Deconstructing the dimensions of alpha diversity in squamate reptiles (Reptilia: Squamata) across the Americas

Aim

Our aim is to document the dimensions of current squamate reptile biodiversity in the Americas by integrating taxonomic, phylogenetic and functional data, and assessing how this may vary across phylogenetic scales. We also explore the potential underlying mechanisms that may be responsible for the observed geographical diversity patterns.

Location

The Americas.

Time period

Present.

Major taxa

Squamate reptiles.

Methods

We used published data on the distribution, phylogeny, and body size of squamate reptiles to document the current dimensions of their alpha diversity in the Americas. We overlapped species ranges to estimate taxonomic diversity (TD) and calculated phylogenetic diversity (PD) using mean pairwise phylogenetic distance (MPD), speciation rate (DivRate) and Faith's phylogenetic index (PD). We estimated functional diversity (FD) as trait dispersion in the multivariate space using body size and leg development data. We implemented a deconstructive macroecological approach to understand how spatial mismatches between the three facets of diversity vary across phylogenetic scales, and the potential eco-evolutionary mechanisms driving these patterns across space.

Results

We found a strong latitudinal gradient of TD with a large accumulation in tropical regions. PD and FD patterns were largely similar likely due to the high phylogenetic signal in the traits used, and higher values tended to be concentrated in harsh and/or heterogeneous environments. We found differences between major clades within Squamata that display contrasting geographical patterns. Several regions across the continent shared the same spatial mismatches between dimensions across clades, suggesting that similar eco-evolutionary processes are shaping these regional reptile assemblages. However, we also found evidence that non-mutually exclusive processes can operate differently across clades.

Main conclusions

The deconstructive approach implemented here is based on a solid macroecological framework. We can extend this to other taxonomic groups to establish whether there are particularities about how different eco-evolutionary mechanisms shape biodiversity facets in a spatially explicit context.     

吉林灌木群落物种多样性与气候和局域环境因子的关系

为了研究气候和局域环境因子对物种多样性的相对作用大小,以及验证两种均匀度地理格局的假说在半湿润地区次生灌丛的适用性,对吉林东、南部地区的灌木群落进行了研究。共调查森林破坏后形成的次生灌丛样方45个,结合气候数据和局域环境因子数据,研究了气候、局域环境因子对群落、灌木层、草本层的物种丰富度、均匀度的影响,以及对不同水分生态型(旱生、旱中生、湿中生)灌木影响的差异。结果表明:1)吉林次生灌丛的群落、草本层物种丰富度,以及草本层均匀度,随纬度增加而显著上升。2)对物种多样性和气候、局域环境因子的分析表明,群落、草本层物种数主要受局域环境因子而不是气候的影响;其物种丰富度与纬度的反常关系,是由于灌木层盖度随降水增加而上升,从而导致物种数下降。灌木层物种数与纬度、气候因子的相关性不显著,则是由于不同水分生态型对气候梯度的响应不一致,反映出功能群对多样性格局的影响。3)群落、灌木层均匀度主要受气候因子的影响;而草本层均匀度主要受局域环境因子的影响,降水同样通过对灌木层盖度的影响间接作用于草本均匀度。但群落、灌木和草本层的结果,都支持均匀度随着环境条件改善而增加的假说,而不支持随着生产力增加、竞争加剧,从而导致均匀度下降的假说。结果表明,物种丰富度和均匀度的影响机制存在很大差异,但二者都受到局域环境因子的强烈影响。气候通过局域生物因素(如盖度、生活型)间接作用于多样性格局,是气候对多样性影响的一个重要方面,但尚未得到应有的重视。由于局域生物因素也随气候而变化,仅研究多样性和气候的表面关系,将无法准确预测气候变化对多样性的影响。     

物种多样性和功能群多样性与生态系统生产力的关系——以内蒙古短花针茅草原为例

生物多样性与生态系统生产力之间的关系是当前生态学领域的热点问题。短花针茅(Stipa breviflora)草原是内蒙古荒漠草原的主要类型, 生态系统脆弱, 气候波动剧烈, 研究内蒙古短花针茅草原生物多样性与生产力的关系具有十分重要的意义。该研究在内蒙古短花针茅草原区设置了202个样地进行群落调查, 在干旱区及半干旱区两种资源供给下, 分析了物种丰富度、功能群丰富度与生产力的关系, 旨在解决两个科学问题: 1)物种多样性和功能群多样性中, 哪一种与生产力关系更为密切?2)资源供给对多样性和生产力关系的影响。结果表明: 1)物种丰富度、群落生产力与年降水量呈正相关关系, 而功能群丰富度与年降水量之间不存在显著相关性; 2)群落生产力随物种丰富度的增加而增加, 且两者间呈正线性关系, 功能群丰富度与生产力之间不存在显著相关关系; 3)资源供给会影响多样性与生产力之间的关系, 资源供给低时, 多样性对生产力贡献较低, 资源供给高时, 多样性对生产力的贡献较高。该研究丰富了多样性与生产力关系的研究, 同时, 考虑到植物功能性状的研究在近几年受到生态学家的重视, 且多数研究集中于小尺度的人工控制实验, 因此, 在大尺度自然生态系统中开展功能性状多样性与生态系统功能关系的研究将十分必要。     

Genetic diversity across the range of a temperate lizard

Aim  To examine range-wide patterns of genetic diversity in association with range limits in a broadly distributed temperate lizard, and to identify the contributions of a series of environmental, geographical and historical variables to the observed patterns. Reduced genetic diversity may limit local adaptation in peripheral populations, thereby limiting their ability to adapt to marginal environmental conditions, possibly explaining the existence of temporally stable range limits.
Location  Various sampling locales throughout eastern and central USA and southern Ontario, Canada.
Methods  Genetic diversity of nuclear DNA microsatellites was estimated for each of 38 populations from across the range of eastern North America's most broadly distributed lizard, the five-lined skink, Plestiodon fasciatus (Linnaeus, 1758).
Results  Local climatic conditions and an interaction between distance from range border and glaciation history best predicted a population's present-day genetic diversity. Overall, peripheral populations had reduced genetic diversity relative to that of central populations, but this difference was attributable to the reduced genetic diversity in peripheral populations to the north and west that are not bordered by any obvious physical boundaries.
Main conclusions  Some, but not all, peripheral populations had reduced genetic diversity relative to that of more central populations, which probably arose through an interaction of ecological and historical factors. Peripheral populations that were bordered by an obvious boundary (e.g. an ocean) had higher diversity than peripheral populations that were not bordered by an obvious physical barrier to range expansion, suggesting that reduced intrapopulation genetic diversity is associated with range limits in the five-lined skink.     

Strong paleoclimatic legacies in current plant functional diversity patterns across Europe

Numerous studies indicate that environmental changes during the late Quaternary have elicited long‐term disequilibria between species diversity and environment. Despite its importance for ecosystem functioning, the importance of historical environmental conditions as determinants of FD (functional diversity) remains largely unstudied. We quantified the geographic distributions of plant FD (richness and dispersion) across Europe using distribution and functional trait information for 2702 plant species. We then compared the importance of historical and contemporary factors to determine the relevance of past conditions as predictors of current plant FD in Europe. For this, we compared the strength of the relationships between FD with temperature and precipitation stability since the LGM (Last Glacial Maximum), accessibility to LGM refugia, and contemporary environmental conditions (climate, productivity, soil, topography, and land use). Functional richness and dispersion exhibited geographic patterns with strong associations to the environmental history of the region. The effect size of accessibility to LGM refugia and climate stability since the LGM was comparable to that of the contemporary predictors. Both functional richness and dispersion increased with temperature stability since the LGM and accessibility to LGM refugia. Functional richness' geographic pattern was primarily associated with accessibility to LGM refugia growing degree‐days, land use heterogeneity, diversity of soil types, and absolute minimum winter temperature. Functional dispersion's geographic pattern was primarily associated with accessibility to LGM refugia growing degree‐days and absolute minimum winter temperature. The high explained variance and model support of historical predictors are consistent with the idea that long‐term variability in environmental conditions supplements contemporary factors in shaping FD patterns at continental scales. Given the importance of FD for ecosystem functioning, future climate change may elicit not just short‐term shifts in ecosystem functioning, but also long‐term functional disequilibria.     

水盐变化对荒漠植物功能多样性与物种多样性关系的影响

研究植物功能多样性与物种多样性关系对土壤水盐环境的响应规律,有助于掌握胁迫环境下植物多样性的维持机理.本研究分析了艾比湖高、低土壤水盐环境下荒漠植物功能多样性、物种多样性差异及二者间关系在不同水盐环境下的变化规律.结果表明:(1)高水盐环境下植物功能离散度显著低于低水盐环境(P<0.05),物种多样性指数Fish-α显著高于低水盐环境;(2)一元与多元回归分析均表明,高水盐环境下物种多样性对功能多样性RaoQ与FRic指数有显著促进作用,低水盐环境下物种多样性对功能多样性和均匀度有显著促进作用,但对功能离散度具有显著抑制作用(P<0.05);(3)物种多样性对功能多样性的影响在低水盐环境下更显著,预测力更强;(4)功能丰富度、离散度与均匀度能较敏感地反映出荒漠植物功能多样性对水盐变化的响应.本研究有助于理解荒漠植物群落构建机制,并为荒漠植物恢复与管理提供理论参考.     

植物群落功能多样性计算方法

以性状为基础的功能多样性指数在预测生态系统功能中起到越来越重要的作用.本文对近年来陆续出现的植物群落功能多样性指数进行综述.依据物种多样性指数的组成,功能多样性指数分为功能丰富度、功能均匀度和功能离散度指数.介绍了这3类指数的计算方法,有助于更好、更准确地理解“生物多样性-环境-生态系统功能”的关系.     

Human land use promotes the abundance and diversity of exotic species on Caribbean islands

Human land use causes major changes in species abundance and composition, yet native and exotic species can exhibit different responses to land use change. Native populations generally decline in human‐impacted habitats while exotic species often benefit. In this study, we assessed the effects of human land use on exotic and native reptile diversity, including functional diversity, which relates to the range of habitat use strategies in biotic communities. We surveyed 114 reptile communities from localities that varied in habitat structure and human impact level on two Caribbean islands, and calculated species richness, overall abundance, and evenness for every plot. Functional diversity indices were calculated using published trait data, which enabled us to detect signs of trait filtering associated with impacted habitats. Our results show that environmental variation among sampling plots was explained by two Principal Component Analysis (PCA) ordination axes related to habitat structure (i.e., forest or nonforest) and human impact level (i.e., addition of man‐made constructions such as roads and buildings). Several diversity indices were significantly correlated with the two PCA axes, but exotic and native species showed opposing responses. Native species reached the highest abundance in forests, while exotic species were absent in this habitat. Human impact was associated with an increase in exotic abundance and species richness, while native species showed no significant associations. Functional diversity was highest in nonforested environments on both islands, and further increased on St. Martin with the establishment of functionally unique exotic species in nonforested habitat. Habitat structure, rather than human impact, proved to be an important agent for environmental filtering of traits, causing divergent functional trait values across forested and nonforested environments. Our results illustrate the importance of considering various elements of land use when studying its impact on species diversity and the establishment and spread of exotic species.     

Climate change threats to the global functional diversity of freshwater fish

Climate change impacts on freshwater ecosystems and freshwater biodiversity show strong spatial variability, highlighting the importance of a global perspective. While previous studies on biodiversity mostly focused on species richness, functional diversity, which is a better predictor of ecosystem functioning, has received much less attention. This study aims to comprehensively assess climate change threats to the functional diversity of freshwater fish across the world, considering three complementary metrics—functional richness, evenness and divergence. We built on existing spatially explicit projections of geographical ranges for 11,425 riverine fish species as affected by changes in streamflow and water temperature extremes at four warming levels (1.5°C, 2.0°C, 3.2°C and 4.5°C). To estimate functional diversity, we considered the following four continuous, morphological and physiological traits: relative head length, relative body depth, trophic level and relative growth rate. Together, these traits cover five ecological functions. We treated missing trait values in two different ways: we either removed species with missing trait values or imputed them. Depending on the warming level, 6%–25% of the locations globally face a complete loss of functional diversity when assuming no dispersal (6%–17% when assuming maximal dispersal), with hotspots in the Amazon and Paraná River basins. The three facets of functional diversity do not always follow the same pattern. Sometimes, functional richness is not yet affected despite species loss, while functional evenness and divergence are already reducing. Other times, functional richness reduces, while functional evenness and/or divergence increase instead. The contrasting patterns of the three facets of functional diversity show their complementarity among each other and their added value compared to species richness. With increasing climate change, impacts on freshwater communities accelerate, making early mitigation critically important.     

Functional diversity in nematode communities across terrestrial ecosystems

Functional diversity can be defined as the distribution of trait values within a community. Hence, functional diversity can be an indicator of habitat filtering and a reliable environmental predictor of ecosystem functioning. However, there is a serious lack of studies that test how functional diversity indices change depending on the environmental conditions. The aim of this study is to provide such evidence by analyzing the distribution and variation of continuous body-mass values (i.e. functional diversity) and related shifts in body length and width in a nematode community.We used a large online dataset on nematode traits to analyze: (i) the distribution of body mass using three functional diversity indices, i.e. functional richness, functional divergence and functional evenness; (ii) the shifts in body-size traits (length and width); and (iii) the body-mass distributions of five trophic groups and of the entire nematode community.Managed grasslands exhibited the widest range of body-mass values while body-mass distribution in arable fields covered the greatest area in comparison to the other ecosystem types. The shift in body size revealed environmental filters that could not have been identified by the study of functional diversity indices per se. We found low values of functional evenness to be associated with high values of functional richness. We provide novel empirical evidence that body-mass distribution within a trophic group mirrors the effects of habitat filtering more than the distribution in the community as a whole. Hence, our trait-based approach, more than functional diversity itself, disclosed soil food-web structure and identified community responses.     

Patterns of functional diversity across an extensive environmental gradient: vertebrate consumers, hidden treatments and latitudinal trends

Over the last two decades, although much has been learned regarding the multifaceted nature of biodiversity, relatively little is known regarding spatial variation in constituents other than species richness. This is particularly true along extensive environmental gradients such as latitude. Herein, we describe latitudinal gradients in the functional diversity of New World bat communities. Bat species from each of 32 communities were assigned to one of seven functional groups. Latitudinal gradients existed for the richness, diversity and scaled‐dominance of functional groups. No significant patterns were observed for evenness of functional groups. Measures of functional diversity were different in magnitude and increased towards the equator at a faster rate than expected given the underlying spatial variation in species richness. Thus, latitudinal gradient in species richness alone do not cause the latitudinal gradient in functional diversity. When variation in species composition of the regional fauna of each community was incorporated into analyses, many differences between observed and simulated patterns of functional diversity were not significant. This suggests that those processes that determine the composition of regional faunas strongly influence the latitudinal gradient in functional diversity at the local level. Nonetheless, functional diversity was lower than expected across observed sites. Community‐wide responses to variation in the quantity and quality of resources at the local level probably contribute to differences in functional diversity at local and regional scales and enhance beta diversity.     

坡向因子对黄土高原草地群落功能多样性的影响

研究群落水平上的植物功能性状特征及功能多样性随坡向的变化规律,对认识不同坡向上的植物群落形成过程具有重要意义。以黄土高原不同坡向上的自然草地群落为研究对象,比较研究了植物功能性状(株高和比叶面积)和功能多样性测度指标(功能丰富度、功能均匀度和功能离散度)随坡向的变化规律。研究结果显示:(1)阴坡的株高和比叶面积显著高于其他坡向;(2)一元性状的功能丰富度在不同坡向间均无显著差异;阴坡和半阴坡的多元性状功能丰富度显著高于阳坡;(3)阴坡的株高功能均匀度显著高于半阳坡,而比叶面积功能均匀度在各坡向的差异并不显著;多元性状功能均匀度在不同坡向差异显著,阴坡最高,半阳坡最低;(4)阴坡和半阴坡的株高功能离散度显著高于阳坡和半阳坡,而半阴坡的比叶面积功能离散度显著高于阳坡;半阴坡的多元性状功能离散度Rao指数显著高于阳坡。研究结果暗示了,在阴坡和半阴坡上,植物对群落内的生态位空间和资源利用更充分,种间竞争强度较低,不同物种之间生态位高度分化;而在阳坡和半阳坡上,由于水分等条件的限制植物可占据的生态位空间有限,导致其对占据的生态位空间使用不足,物种间资源竞争较强烈。在群落水平上,研究地区的植物功能性状及功能多样性随坡向的规律性变化,反映了黄土高原植被群落构建过程中坡向因子对功能性状的筛选效应。该研究结果对该区的植被恢复重建的物种选择及植被布局规划具有重要实践意义。     

Higher biodiversity is required to sustain multiple ecosystem processes across temperature regimes

Biodiversity loss is occurring rapidly worldwide, yet it is uncertain whether few or many species are required to sustain ecosystem functioning in the face of environmental change. The importance of biodiversity might be enhanced when multiple ecosystem processes (termed multifunctionality) and environmental contexts are considered, yet no studies have quantified this explicitly to date. We measured five key processes and their combined multifunctionality at three temperatures (5, 10 and 15 °C) in freshwater aquaria containing different animal assemblages (1–4 benthic macroinvertebrate species). For single processes, biodiversity effects were weak and were best predicted by additive‐based models, i.e. polyculture performances represented the sum of their monoculture parts. There were, however, significant effects of biodiversity on multifunctionality at the low and the high (but not the intermediate) temperature. Variation in the contribution of species to processes across temperatures meant that greater biodiversity was required to sustain multifunctionality across different temperatures than was the case for single processes. This suggests that previous studies might have underestimated the importance of biodiversity in sustaining ecosystem functioning in a changing environment.     

Using niche-based modelling to assess the impact of climate change on tree functional diversity in Europe

Rapid anthropogenic climate change is already affecting species distributions and ecosystem functioning worldwide. We applied niche-based models to analyse the impact of climate change on tree species and functional diversity in Europe. Present-day climate was used to predict the distributions of 122 tree species from different functional types (FT). We then explored projections of future distributions under one climate scenario for 2080, considering two alternative dispersal assumptions: no dispersal and unlimited dispersal. The species-rich broadleaved deciduous group appeared to play a key role in the future of different European regions. Temperate areas were projected to lose both species richness and functional diversity due to the loss of broadleaved deciduous trees. These were projected to migrate to boreal forests, thereby increasing their species richness and functional diversity. Atlantic areas provided an intermediate case, with a predicted reduction in the numbers of species and occasional predicted gains in functional diversity. This resulted from a loss in species within the broadleaved deciduous FT, but overall maintenance of the group. Our results illustrate the fact that both species-specific predictions and functional patterns should be examined separately in order to assess the impacts of climate change on biodiversity and gain insights into future ecosystem functioning.     

Benthic habitats do show a significant latitudinal diversity gradient: A comment on Kinlock et al. (2018)

The latitudinal diversity gradient (LDG) has been investigated for decades, with hundreds of studies focusing on different organisms, regions and habitat types. Meta‐analysis may be considered, therefore, a useful tool to explore the generality and limitations of this remarkable macroecological pattern. The first meta‐analysis exploring variations in the LDG, published by Hillebrand in 2004, revealed that the latitudinal decline in species richness seems to be indeed a general phenomenon. However, Kinlock et al. (2018, Global Ecology and Biogeography, 27, 125–141) revisited recently the challenge of synthesizing individual LDGs and indicated that the phenomenon is not ubiquitous among habitats of the marine realm. More precisely, they indicated that the phenomenon is non‐significant in the benthic habitat. Here, we suggest that the marine habitat categories used by them (i.e., benthic, coral reefs, coastal, open ocean) are not independent and that reclassifying the studies significantly alters one of their main results. By assigning the studies into benthic and pelagic categories, and additionally into coastal or oceanic zones, we show that non‐ambiguous, evolutionarily meaningful marine habitats display a significant latitudinal decline in species richness.     

The multidimensionality of the niche reveals functional diversity changes in benthic marine biotas across geological time

Despite growing attention on the influence of functional diversity changes on ecosystem functioning, a palaeoecological perspective on the long-term dynamic of functional diversity, including mass extinction crises, is still lacking. Here, using a novel multidimensional functional framework and comprehensive null-models, we compare the functional structure of Cambrian, Silurian and modern benthic marine biotas. We demonstrate that, after controlling for increases in taxonomic diversity, functional richness increased incrementally between each time interval with benthic taxa filling progressively more functional space, combined with a significant functional dissimilarity between periods. The modern benthic biota functionally overlaps with fossil biotas but some modern taxa, especially large predators, have new trait combinations that may allow more functions to be performed. From a methodological perspective, these results illustrate the benefits of using multidimensional instead of lower dimensional functional frameworks when studying changes in functional diversity over space and time.