Cyclicity of Long-Term Population Dynamics in Dragonflies of the Genus <Emphasis Type="Italic">Sympetrum</Emphasis> (Odonata,Anisoptera) in the Basin of Lake Chany

This work is directed at continuous studies of cyclicity of long-term (1980–2010) population dynamics of odonates in the basin of Lake Chany (in the south of Western Siberia). Four sympatric species of the genus Sympetrum have been investigated by spectral analysis method. The cycle spectra of population dynamics have been constructed for each species; the basic parameters of these cycles (period, phase, and power) have been calculated. Special number cycles have been found for each species. Interspecies differences increased in the direction from high to low frequencies of the spectrum. In the cases of similar cycles, interspecies differences have been shown in the ratio of cycle powers and/or phases: identical phases can indicate the ability of species to increase their number synchronously with any of close species; different phases can indicate the possibility of a small-numbered species to reach its maximum number against the minimum number of numerous species. A comparison of sympatric species spectra of the genera Coenagrion and Sympetrum has led to the conclusion that, the more similarity there is in environmental standards among species inside a genus (as for Sympetrum), the more specific the species frequency spectra are. All species of the genus Sympetrum can synchronize their number fluctuations with 2- to 3 and 4- to 5-year fluctuations of the local climate. Also specific synchronization with important nature-climatic rhythms was found for each species: for S. danae, with an 18-year rhythm of the level of Lake Chany and with a 16-year rhythm of June temperatures; for S. flaveolum, with a 24-year Brickner cycle, with an 8-year cycle of rainfall, and with a 28-year cycle of April and May temperatures; for S. vulgatum, with a 40- to 42-year cycle of the level of Lake Chany, with 12-year cycle of rainfall, and with a 7-year cycle of April and June temperatures; and for S. sanguineum, with a 7-year cycle of April and June temperatures. Perhaps the adaptation mechanism of species to each other and to environments is enclosed in the cyclicity of long-term fluctuations of species number.     

Euchlorocystis gen. nov. and Densicystis gen. nov., Two New Genera of Oocystaceae Algae from High‐altitude Semi‐saline Habitat (Trebouxiophyceae,Chlorophyta)

The Oocystaceae family is generally considered to contain common freshwater eukaryotic microalgae, and few are reported living in semi‐saline habitats. Our latest ecological survey in Qinghai Lake and Angzicuo Lake, both large, closed, high‐altitude, semi‐saline lakes located on the Qinghai‐Tibet plateau in China, revealed Oocystaceae species as a dominant group among plankton. Since limited knowledge exists about semi‐saline species in the Oocystaceae family, a taxonomical study was carried out using morphological and phylogenetic methods. Using this approach, four new strains of Oocystaceae were identified and successfully cultured in the lab. Molecular results correlated with morphological characters and resolved these species into at least three genera. A new genus, Euchlorocystis, with type species Euchlorocystis subsalina, is described here as having the distinctive morphology of multiple pyrenoids per chloroplast among Oocystaceae, and an independent phylogenetic position at the base of the Oocystaceae. Similarly, the genus Densicystis, with type species Densicystis glomerata, is newly proposed here as having a unique colony morphology of dozens or hundreds of little cells tightly embedded in ellipsoid to round mucilage masses. Oocystis marina, originally described from the Baltic Sea, was also identified in Qinghai Lake and Angzicuo Lake and phylogenetically positioned in the semi‐saline clade of the Oocystaceae. The result that a marine species was detected in the closed inland lakes implies a further need to reevaluate the origins of these species.     

<Emphasis Type="Italic">Neocosmocercella fisherae</Emphasis> n. sp. (Nematoda: Cosmocercidae), a parasite of the large intestine of <Emphasis Type="Italic">Phyllomedusa bicolor</Emphasis> (Boddaert) (Anura: Phyllomedusidae) from the Brazilian Amazon

Neocosmocercella fisherae n. sp. is the first nematode species found parasitising Phyllomedusa bicolor from the Brazilian Amazon Region. The new species has a triangular oral opening, with bi-lobed lips, and is distinguished from N. bakeri (triangular oral opening with simple lips), and from N. paraguayensis (hexagonal oral opening with bi-lobed lips). Additionally, the new species has ciliated cephalic papillae, which are absent in the other species of the genus. The reduced uterine sac and the presence of a single egg in the uterus in females are the main morphological characters that differentiate the new species from its congeners N. bakeri (8–10 eggs) and N. paraguayensis (10 eggs, based on the allotype). Additionally, the new species differs from the other two species of the genus by morphometric characters such as the size of spicules and gubernaculum in males and the vagina in females. Until now, phyllomedusid anurans are the only known hosts for the nematodes of this genus. The present work describes the third species of the genus and the first species of nematode parasitising P. bicolor.     

Roles of dilution rate and nitrogen concentration in competition between the cyanobacterium <Emphasis Type="Italic">Microcystis aeruginosa</Emphasis> and the diatom <Emphasis Type="Italic">Cyclotella</Emphasis> sp. in eutrophic lakes

In Lake Tega, Japan, the shift of dominant algal species was caused as a result of discharging water from the adjacent river into the lake. The transition from cyanobacteria (mainly the genus Microcystis) to diatoms (mainly the genus Cyclotella) resulted in a disappearance of algal blooms. Although some environmental conditions such as flow rate, nutrient concentration, and transparency were changed by the project, the decisive factor for the transition has not been clarified yet. For the effective control of algal blooms by water discharge, this study aimed to elucidate the effects of daily renewal rate and nitrogen concentration on the interspecific competition between Microcystis aeruginosa and Cyclotella sp. Monoculture experiments were conducted to obtain growth characteristics for each species and mixed culture experiments were performed to examine their competitive abilities under various daily renewal rates of the culture medium (15 and 30 %) and nitrate concentrations (71.4, 178, and 357 μM). In addition to prepared medium, Lake Tega water was also used for mixed culture experiments. The results showed that the increase in a daily renewal rate contributed to the dominance of Cyclotella sp., while a nitrate concentration had little influence on the competition. We conclude that algal blooms composed of the genus Microcystis would be controlled by maintaining a daily renewal rate up to 30 % or more, which corresponded to the dilution rate of 0.36 day^?1, under a nitrate concentration of ≤357 μM. The study would include essential information for the management of lakes suffering from frequent occurrences of algal blooms.     

Colorless sulfur bacteria <Emphasis Type="Italic">Thioploca</Emphasis> from different sites in Lake Baikal

The colorless sulfur bacteria Thioploca spp. found in Lake Baikal are probably a marker for the influx of subterranean mineralized fluids. Bacteria act as a biological filter; by consuming sulfide in their metabolism, they detoxicate it and maintain the purity of Lake Baikal’s water. The bacteria were investigated by various techniques. According to analysis of the 16S rRNA gene fragment, Thioploca sp. from Frolikha Bay, Baikal belongs to the clade of freshwater species found in Lake Biwa and Lake Constance; it is most closely related to Thioploca ingrica.     

The neglected side of speciation in ancient lakes: phylogeography of an inconspicuous mollusc taxon in lakes Ohrid and Prespa

The morphologically remarkable endemic fauna within ancient lakes has received much attention in the literature. More inconspicuous taxa, however, often lack detailed molecular and morphometrical examination, although their proportion of the endemic fauna of an ancient lake must not be underestimated. Consequently, a better understanding of evolutionary patterns and processes within these lakes requires more knowledge about the often-neglected inconspicuous taxa. In the present study, we focus on the notoriously cryptic pea clam genus Pisidium (Bivalvia: Sphaeriidae). Though the genus is widely distributed, most endemic species are reported only from ancient lakes, including the European ancient sister lake system of Ohrid and Prespa on the Balkan Peninsula. Here we test for the first time hypotheses on the evolution of the endemic pea clams in this European biodiversity hotspot by molecular means. Combining a broad 16S phylogeny (comprising most European pea clam species), network analyses and morphometrical analyses, we found interesting biogeographical patterns and provide evidence for cryptic species in both lakes. Furthermore, we confirmed the proposed sister-species relationship of the endemics P. edlaueri in Lake Ohrid and P. maasseni in Lake Prespa, and we suggest scenarios of the endemic pea clam evolution within both lakes. The patterns of speciation found in the genus Pisidium are compared to patterns in morphologically distinct molluscan groups in lakes Ohrid und Prespa.     

Morphological and molecular taxonomy of <Emphasis Type="Italic">Jahnula dianchia</Emphasis> sp. nov. (Jahnulales) from submerged wood in Dianchi Lake,Yunnan China

In this study, we report the discovery of Jahnula dianchia sp. nov., a freshwater lignicolous fungus belonging to the order Jahnulales (Dothideomycetes, Ascomycota), from a submerged woody substrate from Dianchi Lake, Yunnan, China. Morphologically, this new taxon differs from other species of the genus in ascospore morphology; the ascospores of the new species are dark brown with mammiform apices. We also provide a phylogenetic tree showing the molecular relationships between the new taxon with the previously accepted Jahnula species. The analysis of combined ITS, LSU, and SSU sequence dataset places J. dianchia within the Jahnulales sister to J. sangamonensis. The phylogeny also shows the placement of both strains of J. dianchia in a well-supported independent sub-clade.     

<Emphasis Type="Italic">Natronincola ferrireducens</Emphasis> sp. nov., and <Emphasis Type="Italic">Natronincola peptidovorans</Emphasis> sp. nov., new anaerobic alkaliphilic peptolytic iron-reducing bacteria isolated from soda lakes

Two novel strains of obligately alkaliphilic (pH 7.5–10.2, optimum pH 8.4–8.8) anaerobic spore-forming rod-shaped bacteria, Z-0511 and Z-7031, were isolated from enrichment cultures obtained from the iron-reducing (Lake Khadyn, Tyva) and cellulolytic (Lake Verkhnee Beloe, Buryatia) bacterial communities, respectively. The organisms ferment peptides and do not ferment proteins and amino acids, with the exception of histidine and glutamate utilized by strain Z-0511. The major fermentation products were acetate and propionate for strain Z-0511 and formate and acetate for strain Z-7031, respectively. Carbohydrates and fermentable organic acids could not serve as substrates, except for pyruvate in the case of strain Z-7031. Nitrogen and sulfur compounds were not utilized as electron acceptors by the strains grown on medium with yeast extract. Strain Z-0511 utilized fumarate, crotonate, and EDTA-Fe(III) as electron acceptors. Anthraquinone-2,6-disulfonate (quinone) and Mn(IV) were utilized by both strains, as well as amorphous ferric hydroxide (AFH), which was reduced to iron sesquioxides and magnetite. The presence of AFH stimulated growth; it enhanced the yield of the fermentation products and changed the quantitative ratios of these products. According to a phylogenetic analysis of the 16S rRNA gene sequences and the phenotypic characteristics of the new strains, they were classified as new species of the genus Natronincola, Natronincola ferrireducens sp. nov. Z-0511^T (= VKM B-2402, = DSM 18346) and Natronincola peptidovorans sp. nov. Z-7031^T (= VKM B-2503, = DSM 18979).     

Centric diatoms from Lake Frolikha (Transbaikal area) and peculiarities of distribution of some taxa in Asia

The species composition of centric diatoms from Lake Frolikha (Transbaikal area) has been studied. The lake is located on the eastern shore of Lake Baikal and connected with it by a river. Twenty-three species of Centrophyceae from 7 genera (Aulacoseira, Cyclostephanos, Cyclotella, Discostella, Handmania, Pliocaenicus, and Stephanodiscus) have been found. The most represented genus is Aulacoseira (11 species). Fifteen species and 4 genera are new for the lake record. All revealed species are known in other lakes of the Baikal region; however Baikal endemics are absent in Lake Frolikha. The flora of centric diatoms in Lake Frolikha can be divided into two groups. The first group includes taxa common in Lake Baikal, and the second group includes taxa not typical for Lake Baikal. The level of differences between flora in Lake Baikal and Lake Frolikha is high (43%) despite the close location and connection to the river. An analysis of distribution of interesting species in Asia is presented.     

A review of the genus <Emphasis Type="Italic">Deporaus</Emphasis> (Coleoptera,Rhynchitidae) from the Russian fauna: 1. Subgenera <Emphasis Type="Italic">Pseudapoderites</Emphasis> and <Emphasis Type="Italic">Japonodeporaus</Emphasis>

The genus Deporaus from the Russian fauna is revised. Four species (D. pacatus, D. azarovae, D. septentrionalis, and D. hartmanni) of the subgenera Pseudapoderites and Japonodeporaus are found. Keys to the subgenera and to the species of the subgenus Pseudapoderites are given. The genus Deporaus, subgenera Pseudapoderites and Japonodeporaus, and four species are redescribed. The distribution of these species in Russia is discussed.     

<Emphasis Type="Italic">Anonchotaenia adhiraji</Emphasis> sp.n. (Platyhelminthes:Cestoidea) from a Bird <Emphasis Type="Italic">Hypsipetes madagascarensis</Emphasis> from Arunachal Pradesh,India

The genus Anonchotaenia Cohn, 1900 contains 23 valid species. In this paper Anonchotaenia adhiraji sp.n. obtained from the intestine of a bird Hypsipetes madagascarensis commonly known as black bulbul from Bomdila in Dirang district of Arunachal Pradesh, India is described and illustrated.The species is characterized by a large unarmed, square-shaped scolex; testes 7–8 in number arranged in two lateral groups and a voluminous paruterine organ that differentiates it from the rest of the described species in the genus. This is also the first report of the genus Anonchotaenia Cohn, 1900 from Arunachal Pradesh, India.     

<Emphasis Type="Italic">Thyridariella</Emphasis>, a novel marine fungal genus from India: morphological characterization and phylogeny inferred from multigene DNA sequence analyses

A novel saprobic fungal genus, Thyridariella (Thyridariaceae), is herein described to include Thyridariella mangrovei, the type species and T. mahakoshae spp. nov. Both species were collected as saprobes on decaying wood of Avicennia marina, a common mangrove species found near Kaveri River Delta, Tamil Nadu, on the east coast of India. Thyridariella is diagnosed by having an exclusive combination of characters, such as ascomata with ostiolar necks thickened laterally, hyaline, and centrally constricted muriform ascospores with a single longitudinal septum in each segment and surrounded by a mucilaginous sheath. These characters demarcate these taxa from morphologically similar genera such as Halojulella and Julella. In addition, the new genus also differs from Parathyridaria and Thyridaria in having hyaline, muriform ascospores with distinct mucilaginous sheaths. The monophyly of Thyridariella is well supported in the phylogenetic analysis based on a concatenated dataset from two proteins and three nuclear gene regions. The phylogeny also depicts a sister group relationship of our new genus to Parathyridaria and Thyridaria and hence confirms its position within Thyridariaceae.     

The revision of the validity of genus <Emphasis Type="Italic">Huso</Emphasis> (Acipenseridae) based on recent morphological and genetic data with particular reference to the Kaluga <Emphasis Type="Italic">H. dauricus</Emphasis>

The comparative morphological study in different Acipenseriform species demonstrates that there are only two morphological features combining the kaluga and the great sturgeon and separating them from other sturgeons, namely the shape of a mouth and the manner attaching of gill membranes to isthmus in adult specimens; whereas many morphological characters are different in these species. The relations of morphological similarity/distinction among different sturgeon species and polyphyletic origin of genus Huso revealed by both molecular and cytogenetic studies presume the restoration of initial taxonomic states for the great sturgeon and kaluga as members of the same genus Acipenser, namely A. huso and A. dauricus.     

LTR retrotransposons in the <Emphasis Type="Italic">Aspergillus fumigatus</Emphasis> and <Emphasis Type="Italic">A. nidulans</Emphasis> genomes

Fungi of the genus Aspergillus can infect all tissues and organs, causing invasive mycosis (aspergillosis). This disease can be fatal, especially in immunocompromised patients. Microbiological monitoring of these infectious agents is obligatory in modern medical facilities. Mobile elements can be used as markers to identify the Aspergillus species and strains found indoors as well as to diagnose aspergillosis. Genomic sequences of two Aspergillus species, A. fumigatus and A. nidulans, were analyzed in silico in order to detect LTR retrotransposons. These species were found to considerably differ in the composition of retrotransposon families. One of the families, present in both Aspergillus species, was phylogenetically quite different from all known fungal retrotransposons. The majority of its elements were damaged copies. Nevertheless, allegedly undamaged LTR retrotransposon copies were described that contained intact ORFs and might be active.     

<Emphasis Type="Italic">Calcarisporium xylariicola</Emphasis> sp. nov. and introduction of <Emphasis Type="Italic">Calcarisporiaceae</Emphasis> fam. nov. in Hypocreales

During a survey of fungicolous fungi, a novel taxon from the surface of stroma of an unidentified Xylaria species was collected. Phylogenetic analyses showed that this taxon clustered with Calcarisporium sp. and C. arbuscula isolates, but was resolved as a distinct species. A detailed morphological examination coupled with phylogenetic analysis indicated that the taxon represented a new species. Calcarisporium xylariicola sp. nov. is thus introduced. The new taxon is characterized by short conidiophores with swollen bases and less length/width ratio of conidia that distinguish it from other Calcarisporium species. Calcarisporium is presently placed in Hypocreales genera, incertae sedis genus. Species in the genus are largely fungicolous, or occasionally caulicolous or foliicolous, and have hyaline, erect, verticillate conidiophores and sympodial, polyblastic conidiation. A phylogenetic analysis of combined SSU, ITS, LSU, TEF and RPB2 sequence data from Calcarisporium species and other taxa in Hypocreales indicate that Calcarisporium is a distinct lineage from other families. Therefore, a new family, Calcarisporiaceae, in Hypocreales is introduced.     

Genetic relationships of Chukchi charr <Emphasis Type="Italic">Salvelinus andriashevi</Emphasis> and Taranetz charr <Emphasis Type="Italic">Salvelinus taranetzi</Emphasis>

On the basis of sequence analysis of the mitochondrial DNA (mtDNA) control region (CR), cytochrome b (Cytb), and cytochrome oxidase-1 (CoI) genes, the relationships of endemic species Salvelinus andriashevi Berg, 1948, represented by the only population from Lake Estikhed (Chukotka), were estimated. The data on the genealogical analysis of mtDNA haplotypes supported phylogenetic closeness of S. andriashevi and S. taranetzi. It was also demonstrated that the specimens of Chukchi charr, along with Salvelinus sp. 4 (Lake Nachikinskoe), S. krogiusae (Lake Dal’nee), S. boganidae and S. elgyticus (Lake El’gygytgyn), and S. a. erythrinus from Canada’s Northwest Territories (NWT) belonged to the Arctic group of Taranetz charr. The problem of coincidence of taxonomic differentiation of charrs of the genus Salvelinus based on morphological and genetic analyses is discussed.     

<Emphasis Type="Italic">Eodiaptomus indawgyi</Emphasis> n. sp., a pelagic calanoid copepod presumed endemic to ancient Lake Indawgyi,Myanmar

The little-known prepleistocene Lake Indawgyi (Myanmar) is shown to harbour an endemic pelagicEodiaptomus species, described herein. The area around the lake is inhabited by another species in the same genus. Related species occur throughout South-East Asia, and a presumed close relative is endemic to a chain of pre-pleistocene lakes in Celebes.