Species composition and distribution of Zoarcidae in the northern part of the Sea of Japan from the data of trawl surveys

Species composition, ratio, distribution, and size composition of Zoarcidae on the shelf and the upper part of the continental slope of the northern part of Japan at depths of 5 to 700 m were analyzed on the basis of four trawl surveys. In the studied area, nine species of Zoarcidae were found: Bilabria sp., Bothrocara hollandi, Davidijordania lacertina, Lycodes japonicus, L. nakamurae, L. cf. yamatoi, L. tanakae, L. toyamensis, and L. cf. ushakovi. Data on catches, density of distribution at different depths, and size composition are listed for each species. Four species: B. hollandi, L. tanakae, L. nakamurae, and L. cf. yamatoi have the greatest biomass and numbers among zoarcids in the northern part of the Sea of Japan. It was shown that zoarcids from the northern part of the Sea of Japan, similar to most demersal fish, perform seasonal migrations from the depths of 200 to 500 m, which they inhabit in the summer period, to depths larger than 400 m in the winter. It was found that the most common species of Zoarcidae (B. hollandi, L. tanakae, L. nakamurae, L. cf. yamatoi, and L. toyamensis) dwell mainly in waters of the intermediate water mass and the upper part of the Sea of Japan water mass. These species are abundant at depths larger than 200 m, which permits assigning them to a mesobenthal ecological group. All of the studied species of Zoarcidae from the given region are stenothermal—the temperature range of their habitation is below 2°C, as a rule, from 0.3 to 2.5°C.     

Revision of <Emphasis Type="Italic">Rhabdolepis macropterus</Emphasis> (Bronn, 1829) (Osteichthyes,lower Actinopterygii; Lower Permian,SW Germany)

The neotype of Rhabdolepis macropterus is revisited. Together with additional material, a new reconstruction of the skull in lateral view is presented. Main characters of this species of the family Elonichthyidae are a ventral accessory operculum which completely separates the operculum from the suboperculum, and further the border between the frontal (parietal) and the parietal (postparietal) bones lying anterior to the border between the dermosphenotic and the dermopterotic bones. The diagnosis of genus Rhabdolepis is renewed. The species Rh. macropterus is compared with the sympatric elonichthyid species Rhabdolepis saarbrueckensis and Elonichthys fritschi.     

SSR-based molecular profiling of 237 persimmon (<Emphasis Type="Italic">Diospyros kaki</Emphasis> Thunb.) germplasms using an <Emphasis Type="Italic">ASTRINGENCY</Emphasis>-linked marker

Pollination-constant non-astringent (PCNA) trait is desirable in persimmon production because it confers natural astringency loss in mature persimmon fruit. Expression of the PCNA trait requires six homozygous recessive PCNA (ast) alleles at the single ASTRINGENCY (AST) locus in hexaploid persimmon. When crossing non-PCNA accessions to breed PCNA offspring, knowledge of ast and non-PCNA (AST) allele dosage in the parental accessions is important, because more PCNA offspring can segregate from a non-PCNA parent with more ast and fewer AST alleles. Previously, we have demonstrated that a region linked to the AST locus has numerous fragment size polymorphisms with varying numbers of simple sequence repeats. Here, we reveal the polymorphisms in this region in a broad collection of persimmon germplasms. Among 237 accessions, we distinguished 21 AST- and 5 ast-linked fragments with different sizes. Based on the number of fragments detected per individual, we identified 21 non-PCNA accessions with three different ast alleles; by crossing these with a PCNA parent, we obtain PCNA offspring under autohexaploid inheritance. Furthermore, AST and ast allelic combination patterns in hexaploid persimmon were shown to be applicable to cultivar identification of non-PCNA accessions. We directly sequenced ast-linked fragments from 48 accessions with one-size peak of ast-linked fragment and found two distinctive groups of fragments based on single nucleotide polymorphisms. This result suggests that a bottleneck event occurred during ast allele development. We conclude that our fragment size profile can be used to accelerate PCNA breeding that uses non-PCNA parents and to study ast allele accumulation in persimmon.     

The colonial ascidian <Emphasis Type="Italic">Diplosoma listerianum</Emphasis> enhances the occurrence of the hydrozoan <Emphasis Type="Italic">Obelia</Emphasis> sp. during early phases of succession

Recruitment patterns of sessile species often do not reflect the composition of the local propagule pool. This is, among other processes, attributed to the stimulation or inhibition of settlement by resident species. In an experimental study, we evaluated the effects of different densities of the ascidian Diplosoma listerianum on the settlement of the hydrozoan Obelia sp. For this, we monitored the cover of the dominant fouler Obelia sp. on vertically orientated PVC tiles, which were either bare or pre-seeded with two different densities (sparse or dense) of Diplosoma colonies, over the course of 8 weeks. The settlement tiles were deployed at two study sites in La Herradura Bay, Chile. The presence of D. listerianum enhanced the settlement or the growth or both of the colonial hydrozoan, but this effect disappeared within 4–8 weeks. Furthermore, we tested whether the initial enhancement of Obelia sp. by Diplosoma colonies goes back to the fact that larvae, which reject the ascidian tunic as a settlement substratum after a first contact, colonize nearby surfaces because of their limited mobility. However, we found no support for this assumption. We rather suggest that D. listerianum facilitated colonization indirectly by the accumulation of organic material in its vicinity and/or by its pumping activity. Initial resident-mediated enhancement of the hydrozoan was overridden by processes such as competition between later colonizers within the course of weeks and we could not detect any lasting effects of D. listerianum on the structure of the developing communities.     

In-depth proteomic analyses of <Emphasis Type="Italic">Haliotis laevigata</Emphasis> (greenlip abalone) nacre and prismatic organic shell matrix

Background

The shells of various Haliotis species have served as models of invertebrate biomineralization and physical shell properties for more than 20 years. A focus of this research has been the nacreous inner layer of the shell with its conspicuous arrangement of aragonite platelets, resembling in cross-section a brick-and-mortar wall. In comparison, the outer, less stable, calcitic prismatic layer has received much less attention. One of the first molluscan shell proteins to be characterized at the molecular level was Lustrin A, a component of the nacreous organic matrix of Haliotis rufescens. This was soon followed by the C-type lectin perlucin and the growth factor-binding perlustrin, both isolated from H. laevigata nacre, and the crystal growth-modulating AP7 and AP24, isolated from H. rufescens nacre. Mass spectrometry-based proteomics was subsequently applied to to Haliotis biomineralization research with the analysis of the H. asinina shell matrix and yielded 14 different shell-associated proteins. That study was the most comprehensive for a Haliotis species to date.

Methods

The shell proteomes of nacre and prismatic layer of the marine gastropod Haliotis laevigata were analyzed combining mass spectrometry-based proteomics and next generation sequencing.

Results

We identified 297 proteins from the nacreous shell layer and 350 proteins from the prismatic shell layer from the green lip abalone H. laevigata. Considering the overlap between the two sets we identified a total of 448 proteins. Fifty-one nacre proteins and 43 prismatic layer proteins were defined as major proteins based on their abundance at more than 0.2% of the total. The remaining proteins occurred at low abundance and may not play any significant role in shell fabrication. The overlap of major proteins between the two shell layers was 17, amounting to a total of 77 major proteins.

Conclusions

The H. laevigata shell proteome shares moderate sequence similarity at the protein level with other gastropod, bivalve and more distantly related invertebrate biomineralising proteomes. Features conserved in H. laevigata and other molluscan shell proteomes include short repetitive sequences of low complexity predicted to lack intrinsic three-dimensional structure, and domains such as tyrosinase, chitin-binding, and carbonic anhydrase. This catalogue of H. laevigata shell proteins represents the most comprehensive for a haliotid and should support future efforts to elucidate the molecular mechanisms of shell assembly.

     

Shell form,growth and life span of <Emphasis Type="Italic">Astarte arctica</Emphasis> and <Emphasis Type="Italic">A. borealis</Emphasis> (Mollusca: Bivalvia) from the subtidal zone of northeastern Sakhalin

This study investigates changes in body proportions during ontogenesis of the bivalves Astarte arctica and A. borealis from the subtidal zone of northeastern Sakhalin. Marked differences in the shell form of bivalves were found. The shell of A. arctica is convex and compact, shell length and height are comparable, and shell width is more than 50% of shell height. A. borealis has a slightly elongate and flattened shell, its width is less than 50% of its height. Shell proportions can provide a reliable criterion for differentiating the species. Mollusks grow at nearly the same rate but attain different maximum sizes. Linear growth is described by Bertalanffy’s equation: L_t = 48.2[1 ? e ^{?0.4850(t ? 0.4396)}] for A. arctica and L_t = 53.1[1 ? e^{?0.4106(t ? 0.4253)}] for A. borealis. In northeastern Sakhalin, the life span of A. arctica is 7 years and of A. borealis, 8 years. By life span, the two bivalve species from Sakhalin slightly differ from their counterparts in other regions, particularly the arctic seas.     

Study of Surface Plasmon Resonances of Core-Shell Nanosphere: A Comparison between Numerical and Analytical Approach

An investigation of the wavelength dependent extinction spectra of coated sphere with different core@shell compositions based on discrete dipole approximation technique has been presented in this paper. We have used combinations of A g, A u, and S i O ₂ for this analysis. Specifically, we study the impact of spherical core-shell thickness on its surface plasmon resonance (SPR) peak positions and corresponding spectral widening in distinct regimes of the spectrum. We observe that SPR peak of core-shell nanoparticle(CSNP) can be tuned over the visible to near-infrared spectrum region by manipulating the core/shell ratio and composition of core and shell. Specifically, for dielectric@metal (core@shell) nanoparticle, SPR peak position shifted towards lower wavelength as we increase the shell thickness, which is opposite to the SPR behavior of metal@dielectric. The extinction spectrum shows linear relation between SPR position and thickness of the shell. Further, we observed two resonant peaks for the case of metal@metal CSNP. The SPR peak of Au@Ag (a _eff 100 nm with shell thickness 8 nm) reveals two resonant peak corresponding to Au (594 nm) in red domain, while the peak in blue domain corresponds to Ag (402 nm). We also observe that optical resonance of CSNP can be tuned across the near-infrared region by changing the surrounding medium of higher refractive index. Further, near field pattern of core@shell geometry at resonance wavelength is also shown in the present study. We have also compared the numerical and analyticalmethod for smaller size CSNP with varying thickness and the results show good agreement.     

The expression level of anthocyanidin synthase determines the anthocyanin content of crabapple (<Emphasis Type="Italic">Malus</Emphasis> sp.) petals

In addition to contributing to the coloration of plant organs and their defense against herbivores, the consumption of anthocyanins in the human diet has a number of health benefits. Crabapple (Malus sp.) represents a valuable experimental model system to research the mechanisms and regulation of anthocyanin accumulation, in part due to the often vivid and varied petal and leaf coloration that is exhibited by various cultivars. The enzyme anthocyanidin synthase (ANS) plays a pivotal role in anthocyanin biosynthesis; however, the relationship between ANS expression and petal pigmentation has yet to be established in crabapple. To illuminate the mechanism of anthocyanin accumulation in crabapple petals, we evaluated the expression of two crabapple ANS allelic genes (McANS-1 and McANS-2) and the levels of anthocyanins in petals from cultivars with dark red (‘Royalty’) and white (‘Flame’) petals, as well as another (‘Radiant’) whose petals have an intermediate pink color. We determined that the expression of McANS in the three cultivars correlated with the variation of anthocyanin accumulation during different petal developmental stages. Furthermore, transgenic tobacco plants constitutively overexpressing one of the two McANS genes, McANS-1, had showed elevated anthocyanin accumulation and a deeper red coloration in their petals than those from untransformed control lines. In conclusion, we propose that McANS are responsible for anthocyanin accumulation during petal coloration in different crabapple cultivars.     

A new species of <Emphasis Type="Italic">Hamaticolax</Emphasis> Ho &amp; Lin, 2006 (Copepoda: Bomolochidae) from deep water macrourids in the Mediterranean

Hamaticolax resupinus n. sp. is described from specimens collected from the gill cavities of Coelorinchus mediterraneus Iwamoto & Ungaro and Coryphaenoides mediterraneus (Giglioli) (Gadiformes: Macrouridae) caught in the Western Mediterranean Sea at depths between 1,236 and 1,626 m. Hamaticolax resupinus n. sp. closely resembles H. maleus Oldewage, 1994, but differs from the latter by its smaller body size and in having a genital double-somite in the female that is markedly wider than the free abdominal somites and has strongly convex lateral margins. The new species is only the second bomolochid found on a macrourid host and is the first from depths in excess of 1,200 m. Hamaticolax resupinus n. sp. also represents the first parasitic copepod recorded from Coe. mediterraneus and only the third one from Cor. mediterraneus worldwide.     

Population structure and distribution of deep-water cardinal fish <Emphasis Type="Italic">Epigonus occidentalis</Emphasis> (Epigonidae) and <Emphasis Type="Italic">Epigonus pandionis</Emphasis> (Epigonidae) in the Colombian Caribbean Sea

Cardinal fish are commercially valuable species. In the Colombian Caribbean Sea E. occidentalis and E. pandionis occurred in 37and 35% of tows during a research trawl survey (>200 m), respectively and the biology of these vulnerable species is unknown. The aim of this work is to describe the spatial distribution patterns of biomass, size structure and morphometric relationships of E. occidentalis and E. pandionis in deep waters of the Colombian Caribbean Sea. The samples were collected by trawling in depths between 200 and 550 m. No statistical differences were found in size by sexes in both species. In female and male E. occidentalis the growth was isometric, while in female and male E. pandionis it was positive allometric. E. occidentalis occurred mainly in the northern zone of Colombian Caribbean Sea, with highest aggregations off Santa Marta and Riohacha. E. pandionis was distributed in the northern area between Santa Marta and Riohacha and in the southern area between Cartagena and Morrosquillo Gulf. However, before the exploitation of these species is considered, further research is required to determine basic life history traits, such as growth, reproduction, recruitment, and mortality.     

New taxa of oribatid mites from Korup National Park,Cameroon. Genus <Emphasis Type="Italic">Galumna</Emphasis> (Acari,Oribatida, Galumnidae)

Two new species of oribatid mites of the genus Galumna (Oribatida, Galumnidae) are described from litter and soil in the Korup National Park, Cameroon. Galumna korupensis sp. n. differs from Galumna tricuspidata Engelbrecht, 1969 by the smaller body size, the presence of two oval postanal porose areas, one tooth on each lamellar lines and striate genital plates, and the absence of median pore and lateral teeth on the rostrum. Galumna cameroonica sp. n. differs from Galumna incisa Mahunka, 1982 by the presence of long cilia on bothridial heads, band-like postanal porose area, striate genital plates, three pairs of notogastral porose areas, and the position of notogastral lyrifissures im.     

Host location and selection by the symbiotic sargassum crab <Emphasis Type="Italic">Portunus sayi</Emphasis>: the role of chemical,visual and tactile cues

The Sargassum community consists of a unique and diverse assemblage of symbiotic fauna critical to pelagic food chains. Associated symbionts presumably have adaptations to assist in finding Sargassum. In situ scattered Sargassum patches accumulate as they are pushed toward the shoreline (via wind, waves, currents or tides) and are frequently less than 1 m apart and in depths of 10 cm or less as the patches approach the shoreline Crabs, and other symbiotic fauna, must relocate to another patch that is seaward in direction or likely perish as their current patch will likely become beached. This study investigated sensory cues used for host location and selection by the Sargassum crab, Portunus sayi. Chemical detection trials were conducted with a two-chamber choice apparatus with Sargassum spp. and Thalassia testudinum as habitat source odors. Visual detection trials (devoid of chemical cues) and habitat selection trials were conducted in which crabs were given a choice between hosts. Results showed that P. sayi responded to chemicals from Sargassum spp. Crabs visually located host habitats but did not visually distinguish between different hosts. In host selection trials, crabs selected Sargassum spp. over artificial Sargassum and T. testudinum. These results suggest that crabs isolated from Sargassum likely use chemoreception; within visual proximity of a potential patch, crabs likely use both chemical and visual information.     

Comparative analysis of diploid species of <Emphasis Type="Italic">Avena</Emphasis> L. using cytogenetic and biochemical markers: <Emphasis Type="Italic">Avena canariensis</Emphasis> Baum et Fedak and <Emphasis Type="Italic">A. longiglumis</Emphasis> Dur.

The diploid oat species containing the A genome of two types (Al and Ac) were studied by electrophoresis of grain storage proteins (avenins), chromosome C-banding, and in situ hybridization with probes pTa71 and pTa794. The karyotypes of the studied species displayed similar C-banding patterns but differed in size and morphology of several chromosomes, presumably, resulting from structural rearrangements that took place during the divergence of A genomes from a common ancestor. In situ hybridization demonstrated an identical location of the 45S and 5S rRNA gene loci in Avena canariensis and A. longiglumis similar to that in the A. strigosa genome. However, the 5S rDNA locus in A. longiglumis (5S rDNA1) was considerably decreased in the chromosome 3Al long arm. The analysis demonstrated that these oat species were similar in the avenin component composition, although individual accessions differed in the electrophoretic mobilities of certain components. A considerable similarity of A. canariensis and A. longiglumis to the Avena diploid species carrying the As genome variant was demonstrated.     

Morphological peculiarities of <Emphasis Type="Italic">Fragilidium mexicanum</Emphasis> Balech, 1988 (Dinophyta) from the Far-Eastern Seas of Russia

The vegetative cells of Fragilidium mexicanum Balech are recorded from the Far Eastern seas of Russia (Sea of Japan and Sea of Okhotsk) for the first time. Morphological study of both cultured and wild cells of F. mexicanum showed that the shape of the cell and the first (1″) and second (2″) precingular plates, the direction of the slot in plate 1″, and the shape of the anterior sulcul plate (S.a.) vary greatly. These features bear similarity to those of F. mexicanum, as well as a closely related species, F. subglobosum. The most conservative characters distinguishing the two species are the shape and size of the first and seventh postcingular plates and the shape of the posterior sulcal plate.     

Comparative Analysis of the Biological Activity and Chromatographic Profiles of the Extracts of <Emphasis Type="Italic">Beauveria bassiana</Emphasis> and <Emphasis Type="Italic">B. pseudobassiana</Emphasis> Cultures Grown on Different Nutrient Substrates

Soil, enodphytic, and insect-pathogenic micromycetes of the genus Beauveria are widespread in nature and are important producers on mycoinsecticides, enzymes, and pharmacologically usable and toxic compounds. The goal of the work was to determine chemodiagnostic approaches to differentiation of Beauveria cryptic species using the strains B. bassiana BBL and B. pseudobassiana BCu22 by comparing their toxicological properties (insecticidal, antimicrobial, phytotoxic, cytotoxic, and esterase-inhibition activity) and metabolite profiles (TLC and HPLC/DAD patterns) of the extracts from the cultures of these fungi growing on different loose substrates, on solid and liquid media. It was shown that when the strains were cultured in liquid media (SDAY and Adámek medium) and on solid substrates (millet and Czapek agar medium), they could be differentiated by the extract yield and chromatographic profiles, as well as by their insecticidal, antifungal, and cytotoxic activity. Thus, antifungal properties were more pronounced in B. pseudobassiana BCu22 grown in liquid Adámek and SDAY media, while cytotoxic properties were more notable in B. bassiana BBL grown in Adámek medium and on millet. Insecticidal properties of the extracts from these cultures varied depending on the substrate composition. Since the extracts of the studied fungi exhibited a broad spectrum of biological activity, the toxic properties of Beauveria spp. should be considered in the course of assessment of safety of these fungi as bioinsecticides.     

Alteration of soil properties by the invasive tree <Emphasis Type="Italic">Psidium cattleianum</Emphasis> along a precipitation gradient on O'ahu Island,Hawai'i

To test the effects of invasion by strawberry guava trees (Psidium cattleianum) on the forest soil ecosystem, we compared soil properties between pairs of adjacent native and P. cattleianum stands. We set up six study sites that had developed under different mean annual precipitation levels in the Ko'olau Mountains on the island of O'ahu, Hawai'i. Accumulated litter mass and soil pH decreased with precipitation in the native stands. Invasion by P. cattleianum increased the amount of litter and reduced the differences in soil water content and pH among the sites. We compared the decomposition process using the Tea Bag Index, which is determined by the difference in dry mass of commercially available green and rooibos teas in nylon mesh bags before and after 90 days of burial. Psidium cattleianum increased the initial litter decomposition rate irrespective of precipitation and other soil properties. On the other hand, P. cattleianum increased the long-term litter stabilization factor of the Tea Bag Index in wetter sites. The accumulation of litter was likely caused by indirect effects of P. cattleianum through the alteration of soil moisture properties. In summary, this study shows that invasion by P. cattleianum could alter the soil properties in both wet and mesic sites, suggesting the possibility of change in composition and/or function of decomposers.