Partitioning the diversity of riverine fish: the roles of habitat types and non-native species

1. Quantifying how biological diversity is distributed in the landscape is one of the central themes of conservation ecology. For this purpose, landscape classifications are being intensively used in conservation planning and biodiversity management, although there is still little information about their efficacy. 2. I used data from 158 running water sites in Hungary to examine the contribution of six a priori established habitat types to regional level diversity of fish assemblages. Three community measures [species richness, diversity (Shannon, Simpson indices), assemblage composition] were examined at two assemblage levels (entire assemblage, the native assemblage). The relative role of non‐native species was quantified to examine their contribution to patterns in diversity in this strongly human influenced landscape. 3. Additive diversity partitioning revealed the primary importance of beta diversity (i.e. among‐site factors) to patterns in species richness. Landscape‐scale patterns in species richness were best explained by between‐habitat type (beta₂: 41.2%), followed by within‐habitat type (beta₁: 37.7%) and finally within‐site (alpha: 21.1%) diversity. Diversity indices showed patterns different from species richness, indicating the importance of relative abundance distributions on the results. Exclusion of non‐natives from the analysis gave similar results to the entire‐assemblage level analysis. 4. Canonical analysis of principal coordinates, complemented with indicator species analysis justified the separation of fish assemblages among the habitat types, although classification error was high. Multivariate dispersion, a measure of compositional beta diversity, showed significant differences among the habitat types. Contrary to species diversity (i.e. richness, diversity indices), patterns in compositional diversity were strongly influenced by the exclusion of non‐natives from the analyses. 5. This study is the first to quantify how running water habitat types contribute to fish diversity at the landscape scale and how non‐native species influence this pattern. These results on riverine fish assemblages support the hypothesis that environmental variability (i.e. the diversity of habitat types) is an indication of biodiversity and can be used in large‐scale conservation designs. The study emphasises the joint application of additive diversity partitioning and multivariate statistics when exploring the contribution of landscape components to the overall biodiversity of the landscape mosaic.     

Effects of fishing and regional species pool on the functional diversity of fish communities

The potential population and community level impacts of fishing have received considerable attention, but little is known about how fishing influences communities' functional diversity at regional scales. We examined how estimates of functional diversity differed among 25 regions of variable richness and investigated the functional consequences of removing species targeted by commercial fisheries. Our study shows that fishing leads to substantial losses in functional diversity. The magnitude of such loss was, however, reduced in the more speciose regions. Moreover, the removal of commercially targeted species caused a much larger reduction in functional diversity than expected by random species deletions, which was a consequence of the selective nature of fishing for particular species traits. Results suggest that functional redundancy is spatially variable, that richer biotas provide some degree of insurance against the impact of fishing on communities' functional diversity and that fishing predominantly selects for particular species traits. Understanding how fishing impacts community functional diversity is key to predict its effects for biodiversity as well as ecosystem functioning.     

Coupling between taxonomic and functional diversity in protistan coastal communities

The study of protistan functional diversity is crucial to understand the dynamics of oceanic ecological processes. We combined the metabarcoding data of various coastal ecosystems and a newly developed trait-based approach to study the link between taxonomic and functional diversity across marine protistan communities of different size-classes. Environmental DNA was extracted and the V4 18S rDNA genomic region was amplified and sequenced. In parallel, we tried to annotate the operational taxonomic units (OTUs) from our metabarcoding dataset to 30 biological traits using published and accessible information on protists. We then developed a method to study trait correlations across protists (i.e. trade-offs) in order to build the best functional groups. Based on the annotated OTUs and our functional groups, we demonstrated that the functional diversity of marine protist communities varied in parallel with their taxonomic diversity. The coupling between functional and taxonomic diversity was conserved across different protist size classes. However, the smallest size-fraction was characterized by wider taxonomic and functional groups diversity, corroborating the idea that nanoplankton and picoplankton are part of a more stable ecological background on which larger protists and metazoans might develop.     

高寒草甸不同坡向植物群落物种多样性与功能多样性的关系

植物群落物种多样性与功能多样性是生态学研究的热点问题之一,研究其对于保护生物多样性和维持生态系统功能具有重要意义。采用野外群落调查方法,探讨了物种多样性与功能多样性在坡向梯度上的变化格局及其关联性。结果显示：（1）从北坡到南坡,土壤含水量、有机碳呈递减趋势;坡度、照度、土温、pH呈递增趋势;土壤全氮、全磷在西坡明显低于其他各坡向;（2）物种多样性指数均由北坡向南坡依次递减;（3）一元性状功能多样性在各坡向间的差异显著（P<0.05）,除LDMC_FDrao外,其他功能性状均为北坡大于南坡;（4）多元性状功能丰富度与功能均匀度均由北坡向南坡呈递减的趋势,各坡向的功能均匀度差异性不显著。通过相关分析与通径分析发现,功能多样性指数的主要环境决定因子与限定因子均存在差异：功能丰富度、功能均匀度主要环境限定因子为pH,功能离散度主要环境限定因子为土温;功能离散度主要环境决定因子为土壤含水量;（5）物种多样性指数与功能丰富度呈正线性相关,与功能离散度呈负线性相关,而与功能均匀度不相关。     

Reservoirs promote the taxonomic homogenization of fish communities within river basins

Most studies analyzing patterns in biotic homogenization of fish communities have used large-scale approaches, while the community-level effects of species introductions and local extinctions within river basins have been sparsely analyzed. In this article, we examine patterns in freshwater fish α- and β-diversity in relation to the presence of reservoirs in a Mediterranean river (Guadiana river; Iberian Peninsula). We used fish samples from 182 river localities and 59 reservoir ones to address two main questions: (i) do reservoirs favor the establishment of invasive fish species?; and (ii) do reservoirs bear taxonomically homogenized fish communities? Although total species richness was not different between rivers and reservoirs, the latter had more invasive species and less native ones. Fish species found in reservoirs tended to be larger ones, but invasive species of any size showed higher preferences for reservoirs. Native species that were rare or absent in reservoirs were those that showed higher sensitivity to invasive species in rivers. Reservoir fish communities were taxonomically homogenized in relation to river ones, both when considering all fish species and using only natives or only invasive ones. Our results suggest that invasive species occupying reservoirs constitute an ecological filter excluding most native species from such systems. Invasive species in the study area are often widely introduced elsewhere, while native species found in reservoirs are congeneric and ecologically similar to those found in other Iberian studies. Thus, we conclude that reservoirs promote taxonomic homogenization at multiple spatial scales, while could also be promoting the functional homogenization of Iberian fish communities.     

Similar taxonomic richness but different communities of ectomycorrhizas in native forests and non-native plantation forests

This investigation sought to examine if there was a difference between the ectomycorrhizal (ECM) communities in plots of native oak and introduced Scots pine and Sitka spruce forest. The ECM communities in four plots of each forest type were described, from five soil cores collected in each plot, by morphotyping, internal transcribed spacer (ITS)-restriction fragment length polymorphism matching of mycorrhizas and sporocarps and ITS sequencing. Fifty-one distinct taxa were distinguished; 25 were identified to species level, 11 to genus and 15 remained unidentified. Seventy-one ECM species were recorded as sporocarps from the forest plots; most (43 species) were found in the Sitka spruce plots. The below-ground ECM communities of the different forest types did not differ significantly with respect to species richness of taxa on roots, but differed in species composition. Multivariate analysis produced a clear separation of the communities of the different forest types using below-ground data, but the above-ground sporocarp data did not separate the forest types. Moreover, results of a Mantel test found no relationship between the above- and below-ground similarity matrices. The oak plots had the most distinctive ECM community, with Laccaria amethystina and Elaphomyces granulatus being frequent. The Sitka spruce plots showed the lowest intra-forest type similarity and were often dominated by "nursery type" ectomycorrhizas. There was only 10% similarity between the above- and below-ground ECM species in these plots, different colonisation methods of ectomycorrhizal taxa and insufficient below-ground sampling being possible reasons for this disparity. Our results indicate that plantations of non-native Sitka spruce can support similar levels of ECM diversity as native forests.     

Freshwater fish functional and taxonomic diversity above and below Niagara Falls

The Niagara River, which connects two Great Lakes (Erie and Ontario) and forms a border between Canada and the United States, has experienced decades of abiotic and biotic disturbance as well as long-term restoration efforts. Given the iconic riverscape and importance as a binational fisheries resource, a biodiversity assessment of the mainstem Niagara River fish assemblage is overdue. Here, fish assemblage and habitat data from a standardized boat electrofishing program of the Niagara River were combined with species trait data related to substrate associations, diet preferences, reproductive strategies, and body size to quantify biodiversity patterns among river sections (sites above and below Niagara Falls), seasons (spring, summer, fall), and years (2015–2017). Sixty-five species were captured representing a variety of trait combinations. Significant differences in functional dispersion and divergence (i.e., functional diversity) were observed between river sections, seasons, and (or) years. The fish community captured in the lower river in spring 2015 had both the highest average functional dispersion (2.08?±?0.32 SD) and divergence (0.88?±?0.04 SD) compared to the other seasonal sampling efforts, but relatively few fishes were captured (n?=?686). Although non-native fishes represented a small portion of the catch over the 3 years (8.6% of catch), the seasonal presence (spring and fall) of mostly introduced large-bodied salmonids expanded functional trait space in the lower river during these periods. The importance of rare species on functional diversity metrics suggests further insight on local species detection probabilities is needed to understand if differences in functional diversity reflect ecological patterns or are driven by sampling design.

     

Loss of phytoplankton functional and taxonomic diversity induced by river regulation in a large tropical river

Hydrobiologia - Human activities have disrupted the functioning of river ecosystems around the world. In the Amazon basin, hydropower expansion has affected diversity patterns, but no study has...     

Comparing patterns of taxonomic,functional and phylogenetic diversity in reef coral communities

Coral Reefs - Biodiversity defines the variety of living organisms on this planet and is often quantified by the total number of species. However, species richness is insufficient in accounting for...     

Changes in taxonomic and functional diversity of fish communities after catastrophic habitat alteration caused by construction of Three Gorges Dam

Habitat alterations that result from anthropogenic disturbance impact both the abiotic and biotic conditions of ecosystems, causing changes in biodiversity in many parts of the world. Recently, the use of functional diversity has been suggested as an approach to better evaluate the effects of such disturbance on particular communities. Here, we investigated the temporal changes in species and functional diversities of fish communities in the downstream area of the Three Gorges Dam (TGD) before, during, and after impoundment. We found two regime shifts in the fish community in 2004 and 2013 following impoundment. Although taxonomic diversity declined sharply at the first regime shift, it increased at the second shift. On the other hand, functional diversity declined throughout the same period, indicating the loss of functional diversity despite increased species diversity. Our analysis also showed that the fish communities shifted from under‐dispersion to over‐dispersion due to both a decrease in the relative abundance of migratory fish and an increase in the number of fish adapted to the new hydrologic conditions. Our results indicated that the impacts of dams on downstream fish communities may change over time. Interactions between species may become more important when the environment is stable.     

Impacts of different monoculture types on stream benthic macroinvertebrate and fish communities

Hydrobiologia - Agribusiness is one of the main economic activities in Brazil, which caused the removal of much of its natural vegetation for the expansion of monoculture areas. Once aquatic...     

Rock structure drives the taxonomic and functional diversity of endolithic microbial communities in extreme environments

Endolithic (rock-dwelling) microbial communities are ubiquitous in hyper-arid deserts around the world and the last resort for life under extreme aridity. These communities are excellent models to explore biotic and abiotic drivers of diversity because they are of low complexity. Using high-throughput amplicon and metagenome sequencing, combined with X-ray computed tomography, we investigated how water availability and substrate architecture modulated the taxonomic and functional composition of gypsum endolithic communities in the Atacama Desert, Chile. We found that communities inhabiting gypsum rocks with a more fragmented substrate architecture had higher taxonomic and functional diversity, despite having less water available. This effect was tightly linked with community connectedness and likely the result of niche differentiation. Gypsum communities were functionally similar, yet adapted to their unique micro-habitats by modulating their carbon and energy acquisition strategies and their growth modalities. Reconstructed population genomes showed that these endolithic microbial populations encoded potential pathways for anoxygenic phototrophy and atmospheric hydrogen oxidation as supplemental energy sources.     

海州湾鱼类群落功能多样性的时空变化

功能多样性是联系物种、生态环境和生态系统功能的基础.从功能多样性的角度研究群落结构,有助于更好地理解生物多样性与生态系统功能之间的关系.本研究根据2011—2017年(除2012年外)春、秋季海州湾渔业资源底拖网调查数据,选取反映鱼类摄食、运动、生态适应性、繁殖行为和种群动态特征的13个功能性状,利用功能丰富度指数、功能均匀度指数、功能离散度指数和群落特征加权平均数指数(CWM),研究了海州湾鱼类群落功能多样性的季节、年际和空间的变化.结果表明: 海州湾鱼类群落功能多样性指数具有显著的季节差异,其中秋季功能丰富度指数显著高于春季,春季功能离散度指数显著高于秋季,鱼类洄游是造成功能多样性指数季节变化的主要原因;CWM分析表明,春季鱼类群落优势种为营养级较高、运动能力较强、生长系数、恢复力和脆弱性较高的冷/暖温性鱼类,秋季则相反,春、秋季鱼类群落均以产浮性卵鱼类为主;鱼类群落功能多样性指数呈现一定的年际变化,其中春、秋季各功能多样性指数在不同年际均呈波动趋势,表明海州湾鱼类群落稳定性较低;鱼类群落功能多样性指数呈现显著的空间差异,其中20 m以深远岸水域功能离散度指数较高.海州湾鱼类群落功能多样性具有明显的时空变化特征,鱼类生态位与其对资源的利用均随季节、年际和空间而变化.     

Regional vs local drivers of phylogenetic and species diversity in stream fish communities

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Correction to: Freshwater fish functional and taxonomic diversity above and below Niagara Falls

Environmental Biology of Fishes -     

Liana communities exhibit different species composition,diversity and community structure across forest types in the Congo Basin

Lianas are poorly characterized for central African forests. We quantify variation in liana composition, diversity and community structure in different forest types in the Yangambi Man and Biosphere Reserve, Democratic Republic of Congo. These attributes of liana assemblages were examined in 12 1-ha plots, randomly demarcated within regrowth forest, old growth monodominant forest, old growth mixed forest and old growth edge forest. Using a combination of multivariate and univariate community analyses, we visualize the patterns of these liana assemblage attributes and/or test for their significant differences across forest types. The combined 12 1-ha area contains 2,638 lianas (≥2 cm diameter) representing 105 species, 49 genera and 22 families. Liana species composition differed significantly across forest types. Taxonomic diversity was higher in old growth mixed forests compared to old growth monodominant and regrowth forests. Trait diversity was higher than expected in the regrowth forest as opposed to the rest of forest types. Similarly, the regrowth forest differed from the rest of forest types in the pattern of liana species ecological traits and diameter frequency distribution. The regrowth forest was also less densely populated in lianas and had lower liana total basal area than the rest of forest types. We speculate that the mechanism of liana competitive exclusion by dominant tree species is mainly responsible for the lower liana species diversity in monodominant compared to mixed forests. We attribute variation in liana community structure between regrowth and old growth forests mostly to short development time of size hierarchies.