein factor in stimulating the deficient particles. The purified dithiol-containing protein was precipitated and inhibited by antibody raised against coupling factor B. Since this antibody also inhibits coupling factor F₂, it is concluded that the active principle of coupling factors B and F₂ is the purified dithiol-containing protein of molecular weight 11–12 × 10³ referred to above.     

Experimental and theoretical studies on TI+ interactions with the cation-selective channel of the sarcoplasmic reticulum

Summary This paper presents an experimental study and a theoretical interpretation of the effects of thallous ion on the electrical properties of the cation-selective channel of the sarcoplasmic reticulum (SR channel). The properties of this channel in solutions which do not contain thallous ion are consistent with the predictions of Läuger's theory for singly occupied pores (P. Läuger, 1973,Biochim. Biophys. Acta 311:423–441). However, this theory does not account for SR channel properties in mixtures containing thallous ion. SR channel conductance is less than predicted in mixed salt solutions of thallium with either potassium or ammonium (J. Fox, 1983,Biochim. Biophys. Acta 736:241–245), yet is greater than expected in mixtures of lithium and thallium. In a simple single-ion pore, the ratio of the products of the single-salt binding constants and maximum conductances is equal to the permeability ratio calculated from zero-current potential experiments under near equilibrium conditions. This is not found for the SR channel when thallous ion is present. SR channel properties in the presence of thallous ion can, however, be explained by a model which postulates the existence of two external modulatory sites on the channel, without implying double-occupancy in the permeation pathway. When thallous ion is bound to a modulatory site the maximum conductance of the channel to all permeating ions is altered (thallous included). Two other models (a three-barrier, two-internal-site pore which allows multiple occupancy, and a pore with fluctuating barriers) are discussed, but are found to be unable to fit our conductance data at different concentrations.     

The dissociation of Helix pomatia alpha-hemocyanin. Microheterogeneity at pH 5.7 in 0.4 m NaCl.

The careful equilibrium light-scattering study by Engelborghs and Lontie (1973, J. Mol. Biol., 77, 577–587) of the dissociation into half molecules of the α-component of Helix pomatia hemocyanin demonstrated that, although complete dissociation was achieved in the presence of 1 m NaCl in 0. 1 m sodium acetate buffer at pH 5.7, incomplete dissociation occurred in 0.4 m NaCl in the same buffer in such a way that it could not be explained by simple application of the law of mass action. On the basis of their light-scattering data in acetate buffer containing 0.4 m NaCl, these authors indicated that the protein sample behaved like a mixture of thermodynamic species characterized by a multiplicity of dissociation constants. In this respect their conclusions were similar to those of Siezen and van Driel (1973, Biochim. Biophys. Acta, 295, 131–139) from their study of the influence of pH on association-dissociation processes at alkaline pH values. One simple model which actually fits the data of Engelborghs and Lontie reasonably well assumes the presence of some incompetent whole molecules, unable to dissociate into halves in 0.4 m NaCl: With a formation constant of 0.18 – 0.23 liters/g for whole molecules from half molecules, 30–35% of the material would be in the form of incompetent whole molecules. On the basis of this model, the major point of reinterpretation is that the sedimentation velocity diagram contains a fast Schlieren peak representing incompetent whole molecules and a slow peak representing a reaction mixture, rather than half molecules. This picture explains why the ratio of peak areas is independent of concentration, why material separated by ultracentrifugation appears not to reequilibrate when resubjected to ultracentrifugation, and why, on the other hand, mixing experiments have indicated rapid reequilibration of species.     

The stimulation of collagen secretion by ascorbate as a result of increased proline hydroxylation in chick embryo fibroblasts.

Collagen secretion by chick embryo fibroblasts was measured by incorporating [¹⁴C]proline into proteins and then analyzing the amount of collagen in the cell and medium separately by using purified bacterial collagenase. In order to produce varying levels of hydroxylation, cells were incubated with varying concentrations of ascorbate or with varying concentrations of α,α′-dipyridyl in the presence of saturating ascorbate. Ascorbate stimulated both the hydroxylation of proline in collagen and the secretion of collagen; the concentration of ascorbate required for half-maximal stimulation of both proesses was approximately 4.5 × 10^?7, m. Since the cells could concentrate ascorbate 10-fold, this K_M for proline hydroxylation is 100-fold lower than values reported for purified prolyl hydroxylase (Abbot, M. T., and Udenfriend, S. (1974) in Molecular Mechanisms of Oxygen Activation (Hayaishi, O., ed.), p. 173, Academic Press New York; Kivirikko K. I., et al. (1968) Biochim. Biophys. Acta, 151, 558–567). Conversely, α,ga′-dipyridyl inhibited both proline hydroxylation and collagen secretion; half-maximal inhibition of both processes was observed at 7 × 10^?5, m. The results of the two types of experiments show that the secretion of collagen becomes directly proportional to proline hydroxylation when approximately 30% of the proline residues in collagen have been hydroxylated compared to maximal hydroxylation of 50%. Since the stability of triple-helical collagen at 37 °C has been shown to be dependent on the hydroxyproline content of the molecule (Rosenbloom, J., et al. (1973) Arch. Biochem. Biophys., 158, 478–484), we suggest that the observed proportionality between secretion and hydroxylation is a reflection of the increased amount of stable triple helical collagen at 37 °C. When the cells were incubated with a concentration of ascorbate that was saturating for secretion and hydroxylation, there was no significant activation of prolyl hydroxylase as measured in a cell-free extract. These experiments suggest that ascorbate effects collagen secretion by acting at the site of proline hydroxylation but not by increasing the activity of prolyl hydroxylase.     

Reversion of Scenedesmus photosynthetic mutants

The chlorophyll-protein complex associated with Photosystem I, CP-I, which is absent in Scenedesmus obliquus mutant 8 grown in the dark, is present in light-grown photosynthetically competent cultures of Scenedesmus 8, contrary to a previously published report (Gee, R., Saltman, P. and Weaver, E. (1969) Biochim. Biophys. Acta 189, 106–115). This change from mutant to wild-type traits is not due to photo-adaptation, but reflects the genetic reversion of some of the cells in the dark-grown population, as shown by the following evidence. (1) Individual cultures take different lengths of time to regain competence, whether started from the same or different dark-grown mutant 8 cultures. (2) Competent cells do not de-adapt when returned to the dark. (3) The appearance of wild-type traits is gradual. (4) A small number of cells in mutant populations are wild-type and are selected for in the light. The reversion rate of mutant 8 to the wild-type is high compared to that of mutant 11.