Effect of circadian on the activities of ion transport ATPases and histological structure of kidneys in mice

The impacts of unnatural every day cycles (circadian) for 60 days on the histological structure of kidneys and ATPase activities in MF1 mice were studied. The exposure times were 16 h dark, 16 h light, 24 h dark, and 24 h light, and control exposure times were 12 h dark followed by 12 h light. Our results showed an increase in the total ATPase activity of mice in all groups. Additionally, the activity of the enzyme Na⁺/K⁺-ATPase was increased after 24 h darkness, 24 h light, and 16 h light exposures compared to control. The enzyme Mg⁺²-ATPase activities of the groups were higher when exposed to 16 h light, 24 h light, 24 h darkness and 16 h darkness. The activities of total ATPase, Na⁺/K⁺-ATPase and Mg⁺²-ATPase in kidneys were increased in all groups after 24 h light, 24 h darkness, 16 h darkness and 16 h light exposures. Interestingly, the activity of V-type ATPase was reduced after 16 h darkness, 24 h darkness and 16 h light. Taking everything into account, changes in the day by day cycle prompt neurotic changes, enzymatic and histological changes in the kidneys of mice. More studies should be directed to explore the impacts of light and darkness that can prompt these progressions.     

Insights into the ubiquinol/dioxygen binding and proton relay pathways of the alternative oxidase

The alternative oxidase (AOX) is a monotopic diiron carboxylate protein which catalyzes the four-electron reduction of dioxygen to water by ubiquinol. Although we have recently determined the crystal structure of Trypanosoma brucei AOX (TAO) in the presence and absence of ascofuranone (AF) derivatives (which are potent mixed type inhibitors) the mechanism by which ubiquinol and dioxygen binds to TAO remain inconclusive. In this article, ferulenol was identified as the first competitive inhibitor of AOX which has been used to probe the binding of ubiquinol. Surface plasmon resonance reveals that AF is a quasi-irreversible inhibitor of TAO whilst ferulenol binding is completely reversible. The structure of the TAO-ferulenol complex, determined at 2.7?Å, provided insights into ubiquinol binding and has also identified a potential dioxygen molecule bound in a side-on conformation to the diiron center for the first time.     

Molecular dynamics simulation of water in cytochrome c oxidase reveals two water exit pathways and the mechanism of transport

We have examined the network of connected internal cavities in cytochrome c oxidase along which water produced at the catalytic center is removed from the enzyme. Using combination of structural analysis, molecular dynamics simulations, and free energy calculations we have identified two exit pathways that connect the Mg²⁺ ion cavity to the outside of the enzyme. Each pathway has a well-defined bottleneck, which determines the overall rate of water traffic along the exit pathway, and a specific cooperative mechanism of passing it. One of the pathways is going via Arg438/439 (in bovine numbering) toward the Cu_A center, approaching closely its His204_B ligand and Lys171_B residue; and the other is going toward Asp364 and Thr294. Comparison of the pathways among different aa₃-type enzymes shows that they are well conserved. Possible connections of the finding to redox-coupled proton pumping mechanism are discussed. We propose specific mutations near the bottlenecks of the exit pathways that can test some of our hypotheses.     

Availability of water and inorganic nutrients in the persistent leaf bases of the grasstree Kingia australis, and uptake and translocation of labelled phosphate by the embedded aerial roots

Numerous lateral branches of the concealed aerial roots of the grasstree Kingia australis ramify through the persistent leaf bases, suggesting a role in uptake of water and nutrients localed up to 8 m above ground. These leaf bases were shown to hold up to more than three times their weight in water. Water and nutrients (N, P and K) available in the leaf bases may greatly exceed that in an equal volume of surface soil, especially during the dry summer months. At this time, ³²P injected# among the leaf bases is strongly absorbed by the aerial roots and translocated to the meristematic regions of other laterals beneath the point of application, but mostly to the stern and leaves above it. Scattered vascular bundles in the pith are the major routes for the rapid distribution of "P up and down the trunk following its departure from the aerial roots. Water and nutrients stored in the leaf bases and their subsequent uptake by the associated aerial roots may therefore contribute significantly to this species' tolerance of long summer droughts and extremely impoverished soils.     

Evaluation of the water environments in deoxygenated sickle cells by longitudinal and transverse water proton relaxation rates

The longitudinal and transverse water proton relaxation rates of oxygenated and deoxygenated erythrocytes from both normal adults and individuals with sickle cell disease were measured as a function of temperature at two different frequencies. The simplest model which fits all of the data consists of three different environments for water molecules. The majority of the water (98%) has a correlation time indistinguishable from bulk water (3 × 10^?11 sec). Secondly, there is a small amount of water (1.3–1.5%) present which has a correlation time of 2–4 × 10 ^?9 sec and is apparently independent of the erythrocyte sample studied. Presumably this water is the hydration sphere around the hemoglobin molecules and its correlation time is significantly slower than bulk water. The third environment contains approximately 0.2% of the water present and has a correlation time≥ 10^?7 sec. This third environment is considered tightly bound to the hemoglobin because the water proton correlation time is very similar to the expected rotational correlation time for the hemoglobin molecules. The value of the transverse relaxation rate, f_b(T_2b)^?1, for the tightly bound water fraction decreases in oxy ($\text{S}\text{S}$), deoxy ($\text{A}\text{A}$), and oxy ($\text{A}\text{A}$) erythrocyte samples as the temperature is increased as expected for a rotational correlation time process. In dramatic contrast,f_b (T_2b)^?1 increases almost linearly as the temperature is increased over the whole 4 ° to 37 °C temperature range in samples of deoxy ($\text{S}\text{S}$) erythrocytes. The observation suggests a continual increase in the formation of deoxyhemoglobulin S polymers rather than a sudden transition from a homogeneous solution of deoxyhemoglobin S molecules to a solid gel.     

H+ transport and coupling by the F0 sector of the ATP synthase: Insights into the molecular mechanism of function

The F₀ sector of the ATP synthase complex facilitates proton translocation through the membrane, and via interaction with the F₁ sector, couples proton transport to ATP synthesis. The molecular mechanism of function is being probed by a combination of mutant analysis and structural biochemistry, and recent progress on theEscherichia coli F₀ sector is reviewed here. TheE. coli F₀ is composed of three types of subunits (a, b, andc) and current information on their folding and organization in F₀ is reviewed. The structure of purified subunitc in chloroform-methanol-H₂O resembles that in native F₀, and progress in determining the structure by NMR methods is reviewed. Genetic experiments suggest that the two helices of subunitc must interact as a functional unit around an essential carboxyl group as protons are transported. In addition, a unique class of suppressor mutations identify a transmembrane helix of subunita that is proposed to interact with the bihelical unit of subunitc during proton transport. The role of multiple units of subunitc in coupling proton translocation to ATP synthesis is considered. The special roles of Asp61 of subunitc and Arg210 of subunita in proton translocation are also discussed.     

Breakpoint mapping of a novel de novo translocation t(X;20)(q11.1;p13) by positional cloning and long read sequencing

Disease associated chromosomal rearrangements often have break points located within disease causing genes or in their vicinity. The purpose of this study is to characterize a balanced reciprocal translocation in a girl with intellectual disability and seizures by positional cloning and whole genome sequencing. The translocation was identification by G- banding and confirmed by WCP FISH. Fine mapping using BAC clones and whole genome sequencing using Oxford nanopore long read sequencing technology for a 1.46 X coverage of the genome was done. The positional cloning showed split signals with BAC RP11-943 J20. Long read sequencing analysis of chimeric reads carrying parts of chromosomes X and 20 helped to identify the breakpoints to be in intron 2 of ARHGEF9 gene on Xp11.1 and on 20p13 between RASSF2 and SLC23A2 genes. This is the first report of translocation which successfully delineated to single base resolution using Nanopore sequencing. The genotype-phenotype correlation is discussed.