蚜虫基因组DNA提取方法的改进

蚜虫基因组DNA的提取是蚜虫分子生物学研究中的难点。参照动物基因组DNA的提取方法,根据蚜虫体型微小,体表有外骨骼的特点,对SDS法作了改进。改进的方法无需用组织捣碎棒破碎虫体,操作简便。与现在常用的提取方法相比,改进的SDS法能快速、有效地提取单头蚜虫的基因组DNA,适用于RAPD随机引物和测序引物的PCR扩增。     

A Method for the Preparation of Platelets for Transmission Electron Microscopy

A modified method for the preparation of platelets for transmission electron microscopy has been developed. A suspension of platelets in plasma is fixed in glutaraldehyde, immobilized in agarose, and further fixed in osmium tetroxide. The specimen is then dehydrated with alcohol and embedded in Spurr. The key point of this method is the immobilization of the platelet pellet in agarose gel, thus dispensing with the difficulties associated with excessive centrifugation and resuspension of the platelets. Platelets prepared for transmission electron microscopy by this method show excellent preservation of ultrastructure. In addition, this method is relatively rapid, requiring only one day for processing the specimen.     

多QTL定位的压缩估计方法

本文综述了多标记分析和多QTL定位的压缩估计方法。对于前者,Xu（Genetics,2003,163：789—801）首先提出了Bayesian压缩估计方法。其关键在于让每个效应有一个特定的方差参数,而该方差又服从一定的先验分布,以致能从资料中估计之。由此,能够同时估计大量分子标记基因座的遗传效应,即使大多数标记的效应是可忽略的。然而,对于上位性遗传模型,其运算时间还是过长。为此,笔者将上述思想嵌入极大似然法,提出了惩罚最大似然方法。模拟研究显示：该方法能处理变量个数大于样本容量10倍左右的线性遗传模型。对于后者,本文详细介绍了基于固定区间和可变区间的Bayesian压缩估计方法。固定区间方法可处理中等密度的分子标记资料;可变区间方法则可分析高密度分子标记资料,甚至是上位性遗传模型。对于上位性检测,已介绍的惩罚最大似然方法和可变区间Bayesian压缩估计方法可供利用。应当指出,压缩估计方法在今后的eQTL和QTN定位以及基因互作网络分析等研究中也是有应用价值的。     

Shrinkage Estimation Method for Mapping Multiple Quantitative Trait Loci

In this article, shrinkage estimation method for multiple-marker analysis and for mapping multiple quantitative trait loci (QTL) was reviewed. For multiple-marker analysis, Xu (Genetics, 2003, 163:789-801) developed a Bayesian shrinkage estimation (BSE) method. The key to the success of this method is to allow each marker effect have its own variance parameter, which in turn has its own prior distribution so that the variance can be estimated from the data. Under this hierarchical model, a large number of markers can be handled although most of them may have negligible effects. Under epistatic genetic model, however, the running time is very long. To overcome this problem, a novel method of incorporating the idea described above into maximum likelihood, known as penalized likelihood method, was proposed. A simulated study showed that this method can handle a model with multiple effects, which are ten times larger than the sample size. For multiple QTL analysis, two modified versions for the BSE method were introduced: one is the fixed-interval method and another is the variable-interval method. The former deals with markers with intermediate density, and the latter can handle markers with extremely high density as well as model with epistatic effects. For the detection of epistatic effects, penalized likelihood method and the variable-interval approach of the BSE method are available.     

Estimation of the zero shear rate viscosity for dilute solutions of rigid macromolecules with complex configurations

A method for estimating the zero shear rate viscosity for dilute solutions of rigid macromolecules with complex configurations is proposed; this method is based on the macromolecular kinetic theory of Curtiss, Bird, and Hassager. Macromolecular models constructed from a collection of spheres, cylindrical rods, circular discs, and parallelepipeds with arbitrary dimensions and relative orientations can be easily handled by this method. Comparison with available experimental data for several biopolymers shows excellent agreement. As an application to this method, we investigate the effect of surface roughness on the intrinsic viscosity of spherical particles.     

Analysis and Design of an Object-Independent Superlens

A new design for the multilayer superlens, with the sub-wavelength imaging ability for various 2D objects in the visible range, is introduced and analyzed. The designed superlens will be more versatile for practical applications. A rigorous and efficient approach based on the method of moments is used to study the imaging performance of this structure. The imaging performance of the proposed superlens is evaluated using the correlation coefficient. In this work, the closed-form dyadic Green’s functions in spatial domain, needed for the method of moments solutions, are obtained by applying the complex image method. Besides, the numerical integration is exploited to verify this method. The imaging results obtained via our approach are examined by comparison with the finite element method simulations that reveal good efficiency and accuracy of the proposed method.     

Curtis' Substitute for Van Gieson Stain

A triple staining method is described in which nuclear staining is by Weigert's hematoxylin. The cytoplasmic and collagen staining is effected by the Curtis substitute for Van Gieson, in which ponceau S is substituted for acid fuchsin. Nuclear staining is sharper than with Delafield's hematoxylin. The red of the collagen fibers is probably not subject to fading. Unlike Van Gieson, this method gives staining of reticular as well as collagen fibers. The advantages of the method are its simplicity and reliability. The use of this method is made possible by a new source of reliable samples of the ponceau S called for in this method.     

改进的SDS-CTAB法提取濒危植物连香树总DNA

对珍稀濒危植物连香树(Cercidiphyllum japonicum)的6种总DNA提取方法进行了对比试验,结果表明改进的SDS-CTAB法更适合于连香树总DNA提取。该方法提取的DNA经紫外消光值检测,其A260/A280为1.8532,优于CTAB法(1.4872)、SDS法(1.3552)、PVP法(1.5079)、尿素法(1.1858)和高盐低pH法(1.4534)。琼脂糖凝胶电泳和PCR扩增结果也得出同样的结论。     

A new fluorometric assay method for quinolinic acid

A new fluorometric assay method for quinolinic acid is introduced in this study. Quinolinic acid-hydrazine complex, a stable fluorescent compound, is formed after heating quinolinic acid with hydrazine at 215–220°C for 2 min. Fluorescence excitation and emission maxima of the complex are at 285 and 380 nm, respectively. This assay method is rapid and rather sensitive. It takes about 30 min to ascertain the amount of quinolinic acid as low as 50 ng. Specificity of this method is high among biological compounds. An ultrasensitive assay method for uinolinic acid (as low as 20 pg) with diphenylhydrazine instead of hydrazine is also found. After separating the quinolinic acid-diphenylhydrazine complex from residual diphenylhydrazine, this ultrasensitive assay method may be practically applicable.     

A simple graphic method for reconstructing phylogenetic trees from molecular data

A simple graphic method is proposed for reconstructing phylogenetic trees from molecular data. This method is similar to the unweighted pair-group method with arithmetic mean, but the process of computation of average distances and reconstruction of new matrices, required in the latter method, is eliminated from this new method, so that one can reconstruct a phylogenetic tree without using a computer, unless the number of operational taxonomic units is very large. Furthermore, this method allows a phylogenetic tree to have multifurcating branches whenever there is ambiguity with bifurcation.     

A Cladistic Measure of Gene Flow Inferred from the Phylogenies of Alleles

A method for estimating the average level of gene flow among populations is introduced. The method provides an estimate of Nm, where N is the size of each local population in an island model and m is the migration rate. This method depends on knowing the phylogeny of the nonrecombining segments of DNA that are sampled. Given the phylogeny, the geographic location from which each sample is drawn is treated as multistate character with one state for each geographic location. A parsimony criterion applied to the evolution of this character on the phylogeny provides the minimum number of migration events consistent with the phylogeny. Extensive simulations show that the distribution of this minimum number is a simple function of Nm. Assuming the phylogeny is accurately estimated, this method provides an estimate of Nm that is as nearly as accurate as estimates obtained using FST and other statistics when Nm is moderate. Two examples of the use of this method with mitochondrial DNA data are presented.     

构建分子标记连锁图谱的一种新方法：三点自交法

作者从数学上导出了基因作图的三点自交方法。这一方法同用三点测交法一样能提供各种作图信息,但不需要选育三隐性纯合基因亲本或品系,因而能大大提高作图功效。,从理论上证明,该方法也适合于小群体作图分子标记连锁图谱,同时用Ｆisher单一观察信息（即Ｆ信息）量证明,三点自交法是一种有效的作图方法,应用ＭＡＰＭＡＫＥＲ程序中所提供的才鼠Ｆ２群体中３３３个个体的１２个ＲＦＬＰ标记位点中前６个位点的数据对三点自交图图距计算具有与ＭＡＰＭＡＫＥＲ程序一样的功能,而且还提供了位点间的交叉干涉和位点的相引或相斥构型等信息以及紧密位点间发生负干涉作用的证据。     

低背景、高分辨率PAGE简易银染法

聚丙烯酰胺凝胶电泳银染一直存在耗时长、步骤繁琐等缺陷, 是其批量应用的瓶颈。文章报道了一种低背景、高分辨率的PAGE简易银染方法, 该法在降低NaOH浓度和批量显带方面进行了有益的探索, 建立了节省时间、节约试材, 对批量显带尤为实用的简易银染法。     

Combined use of brushing cytology and endoscopic retrograde pancreatography for the early detection of pancreatic cancer

Seventy-two cases of pancreatic cancer were examined by brushing cytology combined with endoscopic retrograde pancreatography. The results of this combined method were better than those reported for the exfoliative cytologic study of pancreatic fluid. The method detected a minute cancer of the main pancreatic duct that was not detected with any other method. The cells obtained by this technique had very well-preserved cytoplasm and nuclear chromatin, which facilitated making a correct diagnosis. Though this method can be applied only to the main pancreatic duct, it is effective for the diagnosis of ductal cell carcinoma, especially those located at the head of the pancreas, which is the most common site for pancreatic cancer. It is a safe procedure, with no complications seen in this series. The differentiation of carcinoma cells from the benign atypical cells of chronic pancreatitis is illustrated and emphasized.     

反向倍增法在生物组织漫射光计算中的应用

本文将反向倍增法和蒙特卡洛法相结合，运用到生物组织漫长反射率和透射率的计算中，并讨论了样品的光学特性以及厚度对计算结果的影响，同时对该方法的使用范围进行了讨论。     

黑斑蛙骨髓细胞染色体标本制备的新方法

染色体标本制备是黑斑蛙分子细胞遗传学研究的基础。为了简化操作程序,缩短实验周期,建立了黑斑蛙染色体制备的一种新方法——骨髓细胞体外短时培养与秋水仙素同步处理法。该方法操作简便,重复性较好,可在较短时间里制备出分裂相较多且形态良好的蛙染色体标本,适用于核型分析、染色体荧光原位杂交、染色体显微分离和单染色体文库构建等多个方面的研究。     

Efficient amplification of multiple transposon-flanking sequences

Transposon mutagenesis is a very useful tool for gene identification in bacteria. Once the transposon mutants of interest are isolated, it is often necessary to identify the sequences that flank the transposon insertions. We devised an efficient method for specific amplification of transposon-flanking sequences that requires the sequence information of only transposon-specific sequences. The basic steps for this method consists of (1) digestion with a restriction enzyme, (2) ligation with a Y-shaped linker and (3) polymerase chain reaction amplification using a transposon-specific primer and a primer specific to the Y-shaped linker. The feasibility of this method was demonstrated with mini-Tn5 mutants of Salmonella typhimurium. We also found that this method can be used for simultaneous amplification of multiple transposon-flanking sequences.     

A highly sensitive assay method for human placental alkaline phosphatase involving a monoclonal antibody bound to a paper disk

A monoclonal antibody which is specific for human placental alkaline phosphatase and does not cross-react at all with intestinal alkaline phosphatase was prepared, and a procedure for the determination of placental alkaline phosphatase activity in serum was developed involving this monoclonal antibody bound to a paper disk. The minimum amount of placental alkaline phosphatase detectable by this method is 0.0025 King-Armstrong unit. Good correlation with the heat-treatment method was obtained. Therefore this proposed method can be used as a routine clinical test for the determination of serum placental alkaline phosphatase.     

Biointeraction analysis of immobilized antibodies and related agents by high-performance immunoaffinity chromatography

A method is described based on high-performance immunoaffinity chromatography for examining the interactions of immobilized antibodies or related binding agents with their targets. It is shown how this method can be used to obtain information on the binding, elution and regeneration kinetics of immobilized binding agents, such as those used with immunoaffinity supports. The theory behind this approach is briefly described and it is demonstrated how both the kinetic and thermodynamic properties of a biointeraction can be determined experimentally through this method. Several applications are used to illustrate this technique, including antibody-antigen interactions and the binding of aptamers with their targets in the presence of silica-based supports. The same approach can be adapted for use with other types of targets, binding agents and support materials.     

水平集方法及其在图像分割上的应用

对图像分割进行研究,是图像处理的一个重要问题。Level Set方法是一处描述曲线以曲率相关的速度演化的有力工具。本文研究了水平集曲线的演化方法,对水平集方法的原理进行了比较详细的阐述,并将其应用于图分割。