The response of soil organic carbon of a rich fen peatland in interior Alaska to projected climate change

It is important to understand the fate of carbon in boreal peatland soils in response to climate change because a substantial change in release of this carbon as CO₂ and CH₄ could influence the climate system. The goal of this research was to synthesize the results of a field water table manipulation experiment conducted in a boreal rich fen into a process‐based model to understand how soil organic carbon (SOC) of the rich fen might respond to projected climate change. This model, the peatland version of the dynamic organic soil Terrestrial Ecosystem Model (peatland DOS‐TEM), was calibrated with data collected during 2005–2011 from the control treatment of a boreal rich fen in the Alaska Peatland Experiment (APEX). The performance of the model was validated with the experimental data measured from the raised and lowered water‐table treatments of APEX during the same period. The model was then applied to simulate future SOC dynamics of the rich fen control site under various CO₂ emission scenarios. The results across these emissions scenarios suggest that the rate of SOC sequestration in the rich fen will increase between year 2012 and 2061 because the effects of warming increase heterotrophic respiration less than they increase carbon inputs via production. However, after 2061, the rate of SOC sequestration will be weakened and, as a result, the rich fen will likely become a carbon source to the atmosphere between 2062 and 2099. During this period, the effects of projected warming increase respiration so that it is greater than carbon inputs via production. Although changes in precipitation alone had relatively little effect on the dynamics of SOC, changes in precipitation did interact with warming to influence SOC dynamics for some climate scenarios.     

Climate change drives a shift in peatland ecosystem plant community: Implications for ecosystem function and stability

The composition of a peatland plant community has considerable effect on a range of ecosystem functions. Peatland plant community structure is predicted to change under future climate change, making the quantification of the direction and magnitude of this change a research priority. We subjected intact, replicated vegetated poor fen peat monoliths to elevated temperatures, increased atmospheric carbon dioxide (CO₂), and two water table levels in a factorial design to determine the individual and synergistic effects of climate change factors on the poor fen plant community composition. We identify three indicators of a regime shift occurring in our experimental poor fen system under climate change: nonlinear decline of Sphagnum at temperatures 8 °C above ambient conditions, concomitant increases in Carex spp. at temperatures 4 °C above ambient conditions suggesting a weakening of Sphagnum feedbacks on peat accumulation, and increased variance of the plant community composition and pore water pH through time. A temperature increase of +4 °C appeared to be a threshold for increased vascular plant abundance; however the magnitude of change was species dependent. Elevated temperature combined with elevated CO₂ had a synergistic effect on large graminoid species abundance, with a 15 times increase as compared to control conditions. Community analyses suggested that the balance between dominant plant species was tipped from Sphagnum to a graminoid‐dominated system by the combination of climate change factors. Our findings indicate that changes in peatland plant community composition are likely under future climate change conditions, with a demonstrated shift toward a dominance of graminoid species in poor fens.     

Suppression of methanogenesis by dissimilatory Fe(III)-reducing bacteria in tropical rain forest soils: implications for ecosystem methane flux

Tropical forests are an important source of atmospheric methane (CH₄), and recent work suggests that CH₄ fluxes from humid tropical environments are driven by variations in CH₄ production, rather than by bacterial CH₄ oxidation. Competition for acetate between methanogenic archaea and Fe(III)‐reducing bacteria is one of the principal controls on CH₄ flux in many Fe‐rich anoxic environments. Upland humid tropical forests are also abundant in Fe and are characterized by high organic matter inputs, steep soil oxygen (O₂) gradients, and fluctuating redox conditions, yielding concomitant methanogenesis and bacterial Fe(III) reduction. However, whether Fe(III)‐reducing bacteria coexist with methanogens or competitively suppress methanogenic acetate use in wet tropical soils is uncertain. To address this question, we conducted a process‐based laboratory experiment to determine if competition for acetate between methanogens and Fe(III)‐reducing bacteria influenced CH₄ production and C isotope composition in humid tropical forest soils. We collected soils from a poor to moderately drained upland rain forest and incubated them with combinations of ¹³C‐bicarbonate, ¹³C‐methyl labeled acetate (¹³CH₃COO^?), poorly crystalline Fe(III), or fluoroacetate. CH₄ production showed a greater proportional increase than Fe²⁺ production after competition for acetate was alleviated, suggesting that Fe(III)‐reducing bacteria were suppressing methanogenesis. Methanogenesis increased by approximately 67 times while Fe²⁺ production only doubled after the addition of ¹³CH₃COO^?. Large increases in both CH₄ and Fe²⁺ production also indicate that the two process were acetate limited, suggesting that acetate may be a key substrate for anoxic carbon (C) metabolism in humid tropical forest soils. C isotope analysis suggests that competition for acetate was not the only factor driving CH₄ production, as ¹³C partitioning did not vary significantly between ¹³CH₃COO^? and ¹³CH₃COO^?+Fe(III) treatments. This suggests that dissimilatory Fe(III)‐reduction suppressed both hydrogenotrophic and aceticlastic methanogenesis. These findings have implications for understanding the CH₄ biogeochemistry of highly weathered wet tropical soils, where CH₄ efflux is driven largely by CH₄ production.     

Environmental controls of temporal and spatial variability in CO2 and CH4 fluxes in a neotropical peatland

Tropical peatlands play an important role in the global storage and cycling of carbon (C) but information on carbon dioxide (CO₂) and methane (CH₄) fluxes from these systems is sparse, particularly in the Neotropics. We quantified short and long‐term temporal and small scale spatial variation in CO₂ and CH₄ fluxes from three contrasting vegetation communities in a domed ombrotrophic peatland in Panama. There was significant variation in CO₂ fluxes among vegetation communities in the order Campnosperma panamensis > Raphia taedigera > Cyperus. There was no consistent variation among sites and no discernible seasonal pattern of CH₄ flux despite the considerable range of values recorded (e.g. ?1.0 to 12.6 mg m^?2 h^?1 in 2007). CO₂ fluxes varied seasonally in 2007, being greatest in drier periods (300–400 mg m^?2 h^?1) and lowest during the wet period (60–132 mg m^?2 h^?1) while very high emissions were found during the 2009 wet period, suggesting that peak CO₂ fluxes may occur following both low and high rainfall. In contrast, only weak relationships between CH₄ flux and rainfall (positive at the C. panamensis site) and solar radiation (negative at the C. panamensis and Cyperus sites) was found. CO₂ fluxes showed a diurnal pattern across sites and at the Cyperus sp. site CO₂ and CH₄ fluxes were positively correlated. The amount of dissolved carbon and nutrients were strong predictors of small scale within‐site variability in gas release but the effect was site‐specific. We conclude that (i) temporal variability in CO₂ was greater than variation among vegetation communities; (ii) rainfall may be a good predictor of CO₂ emissions from tropical peatlands but temporal variation in CH₄ does not follow seasonal rainfall patterns; and (iii) diurnal variation in CO₂ fluxes across different vegetation communities can be described by a Fourier model.     

Contribution of subsurface peat to CO2 and CH4 fluxes in a neotropical peatland

Tropical peatlands play an important role in the global carbon cycling but little is known about factors regulating carbon dioxide (CO₂) and methane (CH₄) fluxes from these ecosystems. Here, we test the hypotheses that (i) CO₂ and CH₄ are produced mainly from surface peat and (ii) that the contribution of subsurface peat to net C emissions is governed by substrate availability. To achieve this, in situ and ex situ CO₂ and CH₄ fluxes were determined throughout the peat profiles under three vegetation types along a nutrient gradient in a tropical ombrotrophic peatland in Panama. The peat was also characterized with respect to its organic composition using ¹³C solid state cross‐polarization magic‐angle spinning nuclear magnetic resonance spectroscopy. Deep peat contributed substantially to CO₂ effluxes both with respect to actual in situ and potential ex situ fluxes. CH₄ was produced throughout the peat profile with distinct subsurface peaks, but net emission was limited by oxidation in the surface layers. CO₂ and CH₄ production were strongly substrate‐limited and a large proportion of the variance in their production (30% and 63%, respectively) was related to the quantity of carbohydrates in the peat. Furthermore, CO₂ and CH₄ production differed between vegetation types, suggesting that the quality of plant‐derived carbon inputs is an important driver of trace gas production throughout the peat profile. We conclude that the production of both CO₂ and CH₄ from subsurface peat is a substantial component of the net efflux of these gases, but that gas production through the peat profile is regulated in part by the degree of decomposition of the peat.     

Enhanced winter soil frost reduces methane emission during the subsequent growing season in a boreal peatland

Winter climate change may result in reduced snow cover and could, consequently, alter the soil frost regime and biogeochemical processes underlying the exchange of methane (CH₄) in boreal peatlands. In this study, we investigated the short‐term (1–3 years) vs. long‐term (11 years) effects of intensified winter soil frost (induced by experimental snow exclusion) on CH₄ exchange during the following growing season in a boreal peatland. In the first 3 years (2004–2006), lower CH₄ emissions in the treatment plots relative to the control coincided with delayed soil temperature increase in the treatment plots at the beginning of the growing season (May). After 11 treatment years (in 2014), CH₄ emissions were lower in the treatment plots relative to the control over the entire growing season, resulting in a reduction in total growing season CH₄ emission by 27%. From May to July 2014, reduced sedge leaf area coincided with lower CH₄ emissions in the treatment plots compared to the control. From July to August, lower dissolved organic carbon concentrations in the pore water of the treatment plots explained 72% of the differences in CH₄ emission between control and treatment. In addition, greater Sphagnum moss growth in the treatment plots resulted in a larger distance between the moss surface and the water table (i.e., increasing the oxic layer) which may have enhanced the CH₄ oxidation potential in the treatment plots relative to the control in 2014. The differences in vegetation might also explain the lower temperature sensitivity of CH₄ emission observed in the treatment plots relative to the control. Overall, this study suggests that greater soil frost, associated with future winter climate change, might substantially reduce the growing season CH₄ emission in boreal peatlands through altering vegetation dynamics and subsequently causing vegetation‐mediated effects on CH₄ exchange.     

Methane emission from a wetland plant: the role of CH4 oxidation in Eriophorum

The importance of plant-mediated CH₄ transport was studied in a northern wetland. CH₄ transport through Eriophorum, a dominant sedge, was found to be the major pathway for CH₄ fluxes. Mean emission from Sphagnum lawns was low (34 g CH₄ m^-2 h^-1) and significantly higher from tussocks of Eriophorum vaginatum (974 g CH₄ m^-2 h^-1; U-test, p < 0.05). Mean flux from single tillers of Eriophorum angustifolium was 92 g CH₄ h^-1. In contrast to other ecosystems, no CH₄ oxidation was associated with Eriophorum. Hence, the lack of oxidation is one reason for the high emission rates from these ecosystems. This finding is a caveat for models of CH₄ emission and may also have consequences for carbon flow models of northern wetlands.     

The effect of experimental ecosystem warming on CO2 fluxes in a montane meadow

Climatic change is predicted to alter rates of soil respiration and assimilation of carbon by plants. Net loss of carbon from ecosystems would form a positive feedback enhancing anthropogenic global warming. We tested the effect of increased heat input, one of the most certain impacts of global warming, on net ecosystem carbon exchange in a Rocky Mountain montane meadow. Overhead heaters were used to increase the radiative heat flux into plots spanning a moisture and vegetation gradient. We measured net whole-ecosystem CO₂ fluxes using a closed-path chamber system, relatively nondisturbing bases, and a simple model to compensate for both slow chamber leaks and the CO₂ concentration-dependence of photosynthetic uptake, in 1993 and 1994. In 1994, we also measured soil respiration separately. The heating treatment altered the timing and magnitude of net carbon fluxes into the dry zone of the plots in 1993 (reducing uptake by ≈100 g carbon m^–2), but had an undetectable effect on carbon fluxes into the moist zone. During a strong drought year (1994), heating altered the timing, but did not significantly alter the cumulative magnitude, of net carbon uptake in the dry zone. Soil respiration measurements showed that when differences were detected in dry zone carbon fluxes, they were caused by changes in carbon input from photosynthesis, not by temperature-driven changes in carbon output from soil respiration. When differences were detected in dry-zone carbon fluxes, they were caused by changes in carbon input from photosynthesis, not by a temperature-driven changes in carbon output from soil respiration. Regression analysis suggested that the reduction in carbon inputs from plants was due to a combination of two soil moisture effects: a direct physiological response to decreased soil moisture, and a shift in plant community composition from high-productivity species to low-productivity species that are more drought tolerant. These results partially support predictions that warming may cause net carbon losses from some terrestrial ecosystems. They also suggest, however, that changes in soil moisture caused by global warming may be as important in driving ecosystem response as the direct effects of increased soil temperature.     

Agricultural peatland restoration: effects of land‐use change on greenhouse gas (CO2 and CH4) fluxes in the Sacramento‐San Joaquin Delta

Agricultural drainage of organic soils has resulted in vast soil subsidence and contributed to increased atmospheric carbon dioxide (CO₂) concentrations. The Sacramento‐San Joaquin Delta in California was drained over a century ago for agriculture and human settlement and has since experienced subsidence rates that are among the highest in the world. It is recognized that drained agriculture in the Delta is unsustainable in the long‐term, and to help reverse subsidence and capture carbon (C) there is an interest in restoring drained agricultural land‐use types to flooded conditions. However, flooding may increase methane (CH₄) emissions. We conducted a full year of simultaneous eddy covariance measurements at two conventional drained agricultural peatlands (a pasture and a corn field) and three flooded land‐use types (a rice paddy and two restored wetlands) to assess the impact of drained to flooded land‐use change on CO₂ and CH₄ fluxes in the Delta. We found that the drained sites were net C and greenhouse gas (GHG) sources, releasing up to 341 g C m^?2 yr^?1 as CO₂ and 11.4 g C m^?2 yr^?1 as CH₄. Conversely, the restored wetlands were net sinks of atmospheric CO₂, sequestering up to 397 g C m^?2 yr^?1. However, they were large sources of CH₄, with emissions ranging from 39 to 53 g C m^?2 yr^?1. In terms of the full GHG budget, the restored wetlands could be either GHG sources or sinks. Although the rice paddy was a small atmospheric CO₂ sink, when considering harvest and CH₄ emissions, it acted as both a C and GHG source. Annual photosynthesis was similar between sites, but flooding at the restored sites inhibited ecosystem respiration, making them net CO₂ sinks. This study suggests that converting drained agricultural peat soils to flooded land‐use types can help reduce or reverse soil subsidence and reduce GHG emissions.     

Microbial growth by a net heat up-take: a calorimetric and thermodynamic study on acetotrophic methanogenesis by Methanosarcina barkeri

To answer the intriguing question whether or not endothermic microbial growth exists, and in particular, to verify Heijnen and van Dijken's prediction (1992), acetotrophic methanogen, Methanosarcina barkeri, has been cultivated in a highly sensitive bench-scale calorimeter (an improved Bio-RC1 reaction calorimeter) in a pH auxostat fashion. A growth yield of 0.043 C-mol C-mol(-1) has been obtained and a cell density as high as 3 g L(-1) was attained. Heat uptake during growth has indeed been quantitatively measured with calorimetry, resulting in a heat yield of +145 kJ C-mol(-1). Thermodynamics of the growth of acetotrophic methanogens was analyzed in detail. The changes in Gibbs energy, enthalpy, and entropy during growth of M. barkeri were compared with some typical aerobic and anaerobic growth processes of different microorganisms on various substrates. In the growth of M. barkeri on acetate, the retarding effect of the positive enthalpy change on the driving force of growth is overcompensated by the large positive entropy change, resulting from converting one organic molecule (acetic acid) to two gaseous products, CH(4) and CO(2). Both the enthalpy and the entropy increases are due partially to the transition of these two products into the gaseous phase. The thermodynamic role of this phase transition for the growth process is analyzed. Microbial growth characterized by enthalpy increase and correspondingly by a large increase in entropy may be called enthalpy-retarded growth.     

The role of Eriophorum vaginatum in CH4 flux from an ombrotrophic peatland

Vegetation composition was found to be an important factor controlling CH₄ emission from an ombrotrophic peatland in the UK, with significantly greater (P < 0.01) CH₄ released from areas containing both Eriophorum vaginatumL. and Sphagnum, than from similar areas without E. vaginatum. Positive correlations were observed between the amount of E. vaginatum and CH₄ emission, with the best predictor of flux being the amount of below-ground biomass of this species (r ² = 0.93). A cutting experiment revealed that there was no significant difference (P > 0.05) in CH₄ flux between plots with E. vaginatum stems cut above the water table and plots with intact vegetation, yet there was a 56% mean reduction in CH₄ efflux where stems were cut below the water table (P < 0.05). The effect of E. vaginatum on CH₄ release was mimicked by the presence of inert glass tubes. These findings suggest that the main short-term role of E. vaginatum in the ecosystem is simply as a conduit for CH₄ release. The longer-term importance of E. vaginatum in controlling CH₄ fluxes through C substrate input was suggested by the positive correlation between the night-time CO₂ and CH₄ fluxes (r ² = 0.70), which only occurred when the vegetation was not senescent. This revised version was published online in June 2006 with corrections to the Cover Date.     

Stimulation of both photosynthesis and respiration in response to warmer and drier conditions in a boreal peatland ecosystem

Peatland ecosystems have been consistent carbon (C) sinks for millennia, but it has been predicted that exposure to warmer temperatures and drier conditions associated with climate change will shift the balance between ecosystem photosynthesis and respiration providing a positive feedback to atmospheric CO₂ concentration. Our main objective was to determine the sensitivity of ecosystem photosynthesis, respiration and net ecosystem production (NEP) measured by eddy covariance, to variation in temperature and water table depth associated with interannual shifts in weather during 2004–2009. Our study was conducted in a moderately rich treed fen, the most abundant peatland type in western Canada, in a region (northern Alberta) where peatland ecosystems are a significant landscape component. During the study, the average growing season (May–October) water depth declined approximately 38 cm, and temperature [expressed as cumulative growing degree days (GDD, March–October)] varied approximately 370 GDD. Contrary to previous predictions, both ecosystem photosynthesis and respiration showed similar increases in response to warmer and drier conditions. The ecosystem remained a strong net sink for CO₂ with an average NEP (± SD) of 189 ± 47 g C m^?2 yr^?1. The current net CO₂ uptake rates were much higher than C accumulation in peat determined from analyses of the relationship between peat age and cumulative C stock. The balance between C addition to, and total loss from, the top 0–30 cm depth (peat age range 0–70 years) of shallow peat cores averaged 43 ± 12 g C m^?2 yr^?1. The apparent long‐term average rate of net C accumulation in basal peat samples was 19–24 g C m^?2 yr^?1. The difference between current rates of net C uptake and historical rates of peat accumulation is likely a result of vegetation succession and recent increases in tree establishment and productivity.     

Microbial methane cycling in the bed of a chalk river: oxidation has the potential to match methanogenesis enhanced by warming

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CO2 emissions from an undrained tropical peatland: Interacting influences of temperature,shading and water table depth

Emission of CO₂ from tropical peatlands is an important component of the global carbon budget. Over days to months, these fluxes are largely controlled by water table depth. However, the diurnal cycle is less well understood, in part, because most measurements have been collected daily at midday. We used an automated chamber system to make hourly measurements of peat surface CO₂ emissions from chambers root‐cut to 30 cm. We then used these data to disentangle the relationship between temperature, water table and heterotrophic respiration (R_het). We made two central observations. First, we found strong diurnal cycles in CO₂ flux and near‐surface peat temperature (<10 cm depth), both peaking at midday. The magnitude of diurnal oscillations was strongly influenced by shading and water table depth, highlighting the limitations of relying on daytime measurements and/or a single correction factor to remove daytime bias in flux measurements. Second, we found mean daily R_het had a strong linear relationship to the depth of the water table, and under flooded conditions, R_het was small and constant. We used this relationship between R_het and water table depth to estimate carbon export from both R_het and dissolved organic carbon over the course of a year based on water table records. R_het dominates annual carbon export, demonstrating the potential for peatland drainage to increase regional CO₂ emissions. Finally, we discuss an apparent incompatibility between hourly and daily average observations of CO₂ flux, water table and temperature: water table and daily average flux data suggest that CO₂ is produced across the entire unsaturated peat profile, whereas temperature and hourly flux data appear to suggest that CO₂ fluxes are controlled by very near surface peat. We explore how temperature‐, moisture‐ and gas transport‐related mechanisms could cause mean CO₂ emissions to increase linearly with water table depth and also have a large diurnal cycle.     

Warmer and drier conditions stimulate respiration more than photosynthesis in a boreal peatland ecosystem: Analysis of automatic chambers and eddy covariance measurements

Continuous half‐hourly net CO₂ exchange measurements were made using nine automatic chambers in a treed fen in northern Alberta, Canada from June–October in 2005 and from May–October in 2006. The 2006 growing season was warmer and drier than in 2005. The average chamber respiration rates normalized to 10 °C were much higher in 2006 than in 2005, while calculations of the temperature sensitivity (Q₁₀) values were similar in the two years. Daytime average respiration values were lower than the corresponding, temperature‐corrected respiration rates calculated from night‐time chamber measurements. From June to September, the season‐integrated estimates of chamber photosynthesis and respiration were 384 and 590 g C m^?2, respectively in 2006, an increase of 100 and 203 g C m^?2 over the corresponding values in 2005. The season‐integrated photosynthesis and respiration rates obtained using the eddy covariance technique, which included trees and a tall shrub not present in the chambers, were 720 and 513 g C m^?2, respectively, in 2006, an increase of 50 and 125 g C m^?2 over the corresponding values in 2005. While both photosynthesis and respiration rates were higher in the warmer and drier conditions of 2006, the increase in respiration was more than twice the increase in photosynthesis.     

Partitioning net ecosystem carbon exchange and the carbon isotopic disequilibrium in a subalpine forest

We investigate the utility of an improved isotopic method to partition the net ecosystem exchange of CO₂ (F) into net photosynthesis (F_A) and nonfoliar respiration (F_R). Measurements of F and the carbon isotopic content in air at a high‐elevation coniferous forest (the Niwot Ridge AmeriFlux site) were used to partition F into F_A and F_R. Isotopically partitioned fluxes were then compared with an independent flux partitioning method that estimated gross photosynthesis (GEE) and total ecosystem respiration (TER) based on statistical regressions of night‐time F and air temperature. We compared the estimates of F_A and F_R with expected canopy physiological relationships with light (photosynthetically active radiation) and air temperature. Estimates of F_A and GEE were dependent on light as expected, and TER, but not F_R, exhibited the expected dependence on temperature. Estimates of the isotopic disequilibrium D , or the difference between the isotopic signatures of net photosynthesis (δ_A, mean value ?24.6‰) and ecosystem respiration (δ_R, mean value ?25.1‰) were generally positive (δ_A>δ_R). The sign of D observed here is inconsistent with many other studies. The key parameters of the improved isotopic flux partitioning method presented here are ecosystem scale mesophyll conductance (g_m) and maximal vegetative stomatal conductance (g_cmax). The sensitivity analyses of F_A, F_R, and D to g_cmax indicated a critical value of g_cmax (0.15 mol m^?2 s^?1) above which estimates of F_A and F_R became larger in magnitude relative to GEE and TER. The value of D decreased with increasing values of g_m and g_cmax, but was still positive across all values of g_m and g_cmax. We conclude that the characterization of canopy‐scale mesophyll and stomatal conductances are important for further progress with the isotope partitioning method, and to confirm our anomalous isotopic disequilibrium findings.