Is formalin fixation and ethanol preservation able to influence in geometric morphometric analysis? Fishes as a case study

Geometric morphometric analysis has increased in the recent years, turning into a powerful tool to explore shape and size variation. Several biological studies use specimens that have been through some kind of preservation, mainly formalin preservation, commonly used in biological collections. This study analyzed the effect of preservation in shape on two fish species: Eucinostomus argenteus and Pomadasys corvinaerformis. Twenty-nine individuals of E. argenteus and twenty-five of P. corvinaeformis were collected, photographed twice, preserved in 10 % formalin for 1 week, and then transferred to 70 % ethanol for 83 days. We evaluated three levels of error: (1) error of landmark digitalization, (2) error of taking the picture and storage in JPEG format, and (3) the formalin and ethanol fixation error using Procrustes ANOVA, Discriminant Analysis, and Principal Component Analysis. Significant difference between treatments was observed on both species with Procrustes ANOVA and Discriminant Analysis. In addition, Principal Component Analysis showed a separation between groups of treatment on both species. These results represent the first evidence of preservation effects in studies of geometric morphometrics and show that according to the statistical test utilized, the fixation could affect the shape variations in different ways and could lead the researcher to false results or wrong conclusions. Other methods to explore the shape variation of organisms previously fixed should be tested in order to assess their influence in geometric mophrometric studies.     

Left and right in the amphibian world: which way to develop and where to turn?

The last decade has seen a dramatic increase in studies on the development, function and evolution of asymmetries in vertebrates, including amphibians. Here we discuss current knowledge of behavioral and anatomical asymmetries in amphibians. Behavioral laterality in the response of both adult and larval anurans to presumed predators and competitors is strong and may be related, respectively, to laterality in the telencephalon of adults and the Mauthner neurons of tadpoles. These behavior lateralities, however, do not seem to correlate with visceral asymmetries in the same animals. We briefly compare what is known about the evolution and development of asymmetry in the structure and function of amphibians with what is known about asymmetries in other chordate and non-chordate groups. Available data suggest that the majority of asymmetries in amphibians fall into two independent groups: (1) related to situs viscerum and (2) of a neurobehavioral nature. We find little evidence linking these two groups, which implies different developmental regulatory pathways and independent evolutionary histories for visceral and telencephalic lateralizations. Studies of animals other than standard model species are essential to test hypotheses about the evolution of laterality in amphibians and other chordates.     

Pluralism or unity in biology: could microbes hold the secret to life?

Pluralism is popular among philosophers of biology. This essay argues that negative judgments about universal biology, while understandable, are very premature. Familiar life on Earth represents a single example of life and, most importantly, there are empirical as well as theoretical reasons for suspecting that it may be unrepresentative. Scientifically compelling generalizations about the unity of life (or lack thereof) must await the discovery of forms of life descended from an alternative origin, the most promising candidate being the discovery of extraterrestrial life. Nonetheless, in the absence of additional examples of life, we are best off exploring the microbial world for promising explanatory concepts, principles, and mechanisms rather than prematurely giving up on universal biology. Unicellular microbes (especially prokaryotes) are by far the oldest, metabolically most diverse, and environmentally tolerant form of life on our planet. Yet somewhat ironically, much of our theorizing about life still implicitly privileges complex multicellular eukaryotes, which are now understood to be highly specialized, fragile latecomers to Earth. The problem with pursuing a pluralist approach to understanding life is that it is likely to blind us to the significance of just those entities and causal processes most likely to shed light on the underlying nature of life.     

TGFβ in T cell biology and tumor immunity: Angel or devil?

The evolutionally conserved transforming growth factor β (TGFβ) affects multiple cell types in the immune system by either stimulating or inhibiting their differentiation and function. Studies using transgenic mice with ablation of TGFβ or its receptor have revealed the biological significance of TGFβ signaling in the control of T cells. However, it is now clear that TGFβ is more than an immunosuppressive cytokine. Disruption of TGFβ signaling pathway also leads to impaired generation of certain T cell populations. Therefore, in the normal physiological state, TGFβ actively maintains T cell homeostasis and regulates T cell function. However, in the tumor microenvironment, TGFβ creates an immunosuppressive milieu that inhibits antitumor immunity. Here, we review recent advances in our understanding of the roles of TGFβ in the regulation of T cells and tumor immunity.     

From animal communication to the human language and cognition: evolution or revolution?

The paper discusses the problem of language and cognitive specificity in humans as compared to other species. The main hypotheses of human evolution and the emergence of language seem to be well researched on genetic basis of higher functions. Cognitive abilities of other animals and their communication signals and the main views on basic principles of brain underlying these functions are described.     

Genetics and evolution of phenotypic plasticity to nutrient stress in Arabidopsis: drift,constraints or selection?

To better understand the genetic basis and evolution of phenotypic plasticity, we have investigated how the model plant Arabidopsis thaliana (Brassicaceae) responds to nutrient stress. A preliminary experiment showed that two populations that are very closely related genetically tended to respond in a similar fashion to a variety of nutrient stresses. We then asked if there is a general relationship between the degree of genetic differentiation of 16 natural populations of A. thaliana and the similarity in the way they cope with a fundamental nutrient stress, nitrogen limitation. We also grew plants from four mutant lilies known to be affected in nitrogen uptake and metabolism, using their background isogenic line as a control. This last experiment tested whether or not defects in major genes involved in nitrogen bioprocessing affect the intensity or pattern of phenotypic plasticity. We found a high degree of genetic differentiation among populations for the ability to respond to nitrogen stress. However, we detected no significant correlation between the genetic distance among natural populations and the similarity of their response to low nitrogen availability. Since the genetic distances among populations were measured using neutral molecular markers, this suggests that random genetic drift and other non-deterministic evolutionary phenomena were not the driving force shaping differences among populations in the response to stress. On the other hand, several characters were highly correlated in their responses to nitrogen limitation, suggesting either that they were modified by natural selection in a like manner, or that they are influenced by similar genetic constraints (due to either pleiotropy or tight linkage). Finally, the mutants did not differ from the parental wild type strain in their pattern of nitrogen-induced stress response. Therefore, although the genes defective in the mutants are part of the biochemical pathway that uptakes and metabolizes nitrates, we conclude that they are not involved in the control of phenotypic plasticity to nitrogen limitation in this species.     

Is oral microbiome of children able to maintain resistance and functional stability in response to short-term interference of ingesta?

Dear Editor,A series of studies had focused on the ecological stability of human microbiome (Lozupone et al.,2012;Faith et al.,2013;Moya and Ferrer,2016).Despite the continuous perturbation and the highly personalized composition within the human microbiome (Human Microbiome Project,2012),healthy adults stably maintain their microbial communities in terms of space and time (Faith et al.,2013;Moya and Ferrer,2016;Oh et al.,2016).This stability is proved to be critical for the well-being of human body (Lozupone et al.,2012).On the contrary,major shifts in microbial community composition are often related to diseases (Lynch and Pedersen,2016).     

Light enough to travel or wise enough to stay? Brain size evolution and migratory behavior in birds

Brain size relative to body size is smaller in migratory than in nonmigratory birds. Two mutually nonexclusive hypotheses had been proposed to explain this association. On the one hand, the “energetic trade‐off hypothesis” claims that migratory species were selected to have smaller brains because of the interplay between neural tissue volume and migratory flight. On the other hand, the “behavioral flexibility hypothesis” argues that resident species are selected to have higher cognitive capacities, and therefore larger brains, to enable survival in harsh winters, or to deal with environmental seasonality. Here, I test the validity and setting of these two hypotheses using 1466 globally distributed bird species. First, I show that the negative association between migration distance and relative brain size is very robust across species and phylogeny. Second, I provide strong support for the energetic trade‐off hypothesis, by showing the validity of the trade‐off among long‐distance migratory species alone. Third, using resident and short‐distance migratory species, I demonstrate that environmental harshness is associated with enlarged relative brain size, therefore arguably better cognition. My study provides the strongest comparative support to date for both the energetic trade‐off and the behavioral flexibility hypotheses, and highlights that both mechanisms contribute to brain size evolution, but on different ends of the migratory spectrum.     

Are there general laws for digit evolution in squamates? The loss and re‐evolution of digits in a clade of fossorial lizards (Brachymeles,Scincinae)

Evolutionary simplification of autopodial structures is a major theme in studies of body‐form evolution. Previous studies on amniotes have supported Morse's law, that is, that the first digit reduced is Digit I, followed by Digit V. Furthermore, the question of reversibility for evolutionary digit loss and its implications for “Dollo's law” remains controversial. Here, we provide an analysis of limb and digit evolution for the skink genus Brachymeles. Employing phylogenetic, morphological, osteological, and myological data, we (a) test the hypothesis that digits have re‐evolved, (b) describe patterns of morphological evolution, and (c) investigate whether patterns of digit loss are generalizable across taxa. We found strong statistical support for digit, but not limb re‐evolution. The feet of pentadactyl species of Brachymeles are very similar to those of outgroup species, while the hands of these lineages are modified (2‐3‐3‐3‐2) and a have a reduced set of intrinsic hand muscles. Digit number variation suggests a more labile Digit V than Digit I, contrary to Morse's law. The observed pattern of digit variation is different from that of other scincid lizards (Lerista, Hemiergis, Carlia). Our results present the first evidence of clade‐specific modes of digit reduction.     

Models and practice in medicine: Menopause as syndrome or life transition?

Biomedical knowledge, like scientific knowledge in general, is a product of a social and culture milieu. Moreover, in the analysis of biomedicine a distinction must be maintained between textual and clinical knowledge. Through examination of medical texts and of social science literature, the susceptibility of menopause to numerous interpretations is demonstrated. The generation of clinical models from current information available to physicians is examined and it is suggested that these can be thought of as folk models. Several current clinical models of menopause are presented and the implications for sociological analysis of the subject discussed.