Expression of fructokinase isoforms in the sugarcane culm

Two isoforms of fructokinase (FRK), FRK1 and FRK2, are present in sugarcane (Saccharum spp. var N19) internodal tissue. Both isoforms are highly specific for fructose as the hexose substrate. FRK2 is inhibited by fructose concentrations exceeding 0.1 mM and 50% inhibition is attained at 230 μM (K_i (Fru) = 160 μM), while FRK1 activity is not negatively affected even at 1.0 mM fructose. The ratio of FRK2 to FRK1 activity is dependent on the developmental stage of the tissue. FRK1 appears to be the isoform that is preferentially expressed in mature tissue. Total FRK activity decreases during tissue maturation. This is the result of changes in expression of the isoforms and not inactivation of existing protein. A mathematical method that allows accurate estimation of the activities of the two isoforms of FRK in crude sugarcane extracts is presented.     

Carbon allocation between tree root growth and root respiration in boreal pine forest

Soil respiration, i.e. respiration by mycorrhizal roots and by heterotrophic organisms decomposing above- and below-ground litters, is a major component in ecosystem carbon (C) balances. For decades, the paradigm has been that the biomass of fine roots of trees turns over several times a year, which together with large inputs of above-ground litter leaves little room for the contribution from root respiration. Here, we combine the results of a recent tree girdling experiment with the C budget of the classic Swedish Coniferous Forest (SWECON) project, in which root growth and turnover were estimated to be high. We observe that such a high rate of root turnover requires an unlikely high C use efficiency for root growth, and is not consistent with the 1:1 relation between root: heterotrophic respiration obtained in the girdling experiment. Our analysis suggests that 75% of the C allocated to roots is respired, while 25% is used for growth, and hence that root growth and turnover were grossly overestimated in the SWECON study.     

Photosynthesis,respiration, and carbon allocation of two cool-season perennial grasses in response to surface soil drying

The study was conducted to investigate carbon metabolic responses to surface soil drying for cool-season grasses. Kentucky bluegrass (Poa pratensis L.) and tall fescue (Festuca arundinaceae Schreb.) were grown in a greenhouse in split tubes consisting of two sections. Plants were subjected to three soil moisture regimes: (1) well-watered control; (2) drying of upper 20-cm soil (upper drying); and (3) drying of whole 40-cm soil profile (full drying). Upper drying for 30 d had no dramatic effects on leaf water potential (Ψ_leaf) and canopy photosynthetic rate (P_n) in either grass species compared to the well-watered control, but it reduced canopy respiration rate (R_canopy) and root respiration rate in the top 20 cm of soil (R_top). For both species in the lower 20 cm of wet soil, root respiration rates (R_bottom) were similar to the control levels, and carbon allocation to roots increased with the upper soil drying, particularly for tall fescue. The proportion of roots decreased in the 0-20 cm drying soil, but increased in the lower 20 cm wet soil for both grass species; the increase was greater for tall fescue. The Ψ_leaf, P_n, R_canopy, R_top, R_bottom, and carbon allocation to roots in both soil layers were all significantly higher for upper dried plants than for fully dried plants of both grass species. The reductions in R_canopy and R_top in surface drying soil and increases in root respiration and carbon allocation to roots in lower wet soil could help these grasses cope with surface-soil drought stress. This revised version was published online in June 2006 with corrections to the Cover Date.     

The role of respiration in tumor cell transition from the noncycling to the cycling state

Resting Yoshida AH130 hepatoma cells, harvested at the plateau of tumor development in vivo, were recruited into the cycling state following transfer to an in vitro system whereby these cells were incubated in the autologous ascites plasma diluted with buffered saline and enriched with glucose. In this system, cell recruitment into the phase of DNA synthesis (S phase) strictly depends on the activity of the respiratory chain and is abolished by anaerobiosis as well as by antimycin A, although the intracellular levels of ATP and the rate of protein synthesis are practically unaffected by these treatments. Furthermore, 2,4-dinitrophenol, at concentrations which uncouple the respiratory phosphorylation and hence enhance both glycolysis and oxygen consumption, does not hinder cell promotion into S phase. Thus, the absolute respiration dependence of cycling resumption by resting ascites cells does not seem to rely on respiratory ATP supply, but rather is linked to the electron flow through the respiratory chain.     

湿地碳循环过程与计算机模拟研究

湿地是地球4大陆地生态系统之一,全球湿地碳储量(450Pg C)约占陆地生态圈总碳量的20％。湿地系统因兼有“碳源”与“碳汇”的双重角色,其碳循环对大气全球碳收支以及与之有关的全球气候变化可能有重要影响。本文概述了湿地生态系统变化与碳排放的关系、湿地碳循环基本过程及其主要影响因子和湿地碳循环计算机模拟研究进展,提出了拟进一步研究的重要问题。     

Contribution of Chloroflexus respiration to oxygen cycling in a hypersaline microbial mat from Lake Chiprana, Spain

In dense stratified systems such as microbial mats, photosynthesis and respiration are coupled due to a tight spatial overlap between oxygen-producing and -consuming microorganisms. We combined microsensors and a membrane inlet mass spectrometer with two independent light sources emitting in the visible (VIS) and near infrared (NIR) regions to study this coupling in more detail. Using this novel approach, we separately quantified the activity of the major players in the oxygen cycle in a hypersaline microbial mat: gross photosynthesis of cyanobacteria, NIR light-dependent respiration of Chloroflexus-like bacteria (CLB) and respiration of aerobic heterotrophs. Illumination by VIS light induced oxygen production in the top approximately 1 mm of the mat. In this zone CLB were found responsible for all respiration, while the contribution of the aerobic heterotrophs was negligible. Additional illumination of the mat with saturating NIR light completely switched off CLB respiration, resulting in zero respiration in the photosynthetically active zone. We demonstrate that microsensor-based quantification of gross and net photosyntheses in dense stratified systems should carefully consider the NIR light-dependent behaviour of CLB and other anoxygenic phototrophic groups.     

Role of an insoluble thymus fraction in the differentiation of T lymphocytes]

An insoluble thymic fraction, free of both thymocytes and thymic hormone, was injected intraperitoneally to C57B1/6 mice. Following this injection, marked changes were noted in thymocyte populations: these consisted mainly in a significant increase of subcapsular prothymocytes, peaking at day 7. These observations were made by histological examination and confirmed by a study of physical characteristics of thymocyte populations. The possibility that this insoluble thymic fraction might have a biologically active component responsible for prothymocytes recruitment is examined.     

Carbon and nitrogen cycling in intertidal sediments near Doel,Scheldt Estuary

Carbon and nitrogen cycling in intertidal mud flat sediments in the Scheldt Estuary was studied using measurements of carbon dioxide, methane and nitrous oxide emission rates and pore-water profiles of CO₂, ammonium and nitrate. A comparison between chamber measured carbon dioxide fluxes and those based on CO₂ pore-water gradients using Fick's First law indicates that apparent diffusion coefficients are 2 to 28 times higher than bulk sediment diffusion coefficients based on molecular diffusion. Seasonal changes in gaseous carbon fluxes or CO₂ pore water concentrations cannot be used directly, or in a simple way, to determine seasonal rates of mineralization, because of marked seasonal changes in pore-water storage and exchange parameters.The annual amount of carbon delivered to the sediment is 42 mol m^–2, of which about 42% becomes buried, the remaining being emitted as methane (7%) or carbon dioxide (50%). Each year about 2.6 mol N m^–2 of particulate nitrogen reaches the sediment; 1.1 mol m^–2 is buried and 1.6 mol m^–2 is mineralized to ammonium. Only 0.42 mol m^–2 yr^–1 of the ammonium produced escapes from the sediments, the remaining being first nitrified (1.2 mol m^–2 yr^–1) and then denitrified (1.7 mol m^–2 yr^–1). Simple calculations indicate that intertidal sediments may account for about 14% and 30% of the total estuarine retention of nitrogen and carbon, respectively.     

Organic carbon cycling in Taylor Valley, Antarctica: quantifying soil reservoirs and soil respiration

Organic carbon reservoirs and respiration rates in soils have been calculated for most major biomes on Earth revealing patterns related to temperature, precipitation, and location. Yet data from one of the Earth's coldest, driest, and most southerly soil ecosystems, that of the McMurdo Dry Valleys of Antarctica, are currently not a part of this global database. In this paper, we present the first regional calculations of the soil organic carbon reservoirs in a dry valley ecosystem (Taylor Valley) and report measurements of CO₂ efflux from Antarctic soils. Our analyses indicate that, despite the absence of visible accumulations of organic matter in most of Taylor Valley's arid soils, this soil environment contained a significant percentage (up to 72%) of the seasonally unfrozen organic carbon reservoir in the terrestrial ecosystem. Field measurements of soil CO₂‐efflux in Taylor Valley soils were used to evaluate biotic respiration and averaged 0.10 ± 0.08 μmol CO₂ m^?2 s^?1. Laboratory soil microcosms suggested that this respiration rate was sensitive to increases in temperature, moisture, and carbon addition. Finally, a steady‐state calculation of the mean residence time for organic carbon in Taylor Valley soils was 23 years. Because this value contradicts all that is currently known about carbon cycling rates in the dry valleys, we suggest that the dry valley soil carbon dynamics is not steady state. Instead, we suggest that the dynamic is complex, with at least two (short‐ and long‐term) organic carbon reservoirs. We also suggest that organic carbon in the dry valley soil environment may be more important, and play a more active role in long‐term ecosystem processes, than previously believed.     

Carbon nutrition of seaweeds: Photosynthesis,photorespiration and respiration

Techniques are described for measuring gas exchange in seaweeds held in moist air (air suspension). In the species we have examined, oxygen has little or no effect on photosynthesis except at very low (50 μ1·1^?1) CO₂ concentration. Photorespiration could not be detected unless the seaweeds were treated simultaneously with high O₂ and low CO₂ or with the carbonic anhydrase inhibitor, diamox. However, sporulating and meristematic tissues exhibit oxygen-insensitive light respiration (CO₂production in light not associated with photorespiratory metabolism). Elevated pH in the surface water of seaweeds also caused light respiration. Oxygen-sensitive wound respiration was observed that could easily be mistaken for photorespiration. C₄ photosynthesis could not be detected. On the basis of several experimental approaches it was concluded that these seaweeds normally absorb bicarbonate rather than CO₂ from sea water. High CO₂ concentrations are required in gas streams aerating seaweed cultures in air or water suspension to maintain the bicarbonate concentration at levels normally found in sea water and to support normal levels of photosynthesis.     

Carbon allocation to defense, storage, and growth in seedlings of two temperate broad-leaved tree species

Optimal carbon allocation to growth, defense, or storage is a critical trait in determining the shade tolerance of tree species. Thus, examining interspecific differences in carbon allocation patterns is useful when evaluating niche partitioning in forest communities. We hypothesized that shade-tolerant species allocate more carbon to defense and storage and less to growth compared to shade-intolerant species. In gaps and forest understory, we measured relative growth rates (RGR), carbon-based defensive compounds (condensed tannin, total phenolics), and storage compounds (total non-structural carbohydrate; TNC) in seedlings of two tree species differing in shade tolerance. RGR was greater in the shade-intolerant species, Castanea crenata, than in the shade-tolerant species, Quercus mongolica var. grosseserrata, in gaps, but did not differ between the species in the forest understory. In contrast, concentrations of condensed tannin and total phenolics were greater in Quercus than in Castanea at both sites. TNC pool sizes did not differ between the species. Condensed tannin concentrations increased with increasing growth rate of structural biomass (GRstr) in Quercus but not in Castanea. TNC pool sizes increased with increasing GRstr in both species, but the rate of increase did not differ between the species. Accordingly, the amount of condensed tannin against TNC pool sizes was usually higher in Quercus than in Castanea. Hence, Quercus preferentially invested more carbon in defense than in storage. Such a large allocation of carbon to defense would be advantageous for a shade-tolerant species, allowing Quercus to persist in the forest understory where damage from herbivores and pathogens is costly. In contrast, the shade-intolerant Castanea preferentially invested more carbon in growth rather than defense (and similar amounts in storage as Quercus), ensuring establishment success in gaps, where severe competition occurs for light among neighboring plants. These contrasting carbon allocation patterns are closely associated with strategies for persistence in these species’ respective habitats.     

Carbon allocation in fruit trees: from theory to modelling

Carbon allocation within a plant depends on complex rules linking source organs (mainly shoots) and sink organs (mainly roots and fruits). The complexity of these rules comes from both regulations and interactions between various plant processes involving carbon. This paper presents these regulations and interactions, and analyses how agricultural management can influence them. Ecophysiological models of carbon production and allocation are good tools for such analyses. The fundamental bases of these models are first presented, focusing on their underlying processes and concepts. Different approaches are used for modelling carbon economy. They are classified as empirical, teleonomic, driven by source–sink relationships, or based on transport and chemical/biochemical conversion concepts. These four approaches are presented with a particular emphasis on the regulations and interactions between organs and between processes. The role of plant architecture in carbon partitioning is also discussed and the interest of coupling plant architecture models with carbon allocation models is highlighted. As an illustration of carbon allocation models, a model developed for peach trees, describing carbon transfer within the plant, and based on source–sink and Münch transport theory is presented and used for analyzing the link between roots, shoots and reproductive compartments. On this basis, the consequences of fruit load or plant pruning on fruit and vegetative growth can be evaluated.     

Proteome analysis of a rat liver nuclear insoluble protein fraction and localization of a novel protein, ISP36, to compartments in the interchromatin space

A rat liver nuclear insoluble protein fraction was analyzed to investigate candidate proteins participating in nuclear architecture formation. Proteins were subjected to two-dimensional separation by reversed-phase HPLC in 60% formic acid and SDS/PAGE. The method produced good resolution of insoluble proteins. One hundred and thirty-eight proteins were separated, and 28 of these were identified. The identified proteins included one novel protein, seven known nuclear proteins and 12 known nuclear matrix proteins. The novel 36 kDa protein was further investigated for its subnuclear localization. The human ortholog of the protein was expressed in Escherichia coli and antibodies were raised against the recombinant protein. Exclusive localization of the protein to the nuclear insoluble protein fraction was confirmed by cell fractionation followed by immunoblotting. Immunostaining of mouse C3H cells suggested that the 36 kDa protein was a constituent of an insoluble macromolecular complex spread throughout the interchromatin space of the nucleus. The protein was designated 'interchromatin space protein of 36 kDa', ISP36.     

Carbon stock and cycling in a bambooPhyllostachys bambusoides stand

Gross production and carbon cycling in aPhyllostachys bambusoides stand in Kyoto Prefecture, central Japan, were determined, and then a compartment model showing the carbon stock and cycling within the ecosystem was developed. Aboveground carbon stock was 52.3 tC ha⁻¹, increasing at a rate of 3.6 tC ha⁻¹ year⁻¹. Belowground carbon stock was 20.8 tC ha⁻¹ in the root system and 92.0 tC ha⁻¹ in the soil. Aboveground net production was 11.2 tC ha⁻¹ year⁻¹. Belowground net production was crudely estimated at 4.5 tC ha⁻¹ year⁻¹. The gross production was estimated at 41.8 tC ha⁻¹ year⁻¹ by summing the amount of outflow to the environment and the increment in biomass. Leaves consumed 13.7 tC ha⁻¹ year⁻¹ by respiration; the rest (41.8−13.7=28.1 tC ha⁻¹ year⁻¹) was surplus production of the leaves and flowed into the other compartments. The amounts of construction and maintenance respiration of the aboveground compartments were 3.4 and 18.5 tC ha⁻¹ year⁻¹, respectively. The annual amount of soil respiration was 11.2 tC ha⁻¹ year⁻¹. Soil respiration levels of 4.3 and 3.1 tC ha⁻¹ year⁻¹ were estimated for the flow of root respiration and root detritus. The proportion of net to gross production was 37%, which fell within the range of young and mature forests. A shorter life span of culms, compared to tree trunks, resulted in smaller biomass accumulation ratio (biomass/net production) in the ecosystem, of 4.66.     

Carbon and nitrogen cycling in North American boreal forests

A model of boreal forest dynamics was adapted to examine the factors controlling carbon and nitrogen cycling in the boreal forests of interior Alaska. Empirical relationships were used to simulate decomposition and nitrogen availability as a function of either substrate quality, the soil thermal regime, or their interactive effects. Test comparisons included black spruce forests growing on permafrost soils and black spruce, birch, and white spruce forests growing on permafrost-free soils. For each forest, simulated above-ground tree biomass, basal area, density, litterfall, moss biomass, and forest floor mass, turnover, thickness, and nitrogen concentration were compared to observed data. No one decay equation simulated forests entirely consistent with observed data, but over the range of upland forest types in interior Alaska, the equation that combined the effects of litter quality and the soil thermal regime simulated forests that were most consistent with observed data. For black spruce growing on permafrost soils, long-term simulated forest dynamics in the absence of fire resulted in unproductive forests with a thick forest floor and low nitrogen mineralization. Fires were an important means to interrupt this sequence and to restart forest succession.