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1.
Loquat (Eriobotrya japonica Lindl.) is a subtropical evergreen fruit tree that produces fruits with abundant nutrients and medicinal components. Confirming suitable reference genes for a set of loquat samples before qRT-PCR experiments is essential for the accurate quantification of gene expression. In this study, eight candidate reference genes were selected from our previously published RNA-seq data, and primers for each candidate reference gene were designed and evaluated. The Cq values of the candidate reference genes were calculated by RT-qPCR in 31 different loquat samples, including 12 subgroups of developing or abiotic-stressed tissues. Different combinations of stable reference genes were screened according to a comprehensive rank, which was synthesized from the results of four algorithms, including the geNorm, NormFinder, BestKeeper and ΔCt methods. The screened reference genes were verified by normalizing EjLGA1 in each subgroup. The obtained suitable combinations of reference genes for accurate normalization were GAPDH, EF1α and ACT for floral development; GAPDH, UBCE and ACT for fruit setting; EF1α, GAPDH and eIF2B for fruit ripening; ACT, EF1α and UBCE for leaves under heat stress; eIF2B, UBCE and EF1α for leaves under freezing stress; EF1α, TUA and UBCE for leaves under salt stress; ACT, EF1α and eIF2B for immature pulp under freezing stress; ACT, UBCE and eIF2B for immature seeds under freezing stress; EF1α, eIF2B and UBCE for both immature pulp and seeds under freezing stress; UBCE, TUB and TUA for red-fleshed fruits under cold-storage stress; eIF2B, RPS3 and TUB for white-fleshed fruits under cold-storage stress; and eIF2B, UBCE and RPS3 for both red- and white-fleshed fruits under cold-storage stress. This study obtained different combinations of stable reference genes for accurate normalization in twelve subgroups of developing or abiotic-stressed tissues in loquat. To our knowledge, this is the first report to obtain stable reference genes for normalizing gene expression of abiotic-stressed tissues in E. japonica. The use of the three most stable reference genes could increase the reliability of future quantification experiments.  相似文献   

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The taxonomy of Ropalidia wasps in the Indian subcontinent is revised, recognizing 26 species in the subcontinent. Their diagnostic characteristics are summarized in a key to species. New synonymies proposed in the present study are: R. bicolorata shiva Das and Gupta, 1989 under R. bicolorata van der Vecht, 1962; R. colorata sordida van der Vecht, 1941 under R. colorata van der Vecht, 1941; R. rodialipa Lambert and Narendran, 2005 and R. anupama Lambert and Narendran, 2005, both under R. cyathiformis Fabricius, 1804; R. jacobsoni flavoscutellata Das and Gupta, 1989, and R. bangalorica Lambert and Narendran, 2005, both under R. jacobsoni du Buysson, 1908; R. travancorica Lambert and Narendran, 2005, under R. marginata Lepeletier, 1836; R. sridharani Lambert and Narendran, 2005, under R. rufocollaris Cameron, 1900; Ropalidia rufoplagiata nursei van der Vecht, 1941 under R. rufoplagiata Cameron, 1905; Icaria lugubris Smith, 1858, under R. sumatrae Weber, 1801; and a revised synonymy is Icaria pendula Smith, 1857, under R. variegata Smith, 1852. The new replacement name Ropalidia kasaragodensis Lambert and Narendran is proposed for R. indica Lambert and Narendran, 2005, non van der Vecht, 1941.  相似文献   

4.
The gene (vgb) encoding Vitreoscilla (bacterial) hemoglobin (VHb) was electroporated into Gordonia amarae, where it was stably maintained, and expressed at about 4 nmol VHb g−1 of cells. The maximum cell mass (OD600) of vgb-bearing G. amarae was greater than that of untransformed G. amarae for a variety of media and aeration conditions (2.8-fold under normal aeration and 3.4-fold under limited aeration in rich medium, and 3.5-fold under normal aeration and 3.2-fold under limited aeration in mineral salts medium). The maximum level of trehalose lipid from cultures grown in rich medium plus hexadecane was also increased for the recombinant strain, by 4.0-fold in broth and 1.8-fold in cells under normal aeration and 2.1-fold in broth and 1.4-fold in cells under limited aeration. Maximum overall biosurfactant production was also increased in the engineered strain, by 1.4-fold and 2.4-fold for limited and normal aeration, respectively. The engineered strain may be an improved source for producing purified biosurfactant or an aid to microorganisms bioremediating sparingly soluble contaminants in situ.  相似文献   

5.
Nineteen species of the paper wasp genus Ropalidia are recorded from Vietnam, of which three are new records for Vietnam. A key to all of the species, distribution records and taxonomic remarks are given. New synonymies proposed are: Ropalidia bicolorata parvula van der Vecht, 1962, under R. bicolorata van der Vecht, 1962; R. hongkongensis juncta van der Vecht, 1941, under R. hongkongensis (de Saussure, 1854); Icaria jucunda Cameron, 1898, and R. marginata sundaica van der Vecht, 1941, under R. marginata (Lepeletier, 1836); R. rufocollaris atrata van der Vecht, 1941, under R. rufocollaris (Cameron, 1900); and R. stigma rufa van der Vecht, 1941 and R. stigma nigrolineata van der Vecht, 1962, under R. stigma (Smith, 1858).  相似文献   

6.
Respiration was measured under anaerobiosis in the roots of two Senecio species: S. aquaticus Hill, which is flood-tolerant, and S. jacobaea L., which is flood-intolerant. NADH-oxidation under anaerobiosis was measured in roots of S. aquaticus, S. jacobaea and S. vulgaris L., which is also flood-intolerant. Protein content of S. aquaticus was about 15% higher under anaerobiosis. At 20°C respiration of the roots of S. aquaticus was 50% inhibited under anaerobiosis, while an almost complete inhibition occurred in the roots of S. jacobaea. The activities of nitrate reductase, glutamate dehydrogenase and lactate dehydrogenase were considerably higher in the roots of S. aquaticus grown under anaerobic conditions than in roots grown under aerobic conditions. In S. jacobaea glutamate dehydrogenase activity was lower and in S. vulgaris nitrate reductase was lower and glutamate dehydrogenase activity was higher in roots grown under anaerobic conditions. The possible role of these enzymes for metabolism under anaerobic conditions by oxidizing a surplus of NADH is discussed. Since oxidative phosphorylation is 50% inhibited under anaerobiosis, ATP has to be generated in a different way. It is argued that maintenance of the ATP-level may be compensated by way of the enzymes mentioned above, in combination with a modified glucose utilization.  相似文献   

7.
Changes in growth, photosynthetic pigments, and photosystem II (PS II) photochemical efficiency as well as production of siderophores of Microcystis aeruginosa and Microcystis wesenbergii were determined in this experiment. Results showed growths of M. aeruginosa and M. wesenbergii, measured by means of optical density at 665 nm, were severely inhibited under an iron-limited condition, whereas they thrived under an iron-replete condition. The contents of chlorophyll-a, carotenoid, phycocyanin, and allophycocyanin under an iron-limited condition were lower than those under an iron-replete condition, and they all reached maximal contents on day 4 under the iron-limited condition. PS II photochemical efficiencies (maximal PS II quantum yield), saturating light levels (I k ) and maximal electron transport rates (ETRmax) of M. aeruginosa and M. wesenbergii declined sharply under the iron-limited condition. The PS II photochemical efficiency and ETRmax of M. aeruginosa rose , whereas in the strain of M. wesenbergii, they declined gradually under the iron-replete condition. In addition, I k of M. aeruginosa and M. wesenbergii under the iron-replete condition did not change obviously. Siderophore production of M. aeruginosa was higher than that of M. wesenbergii under the iron-limited condition. It was concluded that M. aeruginosa requires higher iron concentration for physiological and biochemical processes compared with M. wesenbergii, but its tolerance against too high a concentration of iron is weaker than M. wesenbergii.  相似文献   

8.
An engineering tool for controlling flux distribution on metabolic pathways to an appropriate state is highly desirable in bioproduction. An optogenetic switch, which regulates gene expression by light illumination is an attractive on/off switchable system, and is a promising way for flux control with an external stimulus. We demonstrated a light-inducible flux control between glycolysis and the methylglyoxal (MGO) pathway in Escherichia coli using a CcaS/CcaR system. CcaR is phosphorylated by green light and is dephosphorylated by red light. Phosphorylated CcaR induces gene expression under the cpcG2 promoter. The tpiA gene was expressed under the cpcG2 promoter in a genomic tpiA deletion strain. The strain was then cultured with glucose minimum medium under green or red light. We found that tpiA messenger RNA level under green light was four times higher than that under red light. The repression of tpiA expression led to a decrease in glycolytic flux, resulting in slower growth under red light (0.25 hr −1) when compared to green light (0.37 hr −1). The maximum extracellular MGO concentration under red light (0.2 mM) was higher than that under green light (0.05 mM). These phenotypes confirm that the MGO pathway flux was enhanced under red light.  相似文献   

9.
Rhodovulum sulfidophilum produces carotenoids in the spheroidene pathway. Spheroidene monooxygenase, CrtA, catalyzes the conversion of spheroidene to spheroidenone. crtA-deleted mutants of R. sulfidophilum did not produce spheroidenone and demethylspheroidenone. In these mutants, the ratio of demethylspheroidene to spheroidene increased with exposure to light. One mutant exhibiting a spheroidene-predominant phenotype did not grow under anaerobic-light conditions and was devoid of bacteriochlorophyll a, even under semiaerobic-light conditions There was no difference in the growth of the mutants under aerobic-dark conditions. These data suggest that demethylspheroidene is important for photosynthesis in R. sulfidophilum.  相似文献   

10.
Seedling densities and the mortality of fleshy-fruited species under 10 European tall-shrub species and the tree Sorbus aria were analyzed in 10-year-old experimental scrub for one growing season. The mean total densities of seedlings of 18 fleshy-fruited species differed under the different hosts, being highest under Crataegus monogyna, Viburnum opulus and Rosa canina (24–20 m–2); intermediate under Sorbus aria, Rhamnus catharticus, Cornus sanguinea, Ligustrum vulgare and Juniperus communis (17–12 m–2); and lowest under Euonymus europaeus, Viburnum lantana and Prunus spinosa (10–9 m–2). This ranking was similar for the 11 planted species and for nine bird-dispersed, non-planted species which invaded the site, notably Hedera helix and Solanum dulcamara. Within the experimental scrub as a whole mortality of seedlings differed significantly among species, being highest in those with the smallest number of recruits. Mortality ranged from 94% and 89% for Solanum dulcamara and Viburnum opulus to 26% for Hedera helix and Ligustrum vulgare. The mean mortality across all species of seedlings did not differ significantly between host species, although it was slightly higher under Juniperus and Cornus (56%, 53%) and lower under Viburnum lantana and Rhamnus (42%, 41%). In four species, the mortality of seedlings was significantly higher under conspecific adults. Mean topsoil water content after a dry spell was negatively correlated with the diffuse site factor (DSF). The mean density of accumulated seedlings of the most abundant seedling species (Hedera) was positively correlated with the topsoil water content. Densities of other species showed no strong correlations with either topsoil water content or DSF. The probable factors controlling recruitment are discussed.  相似文献   

11.
The abiotic conditions required for eradication of Polymyxa betae, the vector of Beet necrotic yellow vein virus in sugar beet, were investigated. Survival of resting spores of P. betae was determined under aerobic (30 min, 4 days and 21 days) and anaerobic (4 days) conditions under several temperature regimes in a water suspension and in leachate extracted from an aerobic compost heap. In water under aerobic conditions the lethal temperature was 60, 55 and 40°C for exposure times of 30 min, 4 days and 21 days, respectively. The effect of compost leachate and/or anaerobic conditions on survival of P. betae depended on temperature. After incubation for 4 days at 20°C, no significant effects of anaerobic conditions or leachate on the survival of P. betae were found. However, at 40°C for 4 days under anaerobic conditions, survival of P. betae was significantly lower than survival under aerobic conditions in water as well as in leachate. In leachate taken from an aerobic compost heap, aerobically incubated at 40°C for 4 days, survival of P. betae was significantly lower than survival in water at the same temperature. As anaerobic spots are prevalent in aerobic compost heaps, especially during the thermophilic phase, actual inactivation temperatures under composting conditions are likely to be lower than the temperatures we found for eradication in water under aerobic conditions.  相似文献   

12.
Electrophoretograms of turions of dioecious Hydrilla verticillata (L. f.) Royle, run under non-denaturing conditions, had a major complex protein band at Rf0.45 (7.5% acrylamide). Extracts of monoecious plants under similar conditions had major bands at Rf 0.43 and 0.45. The polypeptides which comprise these bands were partially purified and characterized. The major protein fraction in extracts of dioecious turions had a molecular mass of 58 kDa on gel permeation chromatography. Electrophoresis of this fraction under denaturing conditions in the presence of sodium dodecyl sulfate indicated principal bands with molecular masses of 58 and 57 kDa. Extracts from turions of the monoecious biotype had major bands at 59 and 55 kDa after electrophoresis under denaturing conditions. Antisera were raised against the proteins from the dioecious turion at Rf 0.45 after electrophoresis under non-denaturing conditions. When blots of gels run under non-denaturing conditions were probed with these antisera, a complex band was seen at Rf 0.45 for extracts of the dioecious biotype, while bands were observed at Rf 0.43 and 0.45 for the monoecious extracts. After electrophoresis under denaturing conditions, immunoreactive bands were noted at 58 and 57 kDa or 59 and 55 kDa in extracts of dioecious and monoecious turions, respectively. Extracts of leaves and stems of H. verticillata had detectable amounts of immunoreactive proteins, regardless of photoperiod, hence turion production. Related plants with the aquatic habit had immunoreactive proteins in their leaves and organs of perennation [Elodea canadensis Michx., Elodea nuttallii (Planch.) St. John, and Egeria densa Planch., Potamogeton nodosus Poir. and P. pectinatus L.], but the presence of these proteins was not noted in other plants (Zea mays L., Allium cepa L., Spinacia oleracea L., Lemna gibba L., or Solanum tuberosum L.).  相似文献   

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14.
Sapling density, shoot growth, and sapling architecture were studied in five major canopy dominants both under closed canopy and gaps in a warm-temperate rainforest. The five species showed wide variations in distribution, shoot growth, and sapling architecture. Distylium racemosum and Quercus acuta had significantly higher sapling densities under closed canopy than in gaps. Castanopsis sieboldii and Machilus thunbergii had significantly higher sapling densities in gaps than under closed canopy. Quercus salicina showed no significant difference in sapling density between the two habitats. Under closed canopy, C. sieboldii and M. thunbergii had wider crowns than the other species. Distylium racemosum had the greatest number of terminal shoots among the species. Quercus acuta had a branchless small crown. Quercus salicina showed intermediate values in crown width, depth and the number of terminal shoots among the species. Distylium racemosum showed the greatest height-growth rate among the species under the closed canopy, but was the slowest in gaps. Castanopsis sieboldii and M. thunbergii showed the greatest height-growth rates among the species in gaps. Quercus salicina showed the slowest height-growth rates both under closed canopy and gaps. All of the five species showed low mortality under closed canopy. For the major canopy dominants: (i) sapling architecture may not be an important factor in determining mortality but it may be important for height-growth rate; and (ii) sprouting helps saplings to survive until gap formation and facilitates rapid growth in the gaps.  相似文献   

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We compared the potential for compensatory growth of two grass species from the Mongolian steppe that differ in their ability to persist under grazing: the rhizomatous Leymus chinensis and the caespitose Stipa krylovii, and investigated how this ability might be affected by drought. Plants were grown in a greenhouse under wet and dry conditions and subjected to a clipping treatment (biweekly removal of 75–90% of the aerial mass). Leymus exhibited a much stronger compensatory growth after clipping than Stipa. Leymus showed a significant increase in its relative growth rate (RGR) after clipping, while for Stipa RGR was negatively affected. Clipped Leymus plants maintained leaf productivity levels that were similar to undamaged individuals, while leaf-productivity in clipped Stipa dropped to less than half of that of the controls. In Leymus, there was less compensatory growth under dry than under wet conditions, while in Stipa the compensation was increased under drought. This difference probably reflects the fact that Stipa is more drought-tolerant than Leymus. The greater compensatory growth of Leymus compared to Stipa mainly resulted from a greater stimulation of its net assimilation rate (NAR), and its greater capacity to store and reallocate carbohydrates by clipping. The greater increase in NAR was probably the result of a stronger reduction in self-shading, because Leymus shoots were much denser than those of Stipa, which resulted in a higher increase in light penetration to remaining leaves after clipping. The results of this study suggest that the greater ability of Leymus to persist under grazing is the result of its larger capacity for compensatory growth.  相似文献   

17.
The predominantly Holarctic bee genus Osmia Panzer is species‐rich and behaviourally diverse. A robust phylogeny of this genus is important for understanding the evolution of the immense variety of morphological and behavioural traits exhibited by this group. We infer a phylogeny of Osmia using DNA sequence data obtained from three nuclear genes (elongation factor 1‐α, LWrhodopsin and CAD) and the mitochondrial gene COI. Our taxon sampling places special attention on North American members of the subgenus Melanosmia Schmiedeknecht; we discuss the novel placement of a number of species traditionally assigned to O. (Melanosmia) and examine the relative support for alternative classifications of this species‐rich subgenus. We use this new phylogeny to guide a reassessment of morphological and behavioural characters within Osmia. Our results provide support for the recognition of Osmia (Hapsidosmia), subgen.n ., a monotypic subgenus containing Osmia iridis Cockerell & Titus. We synonymize Osmia (Mystacosmia) Snelling under O. (Melanosmia), syn.n . We synonymize Osmia (Acanthosmioides) Ashmead under O. (Melanosmia), syn.n ., propose ‘odontogaster species group’ as a replacement for the subgeneric name Acanthosmioides, and refine the morphological characters that serve to diagnose the species group. We additionally propose ‘nigrifrons species group’ for a clade within O. (Melanosmia) containing most species formerly placed in Osmia (Centrosmia) Robertson. We demonstrate more cohesive patterns of nest substrate use in the nigrifrons and odontogaster species groups than was previously believed to occur, reconsider character polarity of aspects of the female mandible, and show that a large number of morphological characters have evolved convergently within the genus. In order to facilitate discussion of relevant taxa, we propose the following 15 new synonymies: O. bakeri Sandhouse under O. melanopleura Cockerell; O. crenulaticornis Michener under O. pinorum Cockerell; O. claremontensis Michener under O. sedula Sandhouse; O. cockerelli Sandhouse under O. dakotensis Michener; O. francisconis White under O. enixa Sandhouse; O. hurdi White under O. austromaritima Michener; O. sladeni Sandhouse under O. nifoata Cockerell; O. titusi Cockerell under O. phenax Cockerell; O. subtrevoris Cockerell, O. physariae Cockerell, and O. erecta Michener under O. giliarum Cockerell; and O. universitatis Cockerell, O. integrella Cockerell, O. amala Cockerell, and O. metitia Cockerell under O. nigrifrons Cresson, syn.n . We remove O. wyomingensis Michener from synonymy with O. nifoata Cockerell, stat.n ., and O. pinorum Cockerell from synonymy with O. physariae Cockerell, stat.n . This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:A3E7D63B‐5C4C‐4ACF‐BF33‐48E5C5DD1B0D .  相似文献   

18.
Most wrasse species swim during the day and bury themselves in the sandy bottoms of shallow reefs at night. This study aimed to evaluate the importance of sandy bottoms to the day-active/night-inactive rhythmicity of the tropical wrasse Halichoeres trimaculatus. Actogram analysis revealed that fish were active during the photophase and inactive during the scotophase in aquariums with both sandy and bare bottoms. When fish were kept in aquariums with bare bottoms, rhythmicity was maintained under constant dark conditions (DD) but became obscured under constant light conditions (LL), suggesting that a day-active/night-inactive rhythmicity is regulated by the circadian system. Robust fluctuations in Period1 (wPer1) and Period2 (wPer2) expression were observed in the pectoral fin tissue under light–dark conditions (LD). Similar fluctuations in wPer1 expression persisted under DD. When fish were kept under LD conditions for 7 days and then DD for 20 days, the emergence of fish from the sandy bottom was delayed gradually. At the same time, the peak time of wPer1 expression under DD was retarded from 06:00 to 10:00. Although wPer2 expression was dampened under DD, it increased after exposing fish to light. These results suggest that wPer1 and wPer2 are differentially involved in the day-active/night-inactive rhythmicity, and that blocking light with a sandy bed at night and exposing fish to light during emergence in the morning play important roles in maintaining consistent activities in wrasse species.  相似文献   

19.
Although nitrate is a macronutrient and can serve as good nitrogen source for many species of phytoplankton, high nitrate concentrations do not benefit the growth of phytoplankton. We hypothesise that algae cultured under high nitrate concentrations can accumulate intracellular nitrite, which is produced by nitrate reductase (NR) and can inhibit the growth of algae. To assess the validity of this hypothesis, Microcystis aeruginosa was grown under different nitrate concentrations from 3.57 to 21.43 mM in low CO2 and high CO2 conditions for 15 days. We observed that, with increasing nitrate concentrations, the intracellular nitrite concentrations of the alga increased and the growth rates and photosynthesis declined. When grown under high CO2 conditions, M. aeruginosa showed lower intracellular nitrite concentrations and higher growth rates and \textP\textm\textchla {\text{P}}_{\text{m}}^{{\text{chl}}a} , \textR\textd\textchla {\text{R}}_{\text{d}}^{{\text{chl}}a} , αchla than under low CO2 conditions. These results suggest that the accumulation of intracellular nitrite could be the cause of inhibition of algal growth under high nitrate concentrations.  相似文献   

20.
We have studied the effects of nitrate supply under photosynthetic active radiation (PAR) plus ultraviolet radiation (UVR) exposure on photosynthetic pigments (chlorophyll a and carotenoids), photoprotective UV screen mycosporine-like amino acids (MAAs), and photosynthetic parameters, including the maximum quantum yield (F v/F m) and electron transport rate (ETR) on the red agarophyte Gracilaria tenuistipitata. Apical tips of G. tenuistipitata were cultivated under ten different concentrations of NO3 for 7 days. It has been shown that G. tenuistipitata cultured under laboratory conditions has the ability to accumulate high amounts of MAAs following a nitrate concentration-dependent manner under PAR + UVR. Two MAAs were identified, shinorine and porphyra-334. The relative concentration of the first increased under high concentrations of nitrate, while the second one decreased. The presence of antheraxanthin is reported for the first time in this macroalgae, which also contains zeaxanthin, lutein, and β-carotene. The accumulation of pigments, photoprotective compounds, and photosynthetic parameters of G. tenuistipitata is directly related to N availability. All variables decreased under low N supplies and reached constant maximum values with supplements higher than 0.5 mM NO3. Our results suggest a high potential to acclimation and photoprotection against stress factors (including high PAR and UVR) directly related to N availability for G. tenuistipitata.  相似文献   

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