Similarities and gradients in growth unit branching patterns during ontogeny in "Fuji" apple trees: a stochastic approach

This study aims to explore and model the changes in growth unit (GU) branching patterns during tree ontogeny. The question was addressed in apple trees cv. "Fuji", by analysing the relative impact of GU length and within-tree position. The development of two 6-year-old trees was recorded over 6 years. The fate of axillary buds along each GU was represented as a sequence of symbols corresponding to five types of lateral growth: latent buds, short, medium, long, and floral lateral GUs. Based on an exploratory analysis of data and a priori hypotheses, a hidden semi-Markov chain was estimated from all of these GU sequences. This model was composed of six transient states representing successive branching zones along the GUs. The accuracy of this global model was a posteriori assessed by fitting the characteristic distributions computed from model parameters to the corresponding empirical characteristic distributions extracted from the observed sequences. The observed sequences were then grouped hierarchically according to the GU length, year of growth, and branching order. Comparing model parameters between these sub-groups revealed similarities between GUs. These similarities were based on particular branching zones whose composition and relative position within the GUs remained invariant across the subgroups: the latent zones, floral zone, and short-lateral zone. The probability of occurrence of the floral zone varied with the year, showing the alternate fruiting of "Fuji". It is shown that, during tree ontogeny, as GU length decreases, branching patterns tend to progressively simplify due to the disappearance of the most central zones and a progressive reduction in the length of the floral zone.     

Apple shoot architecture: evidence for strong variability of bud size and composition and hydraulics within a branching zone

* In the apple tree (Malus domestica), shoot architecture - the distribution of lateral bud types and growth along the parent shoot - has been extensively investigated. The distal zone of a shoot is characterized by a high proportion of vegetative or floral axillary branches mixed with latent buds and aborted laterals. The hypothesis tested here was that bud development was related to hydraulic conductance of the sap pathway to the bud, independently of an acrotonic (proximal vs distal) effect. * The distal zone of 1-yr-old shoots was studied on five cultivars for bud size and composition (number of appendages) and hydraulic conductance before bud burst. * Bud size, composition and hydraulic conductance were highly variable for all cultivars. A positive correlation was demonstrated between both the number of cataphylls and green-leaf primordia, and hydraulic conductance. Cultivar and bud size affected the intercept of these relationships more than the slope, suggesting similar scaling between these variables, but different hydraulic efficiencies. A great proportion of small buds were also characterized by null values of hydraulic conductance. * This study suggests that hydraulically mediated competition exists between adjacent buds within the same branching zone, prefiguring the variability of lateral types in the following growing season. It is hypothesized that this developmental patterning is driven by hydraulic characteristics of the whole metamer, including the subtending leaf, during bud development.     

THE DEVELOPMENTAL ANATOMY OF LONG-BRANCH TERMINAL BUDS OF PINUS BANKSIANA

A study of the composition of long-branch terminal buds (LBTB) of Pinus banksiana Lamb. and the yearly periodicity associated with their formation, development, and elongation was undertaken. Each LBTB has lateral bud zones and zones of cataphylls lacking axillary buds. When present, staminate cone primordia differentiate from the lowest lateral buds in the lowest lateral bud zone of the LBTB. Ovulate cone primordia and lateral long-branch buds can differentiate from the upper lateral buds in any lateral bud zone. When both types of buds are present, lateral long-branch buds are uppermost. Dwarf-branch buds occur in all lateral bud zones. During spring LBTB internodes elongate, new cataphylls are initiated, dwarf branches elongate, needles form and elongate, pollen forms and is released, and ovulate cones are pollinated. During summer buds form in the axils of the newly formed cataphylls. By early fall the new LBTB are in overwintering condition and the four types of lateral buds are discernable. The cytohistological zonation of the LBTB shoot apex is similar to that of more than 20 other conifer species. Cells in shoot apices of pine are usually arranged in distinct zones: apical initials, subapical initials, central meristem, and peripheral meristem. Periclinal divisions occur in the surface cells of the apex; therefore no tunica is present. At any given time, shoot apex volume and shape vary among LBTB in various positions on a tree. In any one LBTB on a tree, shoot apex shape changes from a low dome during spring to a high dome during summer to an intermediate shape through fall and winter.     

Winter bud content according to position in 3-year-old branching systems of 'Granny Smith' apple

An investigation was made of the number of preformed organs in winter buds of 3-year-old reiterated complexes of the 'Granny Smith' cultivar. Winter bud content was studied with respect to bud position: terminal buds were compared on both long shoots and spurs according to branching order and shoot age, while axillary buds were compared between three zones (distal, median and proximal) along 1-year-old annual shoots in order 1. The percentage of winter buds that differentiated into inflorescences was determined and the flowers in each bud were counted for each bud category. The other organ categories considered were scales and leaf primordia. The results confirmed that a certain number of organs must be initiated before floral differentiation occurred. The minimum limit was estimated at about 15 organs on average, including scales. Total number of lateral organs formed was shown to vary with both bud position and meristem age, increasing from newly formed meristems to 1- and 2-year-old meristems on different shoot types. These differences in bud organogenesis depending on bud position, were consistent with the morphogenetic gradients observed in apple tree architecture. Axillary buds did not contain more than 15 organs on average and this low organogenetic activity of the meristems was related to a low number of flowers per bud. In contrast, the other bud categories contained more than 15 differentiated organs on average and a trade-off was observed between leaf and flower primordia. The ratio between the number of leaf and flower primordia per bud varied with shoot type. When the terminal buds on long shoots and spurs were compared, those on long shoots showed more flowers and a higher ratio of leaf to flower primordia.     

Source-sink relationship in Abelmoschus esculentum L.

The ontogenetic changes in source-sink relation associated with the manipulation of reproductive sink at different positions on the plant in two okra cultivars (Arka Anamika and Pusa Makhamali) with distinct branching habit (cv. Arka Anamika tends to branch at the middle nodes unlike cv. Pusa Makhamali) were analysed. The cultivar differences for extension growth were nonsignificant except at treatment where all flowers and flower buds upto 8th mode were removed. The reproductive sink reductions resulted in a decrease of total dry matter accumulation per plant to an extent of 13 to 46% in Arka Anamika and 18 to 34 % in Pusa Makhamali. Fruits on the middle nodes appear to be prominent sinks for photo assimilates in cv. Arka Anamika. The reproductive sink manipulation did not result in any particular change in the trend of photosynthesis, but brought about a significant change in the partitioning of dry matter. This revised version was published online in July 2006 with corrections to the Cover Date.     

Branching Principles Governing the Architecture of Cornus kousa (Cornaceae)

The complex structure of the crown of Cornus kousa, generallyfive-forked in vegetative branching and two-forked in reproductivebranching, is analysed quantitatively and described by two basicbranching principles: decussate phyllotaxy and the resettingrule for planes of branching. Most Cornus species have opposite,decussate phyllotaxis. The leaf pair (with axillary buds) definesthe branching plane of a node. Because of regular phyllotaxis,the fundamental branching pattern is that every branching planealong an axis is perpendicular to the preceding one. However,the first node of a lateral horizontal shoot always has a horizontalbranching plane; we term this the resetting rule. We observedthat resetting occurs when the first nodes initiated in thevertical plane are repositioned by a twisting of their firstinternodes. All later nodes alternate directions, i.e. showusual decussate alternation. Foliage leaf nodes usually producethree-forked branchings. When vegetative winter buds are formed,a foliar node and adjacent scale leaf node produce a five-forkedbranching. When reproductive winter buds with a terminal inflorescenceare formed, the last foliar node and two adjacent scale leafnodes can produce a variety of branchings but usually producean equal two-forked branching. To understand better the architecturein C. kousa, we contrast it with C. capitata which does notproduce buds with scale leaves and whose vegetative nodes areclearly separated. Copyright 1999 Annals of Botany Company Branching pattern, Cornaceae, Cornus kousa, decussate branching, dogwood, Japanese strawberry tree, tree architecture, tree geometry.     

Analysing branching pattern in plantations of young red oak trees (Quercus rubra L., Fagaceae)

Branching patterns of the growth units of monocyclic or bicyclic annual shoots on the main axis of 5-year-old red oaks were studied in a plantation in south-western France. For each growth unit, the production of axillary structures associated with each node was described in the form of a sequence. For a given category of growth units, homogeneous zones (i.e. zones in which composition in terms of type of axillary production does not change substantially) were identified on such sequences using a dedicated statistical model called a hidden semi-Markov chain. For instance, on the first growth unit of bicyclic annual shoots, a zone with 1-year-delayed branches was found systematically below a zone with buds and one-cycle-delayed branches. Branching patterns shown by the growth unit of monocyclic annual shoots and on the second growth unit of bicyclic annual shoots were very similar. Branches with a 1-year delay in development tended to be polycyclic at the top of the growth unit and monocyclic lower down. The number of nodes shown by the branched zone of the growth unit of monocyclic annual shoots was stable, irrespective of the total number of nodes of the growth unit. In contrast, the second growth unit of bicyclic annual shoots exhibited a correlation between the number of nodes in the branching zone and the total number of nodes. The contribution made by this method to understanding plant functioning is discussed.     

Determination of resistance to low temperatures of winter buds on lateral shoot present in Karaerik (<Emphasis Type="Italic">Vitis vinifera</Emphasis> L.) grape cultivar

This study aims to determine the low temperature resistance of dormant buds at nodes with or without lateral shoots of Karaerik grape cultivar, and explain the relationship between the resistance and biochemical parameters in this grape cultivar. In this study, the mean values of high temperature exotherms (HTEs), low temperature exotherms (LTEs), water, reducing sugar, total soluble protein contents and antioxidant enzyme activities of dormant buds taken from nodes with or without lateral shoots were determined. The experiment has been found that buds in nodes with lateral shoots showed HTE and LTE at higher temperatures (HTE average ?6.7 °C and LTE average ?8.3 °C) than buds (HTE average ?7.9 °C and LTE average ?11.5 °C) in nodes without lateral shoots; therefore, buds in nodes with lateral shoots had less tolerance to low temperature. Additionally, lower sugar (average 41.05 mg g^?1), protein (average 1.61 mg g^?1), superoxide dismutase (average 425.27 EU g^?1 tissue), peroxidase (average 2516.1 EU g^?1 tissue) and polyphenol oxidase (average 7283.1 EU g^?1 tissue) were determined for buds taken from nodes with lateral shoots. Due to the fact that dormant buds taken from nodes with lateral shoots decreased the resistance to low temperatures, this research suggests that these lateral shoots should be excised with the summer pruning at the regions, where low temperatures caused the damages.     

Cultivar x environment interactions in sorghum,Sorghum bicolor (L.) moench

Summary The most significant and important interactions in 2, and 3-year sorghum zonal trials were location x year, cultivar x location and cultivar x location x year. Cultivar x year interaction was significant in one out of four ecologic zones used in the trials. The variance components were relatively small with the second order interaction variance component larger than the first order types involving cultivars. Environmental variance was the largest in all four zones.Computations on theoretical standard error of cultivar means suggest that six replications, eight locations and four years is an ideal testing procedure in the Northern Guinea Savanna, while in the Sudan Savanna, the combination is better with four replications, eight locations and three years. The true value or performance of a variety is most effectively obtained by increasing the number of years, while increasing number of replications is the least effective.     

Plant genotype and the preference and performance of herbivores: cultivar affects apple resistance to the florivorous weevil Anthonomus pomorum

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SOMATIC GENETIC ANALYSIS OF THE APICAL LAYERS OF CHIMERAL SPORTS IN CHRYSANTHEMUM BY EXPERIMENTAL PRODUCTION OF ADVENTITIOUS SHOOTS

Many commercial chrysanthemum cultivars display unusual somatic variability. The ‘Indianapolis’ family of chrysanthemum sports was analyzed for the genetic potential for color of each of the three layers in the apical meristem of their shoots. Populations of each cultivar were grown and sectors and off-color plants recorded. The location of the pigment within cells and between tissues was determined by microscopic examination of free-hand sections of fresh petals. Adventitious buds were forced from the stems of each cultivar by excising all normal lateral buds. These observations, showed 12 of the 16 ‘Indianapolis’ cultivars to be periclinal chimeras. Adventitious shoots often originated from two or more cells, derived from at least two different apical layers, and thus were themselves periclinal chimeras. While somatic mutation is the ultimate source of the variability in ‘Indianapolis’ chrysanthemums, the most frequent type of sporting resulted from the loss in mitosis of a chromosome carrying a supressor for the formation of yellow chromoplasts, giving a yellow sector or shoot. Sectors resulting from rearrangement of layers in the periclinal chimeras were less frequent than the sectors from chromosome loss.     

Branching of annual shoots in common walnut (Juglans regia L.) as affected by bud production and indol-3-acetic acid (IAA) content

Relationship of bud production (axillary and terminally) of annual shoot (1Y) and/or the content of bud-derived indol-3-acetic acid (IAA) to branching of the 1Y was studied in common walnut (Juglans regia L.), cvs. Franquette and Lara. Cultivar-related branch architecture was determined. Lara tended to branch more densely than Franquette (53 vs. 42%). Significantly more fruiting off-spring shoots (FO) than vegetative ones (VO) grew-out per 1Y in both cultivars, whereas the ratio FO/VO of Lara exceeded that of Franquette by four times. An acrotonic branching pattern was more strongly expressed in Lara compared to Franquette. Bud-derived IAA was influenced by the cultivar (Franquette had 3.6 times more cumulative IAA along the 1Y than Lara), and by the relative position (terminal, subterminal, medial and basal) of the buds along 1Y. An opposite relationship between branching density and cumulative IAA content was established in both cultivars. At the 1Y relative position level, the opposite ratio between branching density and IAA content was clearly shown only on the basal position of the bud along 1Y in the Lara cultivar. Such an inconsistent linkage between bud production and the IAA spatial distribution along the 1Y illustrated that hormonal factors probably weakly affect the branching of Franquette and Lara. The length of the parent 1Y, the position of the buds along the 1Y-length, and the fate of the buds seemed to have a stronger influence on the bud out-growth and further development of the off-springs. In further analyses, seasonal fluctuations of the IAA, and the following activity of the buds should be investigated in order to improve the understanding of a complex branching phenomenon in walnut.     

Changes of endogenous hormones in lateral buds of chrysanthemum during their outgrowth

The character of branching for two chrysanthemum (Chrysanthemum × morifolium) cvs. Jinghai and Jingyun was observed, and the changes of endogenous hormones in apical and lateral buds were investigated to determine the relationship between the pattern of hormone distribution, apical dominance, and lateral bud outgrowth. The growth rate of Jinghai lateral buds was higher than that of Jingyun. In vegetative growth stage, IAA level in apical buds of Jingyun was significantly higher than in Jinghai. After flower induction, IAA level in apical buds of two cultivars decreased remarkably, but the IAA level decreased in Jingyun faster than in Jinghai. These results showed that the higher was the IAA level in apical buds the stronger was inhibition of lateral bud outgrowth. An increase in IAA and iP/iPA and a decrease in ABA concentrations were closely associated with lateral bud growth alterations in chrysanthemum.     

The state of water in acclimating vegetative buds from Malus and Amelanchier and its relationship to winter hardiness

The relationship between freezable water and cold hardiness during acclimation was studied using vegetative buds from several apple ( Malus domestica Borkh) cultivars and from one saskatoonberry ( Amelanchier alnifolia Nutt. cv. Smoky) cultivar. According to leakage data and visual assessments of cortical browning, vegetative buds of all cultivars were most tolerant to subfreezing temperatures in January. The hardy condition was also associated with maximum tolerance to desiccation. Qualitative features of freezing exotherms (number of peaks and temperature of the transition) were not correlated with the hardy condition in the tissues. However, the amount of unfrozen water, determined by quantifying the energy of the exotherms, increased with increasing hardiness. In buds that survived exposure to −45°C, freezing reduced the intracellular water content, but only to levels above the critical moisture content for desiccation damage. In buds that did not survive exposure to −45°C, freezing reduced the water content to levels equal to or less than the critical moisture content for desiccation damage. These observations suggest that the freezing of water in nonhardy tissue dried the tissue to moisture levels at which severe dehydration damage occurred. It appears that acclimation of vegetative apple buds involves at least two processes: (1) an increase in tolerance to dehydration and (2) an increase in the level of unfreezable water.     

In vitro branching in relation to repeated subculture in two cultivars of Potentilla fruticosa

The in vitro branching pattern of two ornamental cultivars of Potentilla fruticosa L. was analyzed quantitatively with respect to repeated subculture. In both cultivars, in vitro multiplication occurred predominately by axillary branching. There was little callus and few adventitious shoots were produced. In the more vigorous cultivar, Snowbird, there were up to 5 orders of branching. In the other cultivar, Pink Whisper, there were rarely more than 3 orders of branching. In both cultivars, apical dominance was weak in vitro and all but the youngest axillary buds were released. Differences in branching appeared to be related to the degree of apical control of lateral shoot growth. In Snowbird, where control was weak, lateral branches grew vigorously producing several bud sites for higher order branching. For both cultivars, shoot multiplication was at its maximum at the beginning of the experiment and then declined to a more or less steady level. These patterns indicated that apical control was weakest at the beginning of the experiment and then increased during repeated subculture. Nevertheless, in Snowbird, there was evidence of a gradual increase in multiplication rate toward the end of the experiment.Contribution no. 908.     

Biodiversity in agricultural landscapes: The effect of apple cultivar on epiphyte diversity

In natural systems, extended phenotypes of trees can be important in determining the species composition and diversity of associated communities. Orchards are productive systems where trees dominate, and can be highly biodiverse, but few studies have considered the importance of tree genetic background in promoting associated biodiversity. We tested the effect of apple cultivar (plant genetic background) on the diversity and composition of the associated epiphytic bryophyte community across a total of seven cultivars in five productive East Anglian orchards where each orchard contained two cultivars. Data were collected from 617 individual trees, over 5 years. Species richness and community composition were significantly influenced by both orchard and cultivar. Differences among orchards explained 16% of the variation in bryophyte community data, while cultivar explained 4%. For 13 of the 41 bryophyte species recorded, apple cultivar was an important factor in explaining their distribution. While the effects of cultivar were small, we were able to detect them at multiple levels of analysis. We provide evidence that extended phenotypes act in productive as well as natural systems. With issues of food security ranking high on the international agenda, it is important to understand the impact of production regimes on associated biodiversity. Our results can inform mitigation of this potential conflict.     

Freezing of water in dormant vegetative apple buds in relation to cryopreservation

Various empirical prefreezing protocols have been used to facilitate cryopreservation of dormant buds from woody plants. The objective of this research was to determine the quantity of water remaining in liquid phase, under different prefreezing conditions using pulsed nuclear magnetic resonance spectroscopy of dormant apple (Malus domestica Mill.) buds from three cultivars. During prefreezing, the quantity of water remaining in the liquid phase was less at −40°C<−30°C<−20°C for all cultivars tested. The prefreezing temperature had a greater influence on reducing the quantity of liquid water than the duration of prefreezing. Prefreezing to −40°C for 24 hours was optimal for `Patterson' and `McIntosh,' the hardiest cultivars, compared to −30°C for 24 hours with `Red Delicious.' Cryopreservation of dormant apple buds depends upon the quantity of liquid water during prefreezing, prior to immersion in liquid nitrogen, and upon the cultivar.     

Comparison between volatile emissions from transgenic apples and from two representative classically bred apple cultivars

While most risk assessments contrast a transgenic resistant to its isogenic line, an additional comparison between the transgenic line and a classically bred cultivar with the same resistance gene would be highly desirable. Our approach was to compare headspace volatiles of transgenic scab resistant apple plants with two representative cultivars (the isogenic ‘Gala’ and the scab resistance gene-containing ‘Florina’). As modifications in volatile profiles have been shown to alter plant relationships with non-target insects, we analysed headspace volatiles from apple plants subjected to different infection types by gas chromatography-mass spectrometry. Marked differences were found between healthy and leafminer (Phyllonorycter blancardella) infested genotypes, where emissions between the transgenic scab resistant line and the two cultivars differed quantitatively in four terpenes and an aromatic compound. However, these modified odour emissions were in the range of variability of the emissions recorded for the two standard cultivars that proved to be crucial references.     

桃树修剪分枝模式的模拟

在不同修剪手法下,对栽培桃树(Prunuspersica(L.)Batsch)不同母枝上的分枝模式进行了比较研究.从分枝模式来看:修剪后的母枝基本由3个不同的区域组成,基部是不萌发的潜伏芽形成的未分枝区域;中部是延迟分枝和多次分枝组成的分枝区域(主要的枝条类型有短枝、长枝和多次枝);顶部是被剪除的部分.我们通过隐式半马尔可夫模型来模拟这一分枝模式,主要是定量描述1次枝和多次枝在母枝上的数量及其分布状况.在上述模型中,未分枝区、延迟分枝区和多次分枝区称为瞬时态,被剪除的部分称为吸收态.模拟的结果与观察的结果进行对比后发现,两者具有很好的一致性.这说明隐式半马尔可夫模型是模拟植物分枝过程的一种有效方法,尽管隐式半马尔可夫链模型只是一个描述性的模型,但仍能对其所描述的生物现象进行解释,在预测修剪手法对母枝分枝模式影响方面比传统的方法具有明显的优势.本研究结果是建立三维虚拟桃树树冠分枝结构的基础.