First record of the genus Gratia Thomas (Ephemeroptera,Baetidae) from China with the description of a new species

A new species of Baetidae, Gratia baibungensis sp. n., is described and illustrated based on nymphal stage collected from the southeastern Tibet (Xizang) and the genus is reported for the first time from China. This new species can be readily differentiated from its congeners by the absence of a protuberance on the posterior margin of the abdominal tergum X, glabrate simple submarginal setae on the labrum, and the posterior margin of sterna VI–IX having much longer spatulate setae.     

Cirolana songkhla,a new species of brackish-water cirolanid isopod (Crustacea,Isopoda, Cirolanidae) from the lower Gulf of Thailand

Cirolana songkhla sp. n. was collected from brackish-water habitats including lagoons and estuaries in the coastal zone of the lower Gulf of Thailand. C. songkhla sp. n. is described and fully illustrated; C. songkhla sp. n. can be recognized by the presence of abundant chromatophores dorsally, lack of ornamentation on the posterior pereonites, pleonites and pleotelson, the number of robust setae on the uropodal and pleotelson margins (uropod exopod lateral margin with 12–14 RS, mesial margin with 5–8 RS; endopod lateral margin with 8–10 RS, mesial margin with 11–13 RS; pleotelson with 12–15 RS) and lack of setae on the endopods of pleopods 3–5. A dichotomous key of brackish Cirolana species in Thailand is given.     

A new species of Jesogammarus from the Iki Island,Japan (Crustacea,Amphipoda, Anisogammaridae)

A new species of anisogammarid amphipod, Jesogammarus (Jesogammarus) ikiensis sp. n., is described from freshwaters in the Iki Island, Nagasaki Prefecture, Japan, based on results of morphological and molecular analyses. The new species is distinguished from all members of the genus by the combination of small number of setae on dorsal margins of pleonites 1–3, short and small number of setae on posterior margins of peduncular articles of antennae, mandibular article 1 without setae, well developed posterior lobes of accessory lobes of coxal gills on gnathopod 2 and pereopods 3–5, and pectinate setae on palmar margin of female gnathopod 2. A key to all the species of Jesogammarus is provided.     

Towards a revision of the South American genus Praocis Eschscholtz (Coleoptera,Tenebrionidae), with estimation of the diversity of each subgenus

A review of the subgenera of the South American genus Praocis Eschscholtz (Pimeliinae: Praociini) is presented. Praocis comprises 77 species and 8 subspecies arranged in nine subgenera distributed in arid lands from Central Peru and Bolivia to the Southern part of Patagonia in Chile and Argentina. For each subgenus of Praocis: Praocis Eschscholtz, Mesopraocis Flores & Pizarro-Araya, subgen. n., Anthrasomus Guérin-Méneville, Filotarsus Gay & Solier, Postpraocis Flores & Pizarro-Araya, subgen. n., Hemipraocis Flores & Pizarro-Araya, subgen. n., Orthogonoderes Gay & Solier, Praonoda Flores & Pizarro-Araya, subgen. n., and Praocida Flores & Pizarro-Araya, subgen. n., we present a diagnosis using new and constant characters of adult morphology such as clypeal configuration, length and proportion of antennomeres 9, 10 and 11, arrangement of apical tomentose sensory patches on antennomeres 10 and 11, anterior margin of prosternum, lateral margin of elytron, ventral surface of profemora, and shape of protibiae. An identification key for the nine subgenera of Praocis is presented. Type species are designated for the five new subgenera; for Mesopraocis: Praocis calderana Kulzer, for Postpraocis: Praocis pentachorda Burmeister, for Hemipraocis: Praocis sellata Berg, for Praonoda: Praocis bicarinata Burmeister, for Praocida: Praocis zischkai Kulzer, and for the previously described subgenus Orthogonoderes: Praocis subreticulata Gay & Solier. The current number of species and the estimated number of species to be described are presented. The distribution ranges of the subgenera, including new records from collections and recent expeditions, are given. Habitat preferences and a discussion of the biogeography of the genus are also presented.     

New records of fish parasitic isopods of the gill-attaching genus Mothocya Costa,in Hope, 1851 from the Virgin Islands,Caribbean, with description of a new species

Two species of Mothocya Costa, in Hope, 1851 are reported from the Virgin Islands. Mothocya xenobranchia Bruce, 1986 was collected from St. John Island from the gills of the Atlantic needlefish, Strongylura marina, which is a new locality record and also confirms a previously uncertain host identity. Mothocya bertlucy sp. n. is described from St. Thomas, St John and Guana Islands, from the gills of the redlip blenny, Ophioblennius macclurei, the first record of a blenny as host for any Mothocya. The distinguishing characters of Mothocya bertlucy sp. n. include its small size (< 9 mm) and eyes, the slender pleotelson with a narrowly rounded caudomedial point, extended uropod peduncle and uropods which do not extend past the pleotelson posterior margin, and the narrow pleon which is only slightly overlapped by pereonite 7.     

A new Early Cretaceous eutherian mammal from the Sasayama Group,Hyogo, Japan

We here describe a new Early Cretaceous (early Albian) eutherian mammal, Sasayamamylos kawaii gen. et sp. nov., from the ‘Lower Formation’ of the Sasayama Group, Hyogo Prefecture, Japan. Sasayamamylos kawaii is characterized by a robust dentary, a distinct angle on the ventral margin of the dentary at the posterior end of the mandibular symphysis, a lower dental formula of 3–4 : 1 : 4 : 3, a robust lower canine, a non-molariform lower ultimate premolar, and a secondarily reduced entoconid on the molars. To date, S. kawaii is the earliest known eutherian mammal possessing only four premolars, which demonstrates that the reduction in the premolar count in eutherians started in the late Early Cretaceous. The occurrence of S. kawaii implies that the relatively rapid diversification of eutherians in the mid-Cretaceous had already started by the early Albian.     

A New Notosuchian from the Late Cretaceous of Brazil and the Phylogeny of Advanced Notosuchians

A new notosuchian crocodyliform from the Late Cretaceous Bauru Group found in the southeastern State of São Paulo (Brazil) is described here. The new taxon, Caipirasuchus stenognathus, is referred as a new species of the recently erected genus Caipirasuchus within the clade Sphagesauridae based on a phylogenetic analysis of basal mesoeucrocodylians. Caipirasuchus stenognathus is represented by an almost complete skull and lower jaw that has autapomorphic characters that distinguish it from other species of Sphagesauridae. These autapomorphies include: maxilla forming part of the orbital margin (absence of lacrimal-jugal contact), nasal with smooth depressions on the posterior region close to the contact with the maxilla and lacrimal, postorbital with posterior palpebral facet that extends posteriorly underneath the ear-flap groove, and a distinct anterior process of the medial flange of the retroarticular process. Additionally, the new taxon lacks autapomorphic features described in other sphagesaurids. The phylogenetic analysis results in a monophyletic genus Caipirasuchus, that is the sister group of a clade fomed by Sphagesaurus huenei, Caryonosuchus pricei, and Armadillosuchus arrudai. Sphagesaurids also include a basal clade formed by Adamantinasuchus navae and Yacarerani boliviensis. Other notosuchian taxa, such as Mariliasuchus amarali, Labidiosuchus amicum, Notosuchus terrestris, and Morrinhosuchus luziae are successive sister taxa of Sphagesauridae, forming a clade of advanced notosuchians that are restricted to the Late Cretaceous of South America. These results contrast with most previous phylogenetic hypotheses of the group that depicted some members of Sphagesauridae as more closely related to baurusuchids, or found Asian (e.g., Chimaerasuchus) or African (Malawisuchus, Pakasuchus) forms nested within advanced notosuchians that are, according to our analysis, endemic of the Late Cretaceous of South America.     

A New Species of Chigger Mite (Acari: Trombiculidae) from Rodents in Southwest China

This paper describes a new species of chigger mite (Acari: Trombiculidae), Gahrliepia cangshanensis n. sp., from rodents in southwest China. The specimens were collected from Yunnan red-backed voles, Eothenomys miletus (Thomas, 1914), and a Chinese white-bellied rat, Niviventer confucianus (Milne-Edwards, 1871) in Yunnan Province. The new species is unique mainly in its number of dorsal setae (n=21), and it has the following features: fT (formula of palpotarsus)=4B (B=branched), fp (formula of palpal seta)=B/N/N/N/B (N=naked), a broad tongue-shaped scutum with an almost straight posterior margin, and 17 PPLs (posterior posterolateral seta) with a length of 36-43 µm. This chigger mite may also infect other rodent hosts and may be distributed in other localities.     

Cumulative t-link threshold models for the genetic analysis of calving ease scores

In this study, a hierarchical threshold mixed model based on a cumulative t-link specification for the analysis of ordinal data or more, specifically, calving ease scores, was developed. The validation of this model and the Markov chain Monte Carlo (MCMC) algorithm was carried out on simulated data from normally and t₄ (i.e. a t-distribution with four degrees of freedom) distributed populations using the deviance information criterion (DIC) and a pseudo Bayes factor (PBF) measure to validate recently proposed model choice criteria. The simulation study indicated that although inference on the degrees of freedom parameter is possible, MCMC mixing was problematic. Nevertheless, the DIC and PBF were validated to be satisfactory measures of model fit to data. A sire and maternal grandsire cumulative t-link model was applied to a calving ease dataset from 8847 Italian Piemontese first parity dams. The cumulative t-link model was shown to lead to posterior means of direct and maternal heritabilities (0.40 ± 0.06, 0.11 ± 0.04) and a direct maternal genetic correlation (-0.58 ± 0.15) that were not different from the corresponding posterior means of the heritabilities (0.42 ± 0.07, 0.14 ± 0.04) and the genetic correlation (-0.55 ± 0.14) inferred under the conventional cumulative probit link threshold model. Furthermore, the correlation (> 0.99) between posterior means of sire progeny merit from the two models suggested no meaningful rerankings. Nevertheless, the cumulative t-link model was decisively chosen as the better fitting model for this calving ease data using DIC and PBF.     

Descriptions of two new silversides, Hypoatherina golanii and Hypoatherina lunata, from the Indo-West Pacific (Atheriniformes: Atherinidae)

Two new atherinid fishes, Hypoatherina golanii and Hypoatherina lunata, are described based on specimens collected from the wide range of the Indo-West Pacific. The former species is known from the Red Sea and was confused with Hypoatherina barnesi because it has a somewhat wide midlateral band and overlapping meristic counts. Hypoatherina golanii is distinguished from its congeners by the midlateral scales with an indented posterior margin, posterior margin of anterior predorsal scales with a spatular outgrowth, posterior margin of axillary scales without a distinct projection, and posterior end of maxilla not slanted downward. Hypoatherina lunata is distributed in the waters of southern Japan (Okinawa and Kagoshima prefectures) and Indonesia (North Sulawesi, Maluku, and Papua), but was confused with Hypoatherina woodwardi. Hypoatherina lunata is distinguished from its congeners in having a distinct crescent marking in front of the eye and the anus usually situated anterior to the tip of the pelvic fin.     

Margollus bokanicus n. sp. from Iran,the Fourth Species of a Rare Nematode Genus (Dorylaimida,Tylencholaimellidae)

Margollus bokanicus n. sp., collected from natural habitats in Khorasaneh district, Bokan, West Azarbaijan province, Iran, is described. Morphological and morphometric data are provided as well as drawings and light microscopy illustrations. The new species is characterized by a medium size body length (0.60 to 0.73 mm), labial and postlabial sclerotizations, lip region 7-μm wide, offset by constriction and long neck (167 to 207 μm), long pharyngeal basal bulb (27 to 36 μm) or 16% to 17% of total neck length, female genital system monodelphic–opisthodelphic, anterior branch reduced to a uterine sac (26–29 μm) or 1.1 to 1.3 times the body diameter, long posterior uterus (25–28 μm) or 1.1 to 1.3 times the body diameter, V = 40 to 47, cylindroid female tail (17 to 24 μm, c = 31 to 38, c’ = 1.1 to 1.4), and males unknown. This taxon is easily distinguishable from other Margollus species by its smaller general size and more posterior vulva. A compendium of Margollus species is also presented.     

A new species of Gastrosaccus Norman, 1868 (Mysida,Mysidae, Gastrosaccinae) from a sandy shore of Indonesia

A new species of the mysid crustacean genus Gastrosaccus Norman, 1868 (Mysida, Mysidae, Gastrosaccinae) is reported from a sandy shore of Lombok Island, Indonesia. These specimens resemble G. sorrentoensis Wooldridge & McLachlan, 1986 and G. yuyu Bamber and Morton, 2012 by the possession of an articulated process on the fifth abdominal somite together with a fringe of spine-like filaments on the posterodorsal margin of the carapace. The Lombok population differs from the known congeners by having comparatively fewer numbers of carpopropod segments on the endopod of the third to eighth thoracic limbs and the conformation in the telson and in the male third pleopod. Hence, G. lombokiensis sp. n. is proposed herein as a third species of “G. sorrentoensis” species group.     

Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)

Genealogical data are an important source of evidence for delimiting species, yet few statistical methods are available for calculating the probabilities associated with different species delimitations. Bayesian species delimitation uses reversible-jump Markov chain Monte Carlo (rjMCMC) in conjunction with a user-specified guide tree to estimate the posterior distribution for species delimitation models containing different numbers of species. We apply Bayesian species delimitation to investigate the speciation history of forest geckos (Hemidactylus fasciatus) from tropical West Africa using five nuclear loci (and mtDNA) for 51 specimens representing 10 populations. We find that species diversity in H. fasciatus is currently underestimated, and describe three new species to reflect the most conservative estimate for the number of species in this complex. We examine the impact of the guide tree, and the prior distributions on ancestral population sizes (θ) and root age (τ₀), on the posterior probabilities for species delimitation. Mis-specification of the guide tree or the prior distribution for θ can result in strong support for models containing more species. We describe a new statistic for summarizing the posterior distribution of species delimitation models, called speciation probabilities, which summarize the posterior support for each speciation event on the starting guide tree.     

Opposing roles for Egalitarian and Staufen in transport,anchoring and localization of oskar mRNA in the Drosophila oocyte

Localization of oskar mRNA includes two distinct phases: transport from nurse cells to the oocyte, a process typically accompanied by cortical anchoring in the oocyte, followed by posterior localization within the oocyte. Signals within the oskar 3’ UTR directing transport are individually weak, a feature previously hypothesized to facilitate exchange between the different localization machineries. We show that alteration of the SL2a stem-loop structure containing the oskar transport and anchoring signal (TAS) removes an inhibitory effect such that in vitro binding by the RNA transport factor, Egalitarian, is elevated as is in vivo transport from the nurse cells into the oocyte. Cortical anchoring within the oocyte is also enhanced, interfering with posterior localization. We also show that mutation of Staufen recognized structures (SRSs), predicted binding sites for Staufen, disrupts posterior localization of oskar mRNA just as in staufen mutants. Two SRSs in SL2a, one overlapping the Egalitarian binding site, are inferred to mediate Staufen-dependent inhibition of TAS anchoring activity, thereby promoting posterior localization. The other three SRSs in the oskar 3’ UTR are also required for posterior localization, including two located distant from any known transport signal. Staufen, thus, plays multiple roles in localization of oskar mRNA.     

A new genus of Cletopsyllidae (Copepoda,Harpacticoida) from Gulf of Mexico

A new genus and new species of the family Cletopsyllidae Huys & Willems, 1989 from deep-sea sediment in the Gulf of Mexico, are reported and fully described and illustrated. The new genus Pentacletopsyllus (type species: P. montagni sp. n.) can be distinguished from the four known genera of the family by antennule segmentation, length ratio of first and second endopodal segments of P1, and armature pattern on P5 exopod. It also differs from its sister genera by the rostrum being bifid at the tip, third segment of the female antennule having a smooth posterior margin, the baseoendopod of P5 with biarticulate outer setophore bearing basal seta, and female caudal rami without lobate expansion. A revised key to species of the family Cletopsyllidae Huys & Willems, 1989 is provided.     

A megalichthyid sarcopterygian fish from the Lower Permian (Autunian) of the Saar-Nahe Basin,Germany

A nearly complete specimen of a sarcopterygian fish from the Lower Permian (Autunian) of the Saar-Nahe Basin, southwest Germany, is described as a new genus and species of megalichthyids, Palatinichthys laticeps. It is characterized by the following unique list of characters: (1) lacrimal forms lateral margin of external naris, (2) postparietal short with respect to parietal, (3) tabular broad and shorter than supratemporal, (4) anterior margin of median extrascapular very narrow, (5) supraorbitals short, thus parietal and intertemporal participating in formation of orbital margin, (6) distance between external naris and orbit very short, and (7) squamosal abbreviated and deep. A phylogenetic analysis finds a monophyletic Megalichthyidae consisting of two clades, (Palatinichthys nov. gen. + Ectosteorhachis) and [(Megalichthys + Sengoerichthys) + Cladarosymblema)]. The sister taxa Palatinichthys nov. gen. and Ectosteorhachis share a short posterior skull table as a derived character, whereas Megalichthys, Sengoerichthys and Cladarosymblema retain an elongate postorbital region of the skull, regarded as plesiomorphic for “osteolepiforms”. After their nearly worldwide distribution in the Late Devonian and Carboniferous, megalichthyids had become rare in the Permian and have so far been reported only from North America (Ectosteorhachis) and Norway (?Megalichthys). Palatinichthys nov. gen. is a further representative within the European-North American equatorial distribution of megalichthyids during the Permian. It was probably not a common inhabitant of the large Saar-Nahe lakes. Rather, it might have lived in a different habitat within the same general area, such as deltaic streams or rivers.     

HIV,Vascular and Aging Injuries in the Brain of Clinically Stable HIV-Infected Adults: A 1H MRS Study

Background

Cardiovascular disease (CVD) and premature aging have been hypothesized as new risk factors for HIV associated neurocognitive disorders (HAND) in adults with virally-suppressed HIV infection. Moreover, their significance and relation to more classical HAND biomarkers remain unclear.

Methods

92 HIV− infected (HIV+) adults stable on combined antiretroviral therapy (cART) and 30 age-comparable HIV-negative (HIV−) subjects underwent ¹H Magnetic Resonance Spectroscopy (MRS) of the frontal white matter (targeting HIV, normal aging or CVD-related neurochemical injury), caudate nucleus (targeting HIV neurochemical injury), and posterior cingulate cortex (targeting normal/pathological aging, CVD-related neurochemical changes). All also underwent standard neuropsychological (NP) testing. CVD risk scores were calculated. HIV disease biomarkers were collected and cerebrospinal fluid (CSF) neuroinflammation biomarkers were obtained in 38 HIV+ individuals.

Results

Relative to HIV− individuals, HIV+ individuals presented mild MRS alterations: in the frontal white matter: lower N-Acetyl-Aspartate (NAA) (p<.04) and higher myo-inositol (mIo) (p<.04); in the caudate: lower NAA (p = .01); and in the posterior cingulate cortex: higher mIo (p<.008– also significant when Holm-Sidak corrected) and higher Choline/NAA (p<.04). Regression models showed that an HIV*age interaction was associated with lower frontal white matter NAA. CVD risk factors were associated with lower posterior cingulate cortex and caudate NAA in both groups. Past acute CVD events in the HIV+ group were associated with increased mIo in the posterior cingulate cortex. HIV duration was associated with lower caudate NAA; greater CNS cART penetration was associated with lower mIo in the posterior cingulate cortex and the degree of immune recovery on cART was associated with higher NAA in the frontal white matter. CSF neopterin was associated with higher mIo in the posterior cingulate cortex and frontal white matter.

Conclusions

In chronically HIV+ adults with long-term viral suppression, current CVD risk, past CVD and age are independent factors for neuronal injury and inflammation. This suggests a tripartite model of HIV, CVD and age likely driven by chronic inflammation.     

Single Nucleotide Polymorphisms of One-Carbon Metabolism and Cancers of the Esophagus,Stomach, and Liver in a Chinese Population

One-carbon metabolism (folate metabolism) is considered important in carcinogenesis because of its involvement in DNA synthesis and biological methylation reactions. We investigated the associations of single nucleotide polymorphisms (SNPs) in folate metabolic pathway and the risk of three GI cancers in a population-based case-control study in Taixing City, China, with 218 esophageal cancer cases, 206 stomach cancer cases, 204 liver cancer cases, and 415 healthy population controls. Study participants were interviewed with a standardized questionnaire, and blood samples were collected after the interviews. We genotyped SNPs of the MTHFR, MTR, MTRR, DNMT1, and ALDH2 genes, using PCR-RFLP, SNPlex, or TaqMan assays. To account for multiple comparisons and reduce the chances of false reports, we employed semi-Bayes (SB) shrinkage analysis. After shrinkage and adjusting for potential confounding factors, we found positive associations between MTHFR rs1801133 and stomach cancer (any T versus C/C, SB odds-ratio [SBOR]: 1.79, 95% posterior limits: 1.18, 2.71) and liver cancer (SBOR: 1.51, 95% posterior limits: 0.98, 2.32). There was an inverse association between DNMT1 rs2228612 and esophageal cancer (any G versus A/A, SBOR: 0.60, 95% posterior limits: 0.39, 0.94). In addition, we detected potential heterogeneity across alcohol drinking status for ORs relating MTRR rs1801394 to esophageal (posterior homogeneity P = 0.005) and stomach cancer (posterior homogeneity P = 0.004), and ORs relating MTR rs1805087 to liver cancer (posterior homogeneity P = 0.021). Among non-alcohol drinkers, the variant allele (allele G) of these two SNPs was inversely associated with the risk of these cancers; while a positive association was observed among ever-alcohol drinkers. Our results suggest that genetic polymorphisms related to one-carbon metabolism may be associated with cancers of the esophagus, stomach, and liver. Heterogeneity across alcohol consumption status of the associations between MTR/MTRR polymorphisms and these cancers indicates potential interactions between alcohol drinking and one-carbon metabolic pathway.