基于形态特征判定五种鹬类性别的可靠性

快速准确地鉴定两性同型鸟类个体性别在鸟类生态学研究中具有重要意义。本文选择2008年春季迁徙期在崇明东滩停歇的大滨鹬(Calidris tenuirostris)、红腹滨鹬(C.canutus)、红颈滨鹬(C.ruficollis)、尖尾滨鹬(C.acuminata)及翘嘴鹬(Xenus cinereus)5种两性同型的鹬类,用分子生物学方法进行性别鉴定,并基于个体的形态特征(体重、翅长、喙长、头喙长及跗跖长)采用判别分析方法对性别进行判定。结果表明,尖尾滨鹬雄性各形态特征均显著大于雌性,其他4种鹬类则相反。5种鹬类形态特征的性别差异指数在0.5%~25.3%之间,重叠度在29.4%~98.6%之间。5种鹬类判别分析判定性别的准确率在(0.69±0.06)~(0.96±0.01)之间,其中,尖尾滨鹬判别准确率(0.96)最高,翘嘴鹬判别准确率(0.69)最低。形态特征在两性间的差异程度影响性别的判别准确率。另外,两性性比对性别判别的准确率也有影响:性比偏雄性鸟类的雄性判别准确率高于雌性,而性比偏雌性鸟类的雌性判别准确率高于雄性。采用判别分析估测的性比与分子生物学鉴定结果相似,表明判别分析在判定种群的性比方面具有较高的可靠性。     

Morphological sexing of passerines: not valid over larger geographical scales

Sex determination of birds is important for many ecological studies but is often difficult in species with monomorphic plumage. Morphology often provides a possibility for sex determination, but the characters need to be verified. We tested whether five passerine species can be sexed according to standard morphological measurements applying a forward logistic regression with sex determined by molecular analysis as the dependent variable. Furthermore, we tested whether the results can be used on a larger geographic scale by applying morphological sexing methods gained by similar studies from other regions to our data set. Of the five species of this study only Garden Warblers Sylvia borin could not be sexed morphologically. In the Robin Erithacus rubecula, 87.2% of all individuals were sexed correctly. For Reed Warblers Acrocephalus scirpaceus, Willow Warblers Phylloscopus trochilus and Reed Buntings Emberiza schoeniclus, the respective values were 77.6, 89.4 and 86.4%. When the logistic regression functions from similar studies on Robins and Reed Buntings in Denmark and Scotland were applied to the birds from south-western Germany, they performed less well compared to the original dataset of these studies and compared to the logistic regression function of our own study. The same was the case for Willow Warblers when a wing length criterion used in Great Britain was applied to the birds of our study. These discrepancies may have several explanations: (1) the models are optimised for the dataset from which they were extracted, (2) inter-ringer variation in measurements, (3) the use of different age cohorts, (4) different morphology due to different habitat availability around the study site, or, most likely, (5) different morphology due to different migratory behaviour. We recommend that morphological sex differentiation methods similar to this study (1) be only used population specific, (2) only with one age cohort and (3) to adjust the extracted equations from time to time.     

Sexing terns using biometrics: the advantage of within-pair comparisons

Capsule Within-pair comparisons substantially improve the accuracy of sexing from biometrics for two congeneric species of seabird with monomorphic plumage and soft-tissue colouration.

Aims To examine the extent to which statistical limitations of sexing birds from biometrics using sample-level analysis could be overcome by sexing Common and Arctic Terns (Sterna hirundo and S. paradisaea) using measurements obtained from breeding pairs.

Methods Incubating adults were caught at the nest using walk-in traps and wing, tarsus, head-plus-bill, tail length, tail fork, and body mass measured. Each bird was individually colour-ringed and dyed with picric acid, enabling subsequent sexing by behavioural observations of copulation and courtship feeding. Birds were sexed using biometrics and the proportion of birds sexed correctly this way at the sample level was compared with the accuracy achieved if, within a pair, the larger bird was classified as male.

Results Head-plus-bill length was the single most accurate measurement for sexing individuals of both species, and correctly classified 72% of Arctic Terns and 73% of Common Terns. Combinations of measurements derived from discriminant analysis achieved slightly higher accuracy (73% and 78% respectively). Within-pair comparisons were more accurate than sample-level analysis for both single measurements and discriminant functions, and were able to sex 84% of Arctic Terns and 86% of Common Terns correctly.

Conclusion Comparing birds within pairs improves accuracy and can eliminate the need to calculate cut points or discriminant functions from a sample of birds of known sex for each particular study. We strongly advocate such comparisons wherever possible to increase accuracy and simplify computational procedures for predicting sex, thus reducing associated sources of error.     

Molecular sexing of birds: A comparative review of polymerase chain reaction (PCR)-based methods

Accurate identification of sex in birds is important for the management and conservation of avian wildlife in several ways, namely in the development of population, behavioral and ecological studies, as well as in the improvement of ex situ captive breeding programs. In general, nestlings, juveniles and adult birds of a wide number of sexually monomorphic species cannot be sexed based on phenotypic traits. The development of molecular methodologies for avian sexing overcame these difficulties, allowing a reliable gender differentiation for these species. The polymerase chain reaction (PCR)-based methods have been widely applied in molecular sexing of birds, using a large diversity of sex-linked markers. During the last 15 yrs, there was a continuous improvement in the PCR-based protocols for bird sexing, increasing the accuracy, speed and high-throughput applicability of these techniques. The recent advances in real-time PCR platforms and whole genome analysis methods provided new resources for the detection and analysis of novel specific markers and protocols. This review presents a comparative guide of classical and recent advances in PCR-based methods for avian molecular sexing, highlighting its strengths and limitations. Future research opportunities in this field are also addressed.     

DNA barcoding of Dutch birds

The mitochondrial cytochrome c oxidase subunit I (COI) can serve as a fast and accurate marker for the identification of animal species, and has been applied in a number of studies on birds. We here sequenced the COI gene for 387 individuals of 147 species of birds from the Netherlands, with 83 species being represented by > 2 sequences. The Netherlands occupies a small geographic area and 95% of all samples were collected within a 50 km radius from one another. The intraspecific divergences averaged 0.29% among this assemblage, but most values were lower; the interspecific divergences averaged 9.54%. In all, 95% of species were represented by a unique barcode, with 6 species of gulls and skua (Larus and Stercorarius) having at least one shared barcode. This is best explained by these species representing recent radiations with ongoing hybridization. In contrast, one species, the Lesser Whitethroat Sylvia curruca showed deep divergences, averaging 5.76% and up to 8.68% between individuals. These possibly represent two distinct taxa, S. curruca and S. blythi, both clearly separated in a haplotype network analysis. Our study adds to a growing body of DNA barcodes that have become available for birds, and shows that a DNA barcoding approach enables to identify known Dutch bird species with a very high resolution. In addition some species were flagged up for further detailed taxonomic investigation, illustrating that even in ornithologically well-known areas such as the Netherlands, more is to be learned about the birds that are present.     

Sexual size dimorphism and morphometric sexing in a North African population of Laughing Doves Spilopelia senegalensis

Like the majority of Columbiformes, the Laughing Dove Spilopelia senegalensis is sexually monomorphic in plumage, but seems to be slightly dimorphic in size. However, due to the lack of studies little is known about the sexual size dimorphism in this species. In this work, we used morphometric data on a sample of 61 Laughing Doves from southern Tunisia, and sexed using a DNA-based method, to assess size differences between males and females and to determine a discriminant function useful for sex identification. The results showed that wing length was the most dimorphic trait, which could be due to the effects of sexual selection. The best function for the discrimination between sexes included wing length and head length, which is comparable with findings on other dove species. This discriminant function accurately classified 89% of birds, providing a rapid and accurate tool for sex identification in the studied population. Further data from different populations are needed for firmer conclusions about the extent of sexual size dimorphism and the reliability of the morphometric sexing approach in this dove species.     

一种简单通用的鸟类性别分子鉴定技术(简报)

我国幅员辽阔,生物类型多种多样,是世界上拥有鸟类种类最多的国家之一。截至1999年底,已知有鸟类1253种948亚种,隶属于21目83科,其中有多种为我国特有或珍稀濒危的鸟类。近年来由于环境污染、植被破坏及非法捕猎等种种原因,许多鸟类尤其是珍稀鸟类正逐步濒临灭绝。为了加紧保护野生鸟类种群,我们对珍稀鸟类采用了人工饲养、交配等手段以提高繁殖率,并已经在部分鸟类中获得成功。但是,在全世界的鸟类中有50%是单态性鸟。他们的性别不论是在幼鸟还是在成鸟时期,都很难     

一种简单通用的鸟类性别分子鉴定技术（简报）

我国幅员辽阔,生物类型多种多样,是世界上拥有鸟类种类最多的国家之一。截至1999年底,已知有鸟类1253种948亚种,隶属于21目83科,其中有多种为我国特有或珍稀濒危的鸟类。近年来由于环境污染、植被破坏及非法捕猎等种种原因,许多鸟类尤其是珍稀鸟类正逐步濒临灭绝。为了加紧     

Molecular sexing of monomorphic endangered Ara birds

Survival of most endangered birds may depend on breeding programs where sex identification plays an important role. Molecular sexing has shown to be a rapid and safe procedure. In this work we established sex identification of monomorphic endangered Ara birds using a chromosome W-linked DNA marker, the Chromo-helicase-DNA-Binding 1 (CHD) gene. Most birds have two CHD sex-linked genes, one W-linked (CHD-W) and one Z-linked (CHD-Z). These markers were characterized from Ara militaris and gender sex was determined by PCR and restriction analyzes. The procedure here reported was successfully applied to five different species of the genus Ara and confirmed the validity of the technique. To our knowledge, this is the first report of molecular sexing of the Ara species. This molecular sexing is currently been used in breeding programs of Ara birds.     

Conditions for rapid sex determination in 47 avian species by PCR of genomic DNA from blood,shell‐membrane blood vessels,and feathers

The ability to rapidly and reliably determine the sex of birds is very important for successful captive‐bird breeding programs, as well as for field research. Visual inspection of adult birds is sufficient for sexually dimorphic species, but nestlings and monomorphic species are difficult, if not impossible, to sex by sight only. A method for rapid extraction of gDNA from blood, shell‐membrane blood vessels, and fully grown feathers, using Chelex, and the PCR conditions for determination of sex‐specific bands in 47 species (39 genera, 21 families, and 10 orders) are described. The PCR primers used amplify a length of DNA spanning an intron in the CHD‐1 gene, which is present on both the W and Z chromosomes. The intron differs in size between the two sex chromosomes, resulting in PCR products that separate into two bands for females and a single band for males in most avian species (except ratites). Because this simple technique uses Chelex, a rapid gDNA isolation protocol, and sets of PCR primers independent of restriction enzyme digestion, birds can be accurately sexed within 5 hr of sample collection. Zoo Biol 22:561–571, 2003. © 2003 Wiley‐Liss, Inc.     

Using Raspberry Pi microcomputers to remotely monitor birds and collect environmental data

Technological innovations have expanded our ability to understand ecological systems and conserve biodiversity at a time when many species are at risk from climate change and habitat loss. One technology that is predicted to greatly benefit the field of avian ecology is the microcomputer. Raspberry Pi microcomputers are low-cost alternatives to personal computers and are able to house a variety of environmental sensors. Raspberry Pis have recently been used to monitor the behavior of birds in artificial nest cavities. Here, we deploy and assess the ability of five different Raspberry Pi-based devices to record observational and environmental data at avian feeding stations. From January to March 2018, each device generated digital photographs and recorded related temperature and wind speed measurements every 10 s, for three hours per day, at five locations in Stark County, OH, USA. Among photographs taken, 96% were classified as ‘usable’ and no differences were noted in percent of usable photographs among devices (P = .50). In addition, no differences were noted in the mean number of feeder visits of two common birds species detected by devices and detected by a field observer (P = .39 and 0.60). Collectively, temperature measurements recorded by devices were similar to temperatures reported at the Akron-Canton Airport (P = .88), but wind speeds were 1.78 ± 0.12 m/s lower (P < .001) at field sites. Our results demonstrate the ability of Raspberry Pis to remotely monitor birds and collect site-based environmental data in a cost-effective manner. We provide direction for making economical decisions when selecting cameras and temperature sensors without compromising data quality. While our study focuses on birds, our results are generalizable and could provide direction for remotely monitoring a variety of vertebrate and invertebrate taxa.     

Sexing Cape Vulture Gyps coprotheres based on head morphometrics

The Cape Vulture Gyps coprotheres is considered sexually monomorphic in the literature, but visual differences in head shape between the sexes have been observed. Furthermore, head morphometrics of other Gyps species show statistically significant variation between the sexes. We show that head morphometrics can be used to determine the sex of Cape Vultures. Males generally have wider and shorter heads, and larger bill depths than females. Discriminant function analysis with data from 63 individuals identified the three most predictive variables in sex determination to be head width, head length and bill depth. We also provide an equation that can be used in conjunction with head measurements as a method to determine the sex of Cape Vultures in the field with an overall accuracy of 84% (92% accuracy for females and 72% for males).     

Predator-prey relationships and the evolution of colour polymorphism: a comparative analysis in diurnal raptors

Genetically based variation in coloration occurs in populations of many organisms belonging to various taxa, including birds, mammals, frogs, molluscs, insects and plants. Colour polymorphism has evolved in raptors more often than in any other group of birds, suggesting that predator–prey relationships was a driving evolutionary force. Individuals displaying a new invading colour morph may enjoy an initial foraging advantage because prey have difficulties in learning the colour of a rare morph (apostatic selection), or because morphs provide alternative foraging benefits allowing differently coloured individuals to exploit distinct food niches (disruptive selection). Plumage polymorphism should therefore have evolved in species that prey upon animals having the physiological ability to distinguish between differently coloured predators but also to flee once a predator has been detected. From this assumption, we can predict that closely related polymorphic and monomorphic species prey upon different animals. They may also differ in morphology, because foraging upon different prey may require different foraging modes, and in turn different morphological structures. We tested these two predictions in a comparative study of raptors. As expected, polymorphic and monomorphic species had a different diet, and there was a difference in wing length between polymorphic and monomorphic species within two genera ( Buteo and Accipiter ). Across all raptors for which phylogenetic relationships are known, polymorphic species preyed more often upon mammals than did monomorphic ones. These two types of raptor did not differ in the frequency of birds, insects and reptiles in their diets. We discuss these results in the light of the hypothesis that predator–prey relationships played a role in the evolution of colour polymorphism. © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 81 , 565–578.     

Sperm length variation as a predictor of extrapair paternity in passerine birds

Background

The rate of extrapair paternity is a commonly used index for the risk of sperm competition in birds, but paternity data exist for only a few percent of the approximately 10400 extant species. As paternity analyses require extensive field sampling and costly lab work, species coverage in this field will probably not improve much in the foreseeable future. Recent findings from passerine birds, which constitute the largest avian order (∼5 900 species), suggest that sperm phenotypes carry a signature of sperm competition. Here we examine how well standardized measures of sperm length variation can predict the rate of extrapair paternity in passerine birds.

Methodology/Principal Findings

We collected sperm samples from 55 passerine species in Canada and Europe for which extrapair paternity rates were already available from either the same (n = 24) or a different (n = 31) study population. We measured the total length of individual spermatozoa and found that both the coefficient of between-male variation (CV_bm) and within-male variation (CV_wm) in sperm length were strong predictors of the rate of extrapair paternity, explaining as much as 65% and 58%, respectively, of the variation in extrapair paternity among species. However, only the CV_bm predictor was independent of phylogeny, which implies that it can readily be converted into a currency of extrapair paternity without the need for phylogenetic correction.

Conclusion/Significance

We propose the CV_bm index as an alternative measure to extrapair paternity for passerine birds. Given the ease of sperm extraction from male birds in breeding condition, and a modest number of sampled males required for a robust estimate, this new index holds a great potential for mapping the risk of sperm competition across a wide range of passerine birds.     

Sexual dimorphism and dichromatism in Steere's Liocichla (Liocichla steerii)

ABSTRACT.   Although sexual differences in birds can be extreme, differences between males and females in body size and plumage color are more subtle in many species. We used a genetic-based approach to determine the sex of male and female Steere's Liocichla ( Liocichla steerii ) and examine the degree of size dimorphism and plumage dichromatism in this apparently monomorphic species. We found that males were significantly larger than females. In addition, Steere's Liocichla have a prominent yellow plumage patch on the lores that was significantly larger in males than females for both live birds and museum specimens. We also used reflectance spectrometry to quantify the color of the yellow-green breast feathers of Steere's Liocichla and found no significant differences between males and females in brightness, intensity, saturation, or hue. However, females tended to have brighter breast plumage, particularly at long wavelengths. Collectively, these color variables were useful in discriminating birds according to sex when used in a discriminant function analysis. Our study suggests that sexual selection may be more widespread than once assumed, even among birds considered monomorphic, and emphasizes the need for additional data from tropical and subtropical species.     

WHY SHOULD LEK-BREEDERS BE MONOMORPHIC?

Approximately one-quarter of all lek-breeding bird species are sexually monomorphic. Understanding the significance, if any, of this exception to the usual correlation between sexual selection and dimorphism requires detailed data on the mating systems of both monomorphic and dimorphic species. The capuchinbird (Perissocephalus tricolor) is a sexually monomorphic, lek-breeding member of the cotinga family. I studied the social and sexual behavior of this species, and compared it with the Guianan cock-of-the-rock (Rupicola rupicola), a dimorphic, lekking member of the same family. Male–male competition in capuchinbirds involved direct contests for dominance, rather than territorial displays as in classic lek species. In each year, one dominant individual was able to control the most desired display site on the 8-male lek, and was the only male that copulated. In contrast to dimorphic lek birds, female as well as male capuchinbirds engaged in frequent and intense aggression at the lek, and both males and females engaged in sexual mimicry. I suggest that plumage monomorphism in lek birds has evolved as a result of social competition affecting both sexes. This hypothesis accounts for the exaggerated plumage characters shared by males and females in capuchinbirds and a number of other monomorphic lek birds. The evolution of plumage can best be analyzed as an arms race, in which the balance of selective forces acting on each sex can produce a variety of equilibrium states, ranging from sexual indistinguishability to extreme dimorphism.     

Rapid sex determination of a wild passerine species using loop‐mediated isothermal amplification (LAMP)

Many bird species are sexually monomorphic and cannot be sexed based on phenotypic traits. Rapid sex determination is often a necessary component of avian studies focusing on behavior, ecology, evolution, and conservation. While PCR‐based methods are the most common technique for molecularly sexing birds in the laboratory, a simpler, faster, and cheaper method has emerged, which can be used in the laboratory, but importantly also in the field. Herein, we used loop‐mediated isothermal amplification (LAMP) for rapid sex determination of blood samples from juvenile European blackcaps, Sylvia atricapilla, sampled in the wild. We designed LAMP primers unique to S. atricapilla based on the sex chromosome‐specific gene, chromo‐helicase‐DNA‐binding protein (CHD), optimized the primers for laboratory and field application, and then used them to test a subset of wild‐caught juvenile blackcaps of unknown gender at the time of capture. Sex determination results were fast and accurate. The advantages of this technique are that it allows researchers to identify the sex of individual birds within hours of sampling and eliminates the need for direct access to a laboratory if implemented at a remote field site. This work adds to the increasing list of available LAMP primers for different bird species and is a new addition within the Passeriformes order.     

High-throughput real-time PCR and melt curve analysis for sexing Southern Ocean seabirds using fecal samples

Sex identification of birds is of great interest in ecological studies, however this can be very difficult in many species because their external features are almost monomorphic between the sexes. Molecular methodology has simplified this process but limitations still occur with widely accepted methods using polymerase chain reaction and gel electrophoresis, especially when applied to degraded DNA. Real-time polymerase chain reaction assays are emerging as a more efficient, sensitive, and higher throughput means of identification, but there are very few techniques validated using fecal samples and small target sizes. We present a real-time melt curve analysis assay targeting a small region of the CHD-1 gene allowing for high-throughput, sensitive, specific, and easy-to-interpret sexing results for a variety of Southern Ocean seabirds using fecal and tissue samples.     

Sexual size dimorphism and sex identification using morphological traits of two Aegithalidae species

The black-throated tit, Aegithalos concinnus, and long-tailed tit, A. caudatus, are two widely-distributed species of Aegithalidae. They are thought to be monomorphic and thus difficult to differentiate between sexes in the field. We determined the sex of 296 black-throated tits and 129 long-tailed tits using DNA analysis, evaluated their sexual size dimorphism, and developed discriminant models to identify sex based on morphometries, including bill length, bill depth, bill-head length, maximum tarsus length, tarsus width, wing length, tail length, total body length, and body mass. Both species were sexually dimorphic in size, with males having larger measurements than females, except for bill length in black-throated tits, and both bill length and body mass in long-tailed tits. Moreover, both species showed similar sexual size dimorphism (SSD) among the morphological features, with tail length having the highest SSD value. The multivariate discriminant models for sex identification had an accuracy of 82% for both species, which was slightly higher than the best univariate discriminatory model for each species. Because of the complicated nature of the multivariate model, we recommend univariate models for sex identification using D = 0.491 × tail length - 24.498 (accuracy 80%) for black-throated tits and D = 0.807 × wing length - 45.934 (accuracy 78%) for long-tailed tits. Females in both species showed generally higher morphological variation than did males, resulting in lower accuracies in all discriminate functions regardless of univariate or multivariate approach. This could be the result of a sex-biased selective pressure in which males have higher selective pressures for these morphological features.     

Allometry of paracellular absorption in birds

Water-soluble nutrients can be absorbed across the intestinal epithelium by transcellular and paracellular processes. Recent studies suggest that small birds (<180 g) have more extensive paracellular absorption of glucose than nonflying mammals. This may be a feature that compensates for a reduced small intestine size because small birds have smaller mass-corrected intestinal length than do nonflying mammals, but the difference diminishes in larger birds. We hypothesized that if this explanation were correct, there would be a negative correlation between paracellular absorption and body mass in birds and that larger birds would have paracellular absorption comparable to that of nonflying mammals. We tested this hypothesis, using consistent methodology, by measuring the extent of absorption of a series of inert carbohydrate probes in heavier bird species (>300 g) selected from diverse taxa: American coots, mallards, pheasants, and pigeons. Absorption of carbohydrate probes was inversely related to body mass in birds, and absorption of these probes in large birds (>500 g) was comparable to absorption measurements in nonflying mammals. Higher paracellular uptake in the smaller avian species may offer a physiologically inexpensive means of nutrient absorption to compensate for a reduced small intestine size but may make those species more vulnerable to toxicant absorption.