A chloroplast phylogeny of Arisaema (Araceae) illustrates Tertiary floristic links between Asia, North America, and East Africa

The evolution of Arisaema is reconstructed, based on combined sequences (2048 aligned bases) from the chloroplast trnL intron, trnL-trnF spacer, and rpl20-rps12 spacer obtained for species from all 11 sections, including sectional type species and geographically disjunct East African and North American/Mexican species. Analyses were rooted with a representative sample of the closest outgroups, Pinellia and Typhonium, to rigorously test the monophyly of Arisaema. Sections in Arisaema are mostly based on leaf, stem, and inflorescence characters and, with one exception, are not rejected by the molecular data; however, statistical support for sectional relationships in the genus remains poor. Section Tortuosa, which includes eastern North American A. dracontium and Mexican A. macrospathum, is demonstrably polyphyletic. The third New World species, A. triphyllum, also occurs in eastern North America and groups with a different Asian clade than do A. dracontium/A. macrospathum. The genus thus appears to have entered North America twice. Fossil infructescences similar to those of A. triphyllum are known from approximately 18 million-year-old deposits in Washington State and can serve to calibrate a molecular clock. Constraining the age of A. triphyllum to 18 million years (my) and applying either a semiparametric or an ultrametric clock model to the combined data yields an age of approximately 31-49 my for the divergence of A. dracontium/A. macrospathum from their Asian relatives and of 19-32 my for the divergence between African A. schimperianum and a Tibetan/Nepalese relative. The genus thus provides an example of the Oligocene/Miocene floristic links between East Africa, Arabia, the Himalayan region, China, and North America. The phylogeny also suggests secondary loss of the environmental sex determination strategy that characterizes all arisaemas except for two subspecies of A. flavum, which have consistently bisexual spathes. These subspecies are tetraploid and capable of selfing, while a third subspecies of A. flavum is diploid and retains the sex-changing strategy. In the molecular trees, the sex-changing subspecies is sister to the two non-sex-changing ones, and the entire species is not basal in the genus.     

Giant taro and its relatives: a phylogeny of the large genus Alocasia (Araceae) sheds light on Miocene floristic exchange in the Malesian region

Alocasia comprises over 113 species of rainforest understorey plants in Southeast Asia, the Malesian region, and Australia. Several species, including giant taro, Alocasia macrorrhizos, and Chinese taro, Alocasia cucullata, are important food plants or ornamentals. We investigated the biogeography of this genus using plastid and nuclear DNA sequences (5200 nucleotides) from 78 accessions representing 71 species, plus 25 species representing 16 genera of the Pistia clade to which Alocasia belongs. Divergence times were inferred under strict and relaxed clock models, and ancestral areas with Bayesian and maximum likelihood approaches. Alocasia is monophyletic and sister to Colocasiagigantea from the SE Asian mainland, whereas the type species of Colocasia groups with Steudnera and Remusatia, requiring taxonomic realignments. Nuclear and plastid trees show topological conflict, with the nuclear tree reflecting morphological similarities, the plastid tree species' geographic proximity, suggesting chloroplast capture. The ancestor of Alocasia diverged from its mainland sister group c. 24 million years ago, and Borneo then played a central role in the expansion of Alocasia: 11-13 of 18-19 inferred dispersal events originated on Borneo. The Philippines were reached from Borneo 4-5 times in the Late Miocene and Early Pliocene, and the Asian mainland 6-7 times in the Pliocene. Domesticated giant taro originated on the Philippines, Chinese taro on the Asian mainland.     

斑龙芋属(天南星科)及近缘属植物的叶表皮形态

光镜、电镜下观察了天南星科天南星族下斑龙芋属2个种及近缘属13个种植物的叶表皮形态特征。实验结果显示,4属植物的叶表皮组成及其形态特征较相似,属间不存在明显差异,但某些特征在种间存在差异,可作为种的鉴别特征。叶表皮特征支持将单籽犁头尖和昆明犁头尖两个种合并为一个种。15个种的气孔器均具有2个副卫细胞,Stebbins andKhush认为这是气孔器类型中较具2个以上副卫细胞更进化的一种类型,而天南星科大多数族的气孔器都具有2个以上的副卫细胞,这也证明了天南星族是天南星科较进化的族。     

Characters of Leaf Epidermis in Genus Sauromatum (Araceae) and It’s Relative Genera

Leaf epidermis of 2 species in genus Sauromatum Schott were examined under light microscope and scanning electron microscope ( SEM) and compared with that of 13 species in genera Typhonium, Pinellia and Arisaema in the same tribe Area of Araceae . The result reveals that the characters of leaf epidermis between the several genera generally are very similar . However , some of the characters in the species of the same genus are variable and can be used to identify its species . The characters of leaf epidermis support to merge Typhonium kunmingense into Typhonium calcicolum . The stomata apparatus of 15 species are all brachyparacytic types with 2 subsidiary cells . This type of stomata apparatus is considered more evolutional than that with more than 2 subsidiary cells which existed in majority tribes of Araceae . This also verify some taxonomists’viewpoint that tribe Area is more evolutional in family Araceae .     

斑龙芋属(天南星科) 及近缘属植物的叶表皮形态

光镜、电镜下观察了天南星科天南星族下斑龙芋属2 个种及近缘属13 个种植物的叶表皮形态特征。实验结果显示, 4 属植物的叶表皮组成及其形态特征较相似, 属间不存在明显差异, 但某些特征在种间存在差异, 可作为种的鉴别特征。叶表皮特征支持将单籽犁头尖和昆明犁头尖两个种合并为一个种。15 个种的气孔器均具有2 个副卫细胞, Stebbins and Khush 认为这是气孔器类型中较具2 个以上副卫细胞更进化的一种类型, 而天南星科大多数族的气孔器都具有2 个以上的副卫细胞, 这也证明了天南星族是天南星科较进化的族。     

Historical biogeography of the coffee family (Rubiaceae,Gentianales) in Madagascar: case studies from the tribes Knoxieae,Naucleeae, Paederieae and Vanguerieae

Aim In Madagascar the family Rubiaceae includes an estimated 650 species representing 95 genera. As many as 98% of the species and 30% of the genera are endemic. Several factors make the Rubiaceae a model system for developing an understanding of the origins of the Malagasy flora. Ancestral area distributions are explicitly reconstructed for four tribes (Knoxieae, Naucleeae, Paederieae and Vanguerieae) with the aim of understanding how many times, and from where, these groups have originated in Madagascar. Location Indian Ocean Basin, with a focus on Madagascar. Methods Bayesian phylogenetic analyses are conducted on the four tribes. The results are used for reconstructing ancestral areas using dispersal–vicariance analyses. Phylogenetic uncertainties in the reconstructions are accounted for by conducting all analyses on the posterior distribution from the analyses. Results Altogether, 11 arrivals in Madagascar (one in Paederieae, five in Knoxieae, three in Vanguerieae, and two in Naucleeae) are reconstructed. The most common pattern is a dispersal event (followed by vicariance) from Eastern Tropical Africa. The Naucleeae and Paederieae in Madagascar differ and originate from Asia. Numerous out‐of‐Madagascar dispersals, mainly in the dioecious Vanguerieae, are reconstructed. Main conclusions The four tribes arrived several times in Madagascar via dispersal events from Eastern Tropical Africa, Southern Africa and Tropical Asia. The presence of monophyletic groups that include a number of species only found in Madagascar indicates that much endemism in the tribes results from speciation events occurring well after their arrival in Madagascar. Madagascar is the source of origin for almost all Rubiaceae found on the neighbouring islands of the Comoros, Mascarenes and Seychelles.     

Molecular phylogenetic relationships among Lemnaceae and Araceae using the chloroplast trnL-trnF intergenic spacer

We test competing hypotheses of relationships among Aroids (Araceae) and duckweeds (Lemnaceae) using sequences of the trnL-trnF spacer region of the chloroplast genome. Included in the analysis were 22 aroid genera including Pistia and five genera of Lemnaceae including the recently segregated genus Landoltia. Aponogeton was used as an outgroup to root the tree. A data set of 522 aligned nucleotides yielded maximum parsimony and maximum likelihood trees similar to those previously derived from restriction site data. Pistia and the Lemnaceae are placed in two separate and well-supported clades, suggesting at least two independent origins of the floating aquatic growth form within the aroid clade. Within the Lemnaceae there is only partial support for the paradigm of sequential morphological reduction, given that Wolffia is sister to Wolffiella+Lemna. As in the results of the restriction site analysis, pantropical Pistia is placed with Colocasia and Typhonium of southeastern Asia, indicative of Old World affinities. Branch lengths leading to duckweed terminal taxa are much longer relative to other ingroup taxa (including Pistia), evidently as a result of higher rates of nucleotide substitutions and insertion/deletion events. Morphological reduction within the duckweeds roughly correlates with accelerated chloroplast genome evolution.     

犁头尖属及其近缘属植物(天南星科)的花粉形态

利用扫描电镜对犁头尖属（Typhonium Schott）及其近缘属共18种植物的花粉进行研究,其中,8种为首次报道,11种为我国特有。结果表明：天南星族4属植物花粉形态基本一致,无萌发孔,无覆盖层,具刺,但各个种在花粉粒大小,刺长,刺的开关,刺的密度,刺基部直径和刺间纹饰方面差别较大,可以作为种的区别特征之一。花粉形态特征支持天南星族为本科最进化类群的观点。花粉粒刺间具颗粒为半夏属（Pinellia Tenore）植物花粉的显著特征,花粉形态特征不支持将单籽犁头尖（T,calcicolum C.Y.Wues H.Li et al.）和昆明犁头尖（T,kunmingense H,Li）合并。西南犁头尖（T.omeiense H.Li）的花粉粒非常小,认为是较进化的种。犁头尖属内种间的花粉形态差异较大,甚至大于属间的差异,或许该属的系统分类需要作较大的变动,这与Susanne利用cpDNA片段的所提结果基本一致。     

The role of geography and ecological opportunity in the diversification of day geckos (Phelsuma)

We examine the effects of ecological opportunity and geographic area on rates of species accumulation and morphological evolution following archipelago colonization in day geckos (genus Phelsuma) in the Indian Ocean. Using a newly generated molecular phylogeny for the genus, we present evidence that these geckos likely originated on Madagascar, whereas colonization of three archipelagos in the Indian Ocean, the Seychelles, Mascarene, and Comoros Islands has produced three independent monophyletic radiations. We find that rates of species accumulation are not elevated following colonization but are roughly equivalent on all three isolated archipelagos and on the larger island of Madagascar. However, rates of species accumulation have slowed through time on Madagascar. Rates of morphological evolution are higher in both the Mascarene and Seychelles archipelagos compared to rates on Madagascar. This negative relationship between rate of morphological evolution and island area suggests that ecological opportunity is an important factor in diversification of day gecko species.     

A new Australian genus of Araceae, with notes on generic limits and biogeography of the Areae

HAY, A., 1992. A new Australian genus of Araceae, with notes on generic limits and biogeography of the Areae . A monotypic aroid genus is described from Melville Island, Northern Territory, Australia. The genus is diagnosed in the tribe Areae by its tubular spathe base divided into two chambers by an annular septum. The genus is most closely related to Sauromatum and to some Asiatic, not Australian, species of Typhonium . It is proposed that the geography of the Areae (including Arum, Dracunculus etc.) may now suggest a Gondwanan (rather than Laurasian) and hence Cretaceous (rather than much more recent) origin for the tribe, and its dual arrival in Malesia.     

Biogeographical and phylogenetic origins of African fig species (Ficus section Galoglychia)

Ficus section Galoglychia (subgenus Urostigma; Moraceae) includes 72 species restricted to the African floristic region (a few extending to the Arabian Peninsula and Socotra). We present the first molecular phylogenetic analysis of the section including 56 ingroup (representing 44 species) and three outgroup taxa, to investigate its monophyly, classification and evolution. We used sequence data from the nuclear ribosomal internal and external transcribed spacers (ITS and ETS). Our results suggest that section Galoglychia is paraphyletic to the neotropical section Americana, although this is not supported by bootstrap analysis and only weakly supported by Bayesian posterior probabilities. Maximum parsimony analysis conflict with maximum likelihood and Bayesian analyses with respect to the closest relatives of section Americana in Africa. The subsections of section Galoglychia proposed by Berg [Berg, C.C., 1986. Subdivision of Ficus subg. Urostigma sect. Galoglychia (Moraceae). Proc. Kon. Ned. Akad. Wetensch., Ser. C, 89, 121-127] are generally supported. We find two major clades of section Galoglychia within Africa possibly corresponding to two main centres of diversity. One clade comprises members of subsections Platyphyllae and Chlamydodorae, which are more concentrated in Eastern Africa, and extend to Madagascar and neighbouring archipelagos (Comores, Mascarenes, Aldabra Islands and Seychelles). The other main clade includes members of subsections Caulocarpae, Cyathistipulae, Crassicostae and Galoglychia, which are concentrated in West and Central Africa.     

A Study on Aroids in Gaoligong Mountains

高黎贡山是云南与缅甸北部交界的山脉。这一地区的植物区系深受科学界的注意。由于地形险峻,自然植被保存完好,但研究的也较少。高黎贡山是特有现象最丰富的地区。这里有天南星科植物58 种,属于11个属,以南星属为主,含35种。天南星科植物中,10种为高黎贡山所特有,6种为分布到高黎贡山的云南特有种,7种为分布到高黎贡山的中国特有种。植物地理学研究表明高黎贡山的植物区系是东亚植物区系的一部分,是东喜马拉雅植物区系的起源地之一。     

A phylogeny of the oil bee tribe Ctenoplectrini (Hymenoptera: Anthophila) based on mitochondrial and nuclear data: evidence for early Eocene divergence and repeated out-of-Africa dispersal

The bee tribe Ctenoplectrini, with two genera, comprises nine species in tropical Africa and ten in Asia and Australia. Most of them collect floral oil, pollen, and nectar from Cucurbitaceae, but three species are thought to be cleptoparasites. The unusual morphology of Ctenoplectrini has made it difficult to infer their closest relatives, in turn preventing an understanding of these bees' geographic and temporal origin. We used two mitochondrial and two nuclear markers (4741 nucleotides) generated for most of the species to test the monophyly of the tribe, its relationships to other Apidae, and its biogeographic history. Ctenoplectrini are strongly supported as monophyletic and closest to the Long-horned bees, Eucerini. The presumably cleptoparasitic species form a clade (Ctenoplectrina) that is sister to the remaining species (Ctenoplectra), confirming the independent evolution of cleptoparasitism in this tribe. Tree topology and molecular dating together suggest that Ctenoplectrini originated in Africa in the Early Eocene and that Ctenoplectra dispersed twice from Africa to Asia, sometime in the Late Eocene, 30-40 my ago, from where one species reached the Australian continent via Indonesia and New Guinea in the mid-Miocene, c. 13 my ago. Dry and cool mid-Miocene climates also coincide with the divergence between Ctenoplectra bequaerti from West Africa and Ctenoplectra terminalis from East and South Africa, perhaps related to fragmentation of the equatorial African rainforest belt.     

A revision of the higher taxonomy of the Afrotropical freshwater crabs (Decapoda: Brachyura) with a discussion of their biogeography

The higher taxonomy of the 20 known genera of Afrotropical freshwater crabs is revised to reflect the evolutionary relationships revealed by the consensus of a series of recent morphological and molecular phylogenetic studies of the group. The Afrotropical freshwater crab genera fall into two monophyletic groups, one from Socotra with two genera (Potamidae) and another that includes the remaining 18 genera. The latter group, which includes the bulk of the region's freshwater crab fauna, forms a well-supported monophyletic clade. We recognize two monophyletic sister groups (subfamilies) within the Potamonautidae, one for seven genera from Africa (the Potamonautinae) and one for 11 genera from Africa, the Seychelles, and Madagascar (the Deckeniinae). The Deckeniinae includes two monophyletic groups (tribes), one with seven genera from Madagascar (the Hydrothelphusini), and one with four genera from Africa and the Seychelles (the Deckeniini). The Deckeniini is further divided here into two subtribes, the Deckeniina and the Globonautina. The Platythelphusidae is not recognized, and the Deckeniidae and Globonautinae are lowered in rank. There is no phylogenetic support for the continued inclusion of any genus from the Afrotropical region in the Gecarcinucidae which is treated here as an exclusively Oriental family. The Afrotropical freshwater crabs (excluding those from Socotra) form a monophyletic assemblage that has no representatives outside of the region. The wider biogeographical implications of the taxonomic revision are discussed.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 399–413.     

中国滇西天南星科一新种——保山犁头尖

描述了天南星科Araceae南星族Areae犁头尖属Tiphonium Schoa一新种——保山犁头尖Typhonium baoshanense Z.L.Dao ＆ H.Li,它的叶形和佛焰苞形态与犁头尖T.blumei Nicolson ＆ Sivadasan相似,但附属器下部,雄花序之上,有1-2轮不育雄花（退化雄蕊）,雌花序圆锥形,附属器基部截形和佛焰焰苞檐部狭窄而易于区别。同域分布的犁头尖染色体数目为2n=52,本种染色体数目为2n=10,为天南星科的最低染色体基数。     

Inferring the phylogenetic position of Boa constrictor among the Boinae

Snakes of the subfamily Boinae are found in Madagascar, the Papuan-Pacific Islands, and the Neotropics. It has been suggested that genera within each of these particular areas do not form monophyletic groups. Further, it was proposed that the New World Boa constrictor is more closely related to boine genera in Madagascar than to boines in the Neotropics. Along with inferring the relationship of all boine genera using data from the cytochrome b gene and morphology, the placement of Boa was also examined. Phylogenetic inferences using maximum likelihood and Bayesian (BI) methods for combined data analyses and separate analyses of DNA sequence and morphological data were conducted. Priors, parametric bootstraps, and the Shimodaira-Hasegawa test were used to examine the previously proposed placement of Boa with Madagascan taxa using these DNA data. DNA data and combined data analyses strongly reject the hypothesis that Boa is more closely related to Old World genera than to other New World genera. Additionally, strong tree support suggests that all species within Madagascar, the Papuan-Pacific Islands, and the Neotropics each form a monophyletic group with respect to their geographic region.     

Phylogeny reconstruction in the gap between too little and too much divergence: the closest relatives of Senecio jacobaea (Asteraceae) according to DNA sequences and AFLPs

The species composition and molecular phylogeny of Senecio sect. Jacobaea (Asteraceae; Senecioneae) were studied to identify the closest relatives of Senecio jacobaea. Maximum parsimony and Bayesian inference analyses of DNA sequence data of the plastid (the trnT-L igs, the trnL intron, two parts of the trnK intron, and the psbA-trnH igs) and nuclear genome (ITS1, 5.8S, and ITS2) showed these markers to be suitable to assess the species composition of sect. Jacobaea, identifying 24 species as members of this section. Of these, nine species were not previously assigned to the section. The selected DNA sequence regions, however, showed too little sequence divergence to be optimal for phylogenetic inference within sect. Jacobaea. In contrast, AFLPs proved to be too variable to be used to study relationships between the basal lineages in sect. Jacobaea. Nonetheless, these markers are very useful to study the phylogeny of S. jacobaea and its closest relatives. The combined use of DNA sequence data and AFLPs allowed us to take a major step towards resolving phylogenetic relationships in sect. Jacobaea, identifying Senecio alpinus, Senecio pancicii and Senecio subalpinus (using DNA sequence data) or Senecio chrysanthemoides (using AFLPs) as the closest relatives of S. jacobaea.     

Evolution of carnivory in Lentibulariaceae and the Lamiales

As a basis for analysing the evolution of the carnivorous syndrome in Lentibulariaceae (Lamiales), phylogenetic reconstructions were conducted based on coding and non-coding chloroplast DNA (matK gene and flanking trnK intron sequences, totalling about 2.4 kb). A dense taxon sampling including all other major lineages of Lamiales was needed since the closest relatives of Lentibulariaceae and the position of "proto-carnivores" were unknown. Tree inference using maximum parsimony, maximum likelihood, and Bayesian approaches resulted in fully congruent topologies within Lentibulariaceae, whereas relationships among the different lineages of Lamiales were only congruent between likelihood and Bayesian optimizations. Lentibulariaceae and their three genera (Pinguicula, Genlisea, and Utricularia) are monophyletic, with Pinguicula being sister to a Genlisea-Utricularia clade. Likelihood and Bayesian trees converge on Bignoniaceae as sister to Lentibulariaceae, albeit lacking good support. The "proto-carnivores" (Byblidaceae, Martyniaceae) are found in different positions among other Lamiales but not as sister to the carnivorous Lentibulariaceae, which is also supported by Khishino-Hasegawa tests. This implies that carnivory and its preliminary stages ("proto-carnivores") independently evolved more than once among Lamiales. Ancestral states of structural characters connected to the carnivorous syndrome are reconstructed using the molecular tree, and a hypothesis on the evolutionary pathway of the carnivorous syndrome in Lentibulariaceae is presented. Extreme DNA mutational rates found in Utricularia and Genlisea are shown to correspond to their unusual nutritional specialization, thereby hinting at a marked degree of carnivory in these two genera.     

DIVERSITY OF SHOOT MORPHOLOGY IN TYPHONIUM (ARACEAE)

The details of shoot organization, including number of leaves per shoot, position of foliage leaves and cataphylls, position of the lateral continuation shoot, nature of axillary buds and phyllotaxis, and the pattern of shoot extension were observed and compared in five species of Typhonium, Dracunculus vulgaris, Sauromatum venosum, Arum italicum, and Helicodiceros muscivorus, resulting in the recognition of four types of stems. Three of the four types were found in the genus Typhonium. One type was found in Typhonium giganteum and Sauromatum venosum and is presumably the same in Biarum. Another type, found in T. trilobatum, T. blumei, and T. flagelliforme, is distinct in the position of the lateral continuation shoot, which arises from the axil of the n-1 leaf and is adnate to the axis to above the n leaf. Based on the results, two groups, one of which is further subdivided into two subgroups, are recognized in subtribe Arinae (subfam. Aroideae tribe Areae).