The int genes of bacteriophages P22 and λ are regulated by different mechanisms

Bacteriophage P22 and λ are related bacteriophages with similar gene organizations. In λ the cII-dependent P_I promoter is responsible for λint gene expression. The only apparent counterpart to P_I in P22 is oriented in the opposite direction, and cannot transcribe the P22 int gene. We show that this promoter, called P_al, is active both in vivo and in vitro, and is dependent upon the P22 cII-like gene, called c1. We have also determined the DNA sequence of a 3.3 kb segment that closes the gap between previously reported sequences to give a continuous sequence between the P22 p_L promoter and the int gene. The newly determined sequence is densely packed with genes from the p_L direction, and the proteins predicted by the sequence show excellent correlation with the proteins mapped by Youderian and Susskind in 1980. However, the sequence contains no apparent genes in the opposite (p_al) direction, and no additional binding motifs for the P22 c1 protein. We conclude that int gene expression in P22 is regulated by a different mechanism than in λ.     

Replication-control functions block the induction of an SOS response by a damaged P1 bacteriophage

Summary UV-damaged bacteriophage P1 causes an SOS response in infected bacteria that can be measured colorimetrically with the aid of a p _L-lacZ fusion strain of Escherichia coli. This response is blocked by a P1 prophage. Evidence is offered that the blockage is caused by the concerted action of the incompatibility determinant incA and the immunity (c1 and c4) repressors of the prophage. We suggest that indirect induction of by damaged P1 is caused by the abortive initiation of replication in either of two modes, one under incA control, the other under c1 control and indirectly (via ant, the determinant of a repression antagonist) under c4 control.Abbreviations UV ultraviolet radiation     

Preparation,properties and crystal structures of nickel(II) complexes with acyclic schiff bases derived from 2,6-diformyl-4-chlorophenol and 1,5-diamino-3-thiapentane or 3,3′-diamino-N-methyl-dipropylamine

Nickel(II) complexes with the compartmental Schiff bases derived from 2,6-diformyl-4-chlorophenol and 1,5-diamino-3-thiapentane (H₂L¹) or 3,3′-diamino-N-methyl-dipropylamine (H₂L²) were synthesized, and the crystal structures of [Ni(L¹)- (py)₂] and [Ni(L²)(dmf)]·H₂0 were determined by X-ray crystallography.Ni(L¹)(py)₂ is monoclinic, space group C2/c, with a= 18.457(6), b = 11.116(7), c= 16.098(6) Å, and β = 115.79(5)°; D_c = 1.49 g cm⁻³ for Z = 4. The structure was refined to the final R of 6.9%. The molecule has C₂ symmetry. The nickel atom is six-coordinated octahedral. Selected bond lengths are: NiO 2.04(1) Å, NiN (L¹) 2.08(1) Å, NiN(py) 2.17(1) Å.[Ni(L²)(dmf)]·H₂O is monoclinic, space group P2₁/n, with a = 17.329(6), b = 13.322(7), c = 12.476(7) Å and β = 95.43(5)°; D_c = 1.45 g cm⁻³ for Z = 4. The structure was refined to the final R of 5.1%. The nickel atom is bonded in the octahedral geometry to the bianionic pentadentate ligand L² and to one molecule of dimethylformamide. Selected bond lengths are: NiO (charged) 2.063(3) Å (mean value), NiO (neutral) 2.120(3) Å, NiN (planar) 2.050(3) Å (mean value), NiN (tetrahedral) 2.177(3) Å.     

Repressor cleavage as a prophage induction mechanism: hypersensitivity of a mutant lambda cI protein to recA-mediated proteolysis

λcIind^s prophage is hypersensitive to derepression by ultraviolet-irradiation. We have utilized this mutant to test current models for prophage derepression. We find that cIind^s repressor is cleaved by RecA protein in vivo at lower ultraviolet doses and with more rapid kinetics than cI⁺ repressor, and that induction of the recA8 gene or other LexA-repressed genes is not required for cleavage. Our results support the concept that RecA-directed proteolysis is the primary mechanism for prophage derepression.     

Solution and solid state behavior of Co2+, Ni2+ and Zn2+ tosylaminoacidate systems: Crystal and molecular structure of bis(N-tosylglycinato)tetraaquocobalt(II) and bis(N-tosyl-β-alaninato)tetraaquozinc(II) complexes

The interactions between N-tosylamino acids and cobalt(II), nickel(II) and zinc(II) ions in aqueous solution and in the solid state have been investigated. From concentrated aqueous solutions, compounds of general formula [M(II)(N-tosylaminoacidato)₂(H₂O)₄](M = Co(II), Ni(II) and N-tosylaminoacidato = N-tosylglycinate (Tsgly^?), N-tosyl-α- and -β-alaninate (Ts-α- and Ts-β-ala^?); M = Zn(II) and N-tosylaminoacidate = Tsgly^?, Ts-β-ala^?) and [Zn(II)(N- tosylaminoacidato)₂(H₂O)₂] were isolated and characterized by means of thermogravimetric, electronic and infrared spectra. For two of them: [Co(Tsgly)₂(H₂O)₄](I) and [Zn(Ts-β-ala)₂(H₂O)₄](II) the crystal and molecular structures were also determined. Both compounds crystallize in the monoclinic space group P2₁/c, with two formula units in a cell of dimensions: a = 13.007(6), b = 5.036(2), c = 18.925(7) Å, β = 102.33(3)° for (I) and a = 14.173(6), b = 5.469(2), c = 17.701(7) Å, β = 106.63(3)° for (II). The structures were solved by the heavy-atom method and refined by least-squares calculations to R = 0.031 and 0.064 for (I) and (II) respectively. The cobalt and zinc atoms lie in the centers of symmetry, each bonded to two amino- acid molecules through a carboxylic oxygen atom and four water molecules in a slightly tetragonally distorted octahedral geometry. The second carboxylic oxygen atom is not involved in metal coordination. Electronic and X ray-powder spectra suggest that the tetrahydrate complexes of Co²⁺, Ni²⁺ and Zn²⁺ ions of the same amino acids are isomorphous and isostructural. No coordinative interactions between ligand and metal ions were found in aqueous solution on varying the pH values before hydroxide precipitation.     

Primary structure of the hip gene of Escherichia coli and of its product,the β subunit of integration host factor

We describe the isolation and sequencing of the hip gene of Escherichia coli and show that it encodes the β subunit of integration host factor (IHFβ). In order to locate the coding region, we constructed a set of deletion mutants by exonucleolytic digestion of a fragment containing hip, determined which mutants were hip⁺ and which hip^? by complementation, and then sequenced the ends of the critical deletions. The 5′ end of the coding region was located precisely by comparing the deduced amino acid sequence to the actual N-terminal amino acid sequence of IHF. Our assignment of the coding region was further substantiated by the nucleotide sequences of a hip point mutant and of internal replacement mutations. We found a probable promoter for hip located about 85 base-pairs upstream from the initial AUG codon and about 75 base-pairs downstream from the 3′ end of the neighboring gene. rpsA, and we constructed an IHFβ overproducer by fusing the coding sequences to the λp_L promoter. A survey of known protein sequences revealed a close relationship between IHFβ and the type II prokaryotic DNA binding proteins (the “histone-like” proteins). This relationship is shared to a considerable extent by the other subunit of IHF, IHFα. A hip missense mutation that replaces a completely conserved glycine with aspartate has a null phenotype, suggesting that the conserved regions are functionally important.     

Synthesis and characterization of 5,5,7,12,12,14-hexamethyl- 1,4,8,11-tetraazacyclotetradecane-N′,N‴-diacetic acid and its transition metal complexes; crystal structure of the nickel(II) monohydrogen bromide monohydrate complex of this macrocycle

The synthesis and characterization of a new 14- membered tetraazamacrocylic ligand 5,5,7,12,12,14- hexamethyl-1,4,8,11-tetraazacyclotetradecane-N′,N‴- diacetic acid (H₂L²) are reported. Cobalt(III),nickel(II) and copper(II) complexes with this ligand were prepared and their IR and visible spectra studied.The molecular structure of the complex NiL²· HBr·H₂O was proved by single-crystal X-ray analysis. The compound crystallizes in the space group P2₁/n, with cell parameters a = 16.7109(13), b = 9.0539(9), c = 17.0277(13) Å, β = 107.46(6)° and Z = 4. The structure was solved by direct and Fourier methods and refined by full matrix least square calculation to R = 0.042 for 4355 observed reflections (I > 3σ(I)). The complex shows a cis-octahedral geometry with the macrocycle coordinated in a folded configuration to four sites around the central nickel atom. The two carboxylate groups of the side chain are on the same side of the approximate plane of the macrocycle.     

Intramolecular hydrogen bonding: synthesis and crystal structure of nickel(II) and copper(II) complexes of a tetradentate amine oxime

In the reaction of the tetradentate ligand 3,3′-(1,4- butanediyldiamino) bis (3-methyl-2-butanone)-dioxime (BnAO) with nickel(II) and copper(II), the monomeric [Ni(BnAO-H)]I·H₂O and a mixed monomer/dimer salt [Cu(BnAO-H)H₂O]₂[(Cu(BnAO-H))₂](ClO₄)₄, respectively, are formed, and all complexes have an intramolecular hydrogen bond between cis oxime groups. The OHO bonds give the characteristic infrared absorptions as well as the downfield proton-NMR signal (Ni complex). [Ni(BnAO-H)]I·H₂O crystallizes in space group P2₁/a with a=13.511(2), b=10.599(2), c=14.096(2) Å, β=97.52°, Z=4 and D_c=1.623 g/cm³. The structure was solved by Patterson and Fourier methods and refined by full-matrix least-squares techniques to a final R of 0.021 for 2124 reflections with I 2σ(I). The nickel(II) atom in the complex has slightly distorted square planar geometry with an intramolecular O···O contact of 2.417(7) Å. The copper(II) complex crystallizes in space group P2₁/c with a =13.425(2), b=21.446(3), c=14.349(4) Å, β= 104.4(5)°, Z=8 (monomers) and D_c=1.485 g/cm³. The final R value for this complex was 0.053 for 3033 reflections with I 2σ(I). This structure contains a monomeric [Cu(BnAO-H)H₂O]⁺ ion and a dimeric [(Cu(BnAO-H))₂]²⁺ ion, having intramolecular O···O hydrogen bonds of 2.421(5) and 2.531(5) Å, respectively. The copper(II) ions have square-pyramidal coordination with the axial positions occupied by an oxygen of the water of hydration in the monomer and by an oxime oxygen atom in the dimer. A center of symmetry relates the two halves of the dimer. The copper atom in each case is out of the plane of the four nitrogen atoms toward the axial site. The copper(II) complex is unusual in that the crystal contains both a monomer and a dimer.     

Structure and electrochemistry of the bridging-ligand mono-substituted diruthenium compound, [Ru2(II,III)(O2CCH3)3(admpym)(Cl)(MeOH)] (Hadmpym=2-amino-4,6-dimethylpyrimidine)

The ligand substitution reaction of Ru₂(O₂CCH₃)₄Cl with 2-amino-4,6-dimethylpyrimidine (Hadmpym) under gentle refluxing conditions in methanol led to the formation of a bridging-ligand mono-substituted compound, [Ru₂(O₂CCH₃)₃(admpym)(Cl)(MeOH)] (1). Compound 1 crystallized in monoclinic space group P2₁/n (no. 14) with a=8.3074(8) Å, b=12.3722(8) Å, c=18.913(1) Å, β=95.559(3)°, V=1934.8(3) ų, and Z=4. Temperature dependence of the magnetic susceptibility of 1 revealed it to be in a spin ground state S=3/2 arising from the electronic configuration of σ²π⁴δ²(δ*π*)³. Compound 1 undergoes three metal-centered redox reactions in electrochemistry: E_1/2 ^(ox)=+0.72 V (I_a/I_c<1, ΔE_p=0.17 V); E_1/2 ^(1,red)=−0.65 V (I_a/I_c≈1, ΔE_p=0.10 V); and E_1/2 ^(2,red)=−1.80 V (I_a/I_c?1, ΔE_p=0.16 V). Then, the redox species produced by electrolysis were characterized by spectroscopic studies.     

Non-receptivity for kappa phage of kappa-lysogenic Serratia and reactions to superinfection of receptive cells with a mutant prophage

Summary l_I-lysogenic cells of Serratia marcescens as opposed to l_I ⁺-lysogenic cells, are receptive to further infection. After superinfection with wild type or several clear plaque mutants killing and lytic response were observed to a varying extent. From some of the surviving cells doubly lysogenic colonies with a l_I ⁺ and a l_I prophage could originate, l_I ⁺ being dominant and the cells therefore non-receptive. By this property, combined with a special color reaction, the colonies could be easily screened. Evidence is presented that the l_I ⁺ gene product probably does not interfere with the formation of new phage receptors but that under its influence receptors are masked.Two mutants resembling int^- mutants are described which only rarely give double lysogenization and prophage substitution following superinfection. The phage-coded function normally achieving these reactions is likely to work constitutively after superinfection. Transduction experiments performed with one of the two mutants pointed at integration of prophage into the host DNA near to the trp gene.Abbreviations moi multiplicity of infection - OD optical density - NG N-methyl-N-nitro-N-nitrosoguanidine - NB nutrient broth - BS buffered saline - EMB eosmemethylene blue - leu leucine - met methionine - pro proline - trp tryptophan