The fluorescence spectra of red algae and the transfer of energy from phycoerythrin to phycocyanin and chlorophyll

1. The fluorescence spectra of the alga Porphyridium have been recorded as energy distribution curves for eleven different incident wave lengths of monochromatic incident light between wave lengths 405 and 546 mµ. 2. In these spectra chlorophyll fluorescence predominates when the incident light is in the blue part of the spectrum which is strongly absorbed by chlorophyll. 3. For blue-green and green light the spectrum excited in Porphyridium contains in addition to chlorophyll fluorescence, the fluorescence bands characteristic of phycoerythrin and of phycocyanin. 4. From these spectra the approximate curves for the fluorescence of the individual pigments phycoerythrin, phycocyanin, and chlorophyll in the living material have been derived and the relative intensity of each of them has been obtained for each of the eleven incident wave lengths. 5. The effectiveness spectrum for the excitation of the fluorescence of these three pigments in vivo has been plotted. 6. From comparisons of the effectiveness spectrum for the excitation of each of these pigments it appears that both phycocyanin and chlorophyll receive energy from light which is absorbed by phycoerythrin. 7. It is suggested that phycocyanin may be an intermediate in the resonance transfer of energy from phycoerythrin to chlorophyll. 8. Since phycoerythrin and phycocyanin transfer energy to chlorophyll, it appears probable that chlorophyll plays a specific chemical role in photosynthesis in addition to acting as a light absorber.     

Analysis of viability and cell types of macroalgal protoplasts using flow cytometry

The ability to rapidly distinguish viable sub-populations of cells within populations of macroalgal protoplast isolations was demonstrated using flow cytometry. Viable protoplasts from Ulva sp. and Porphyra perforata J. Ag. were distinguished from non-viable protoplasts based on differential fluorescein accumulation. The identities of cortical and epidermal protoplasts from Macrocystis pyrifera (L.) C. Ag. were inferred based on light-scattering and chlorophyll a autofluorescence. Three cell types could be distinguished among protoplasts released from thalli of P. perforata based on chlorophyll a and phycoerythrin autofluorescence. Mixed protoplast populations of Ulva sp. and P. perforata were also discernable based on relative chlorophyll a and phycoerythrin autofluorescence. The ability to screen heterogenous protoplast populations rapidly, combined with the cell sorting capabilities of many flow cytometers, should prove valuable for seaweed biotechnology.     

On-line determination of pigment composition and biomass in cultures of microalgae

Summary Rhodomonas sp. was grown in a photo-bioreactor equipped with a measuring cell in a spectrophotometer as part of an external flow loop. The apparent absorbance from 400 to 800 nm of the cell suspension was recorded at predetermined intervals and stored in a computer. From the spectra, the biomass and the concentrations of the two pigments chlorophyll a and phycoerythrin were determined in nitrogen-limited batch cultures.     

Using phytoplankton and flow cytometry to analyze grazing by marine organisms

Phytoplankton can, through their autofluorescent characteristics, be thought of as tracer particles in much the same way as fluorescent microspheres when used in particle uptake experiments. Flow cytometric techniques can be used to differentiate phytoplankton from other suspended particles by the two primary autofluorescing photosynthetic pigments, chlorophyll and phycoerythrin. Based on these characteristics, phytoplankton assemblages have been used to assess grazing rates, particle selectivity, and endocytotic abilities in various marine species, from single-celled organisms to higher invertebrates.     

Particulate and dissolved organic matter in a small partly forested Ontario stream

Weekly measurements during the open season at five stations on a small Ontario stream system showed that the size distribution of fine particles in the water varied irregularly. In general, rainfall increased their total amount and also the concentration of dissolved organic carbon. Clearly other local factors affect the supply of particles, and each reach behaves individually and may react differently to successive storms. The behaviour of dissolved material is more predictable, and it is clear that much is rapidly removed from solution. It was shown that high concentrations of particles are associated with high amounts of plant pigments, carbohydrate, and protein. Similarly dissolved carbohydrate and protein are raised when rain increases dissolved organic carbon. These findings suggest a series of mechanisms by which a woodland stream may trap woodland produced energy and cycle it through the aquatic system.This work was supported by a research grant from the National Research Council of Canada to H. B. N. Hynes.     

Loss of pico- and nanoplankton cells during concentration by tangential flow filtration

The efficiency of a tangential flow filtration device to concentratepico- and nanoplankton particles in sea water uniformly overa range of concentrations was evaluated. To calculate the expenmentalrecovery rates for each concentration factor, we measured theincrease in chlorophyll concentration, number of total particles(Coulter counter) and number of autotrophic cells (flow cytometry).The experimental recovery rates for each stage of volume reductionin the concentration process were expressed as percentages ofthe expected theoretical values. Significant losses of cellularmaterial (low recovery rates) occurred between the retentateseawater tank and the seawater filtrate tank. Similar lossesoccurred in repetitive closed-circuit recirculation experimentswhen the circulating volume of sea water was kept constant.The cause of the apparent losses of material appeared to bemechanical fragmentation of organisms during the pumping andfiltering stages; however, experiments with latex beads showedthat most of the missing beads were retained within the filtrationelements. The low efficiencies and extremely varied recoveryrates of tangential flow filtrations measured under the experimentalconditions and for the different types of particles used inthis work preclude its use for quantitative concentrations ofnatural assemblages of particulate material in sea water.     

Antagonistic molecular interactions of photosynthetic pigments with molecular disease targets: a new approach to treat AD and ALS

Alzheimer’s disease (AD) and amyotrophic lateral sclerosis (ALS) are progressive neurodegenerative diseases that affect the neurons in the brain and the spinal cord. Neuroinflamation and apoptosis are key players in the progressive damage of the neurons in AD and ALS. Currently, there is no drug to offer complete cure for both these diseases. Riluzole is the only available drug that can prolong the life time of the ALS patients for nearly 3 months. Molecules that offer good HIT to the molecular targets of ALS will help to treat AD and ALS patients. P53 kinase receptor (4AT3), EphA4 (3CKH) and histone deacetylase (3SFF) are the promising disease targets of AD and ALS. This paper discusses on a new approach to combat neurodegenerative diseases using photosynthetic pigments. The docking studies were performed with the Autodock Vina algorithm to predict the binding of the natural pigments such as β carotene, chlorophyll a, chlorophyll b, phycoerythrin and phycocyanin on these targets. The β carotene, phycoerythrin and phycocyanin had higher binding energies indicating the antagonistic activity to the disease targets. These pigments serve as a potential therapeutic molecule to treat neuroinflammation and apoptosis in the AD and ALS patients.     

SPECTRAL LIGHT ABSORPTION BY INTACT BLADES OF PORPHYRA ABBOTTAE (RHODOPHYTA): EFFECTS OF ENVIRONMENTAL FACTORS IN CULTURE1

Whole thallus absorptance spectra were recorded for Porphyra abbottae Krishnamurthy gametophytes grown in batch culture at combinations of temperature (8, 10, 12° C), irradiance (17.5, 70, 140 μmol photons·m^?2·s^?1), nutrients (f/4, f/2, f media) and water motion (0, 50, 100, 150 rpm). Light, nutrients, water motion and the interaction of nutrients with water motion all significance affected broadband (400-700 nm) absorptance and absorptance by phycoerythrin (566 nm), phycocyanin (624 nm) and chlorophyll a (680 nm). Absorptances increased in low light, low water motion and high nutrient levels. Shifts in phycoerythrin: chlorophyll a absorptance ratios closely paralleled changes of absorptance by the major pigments, whereas the phycoerythrin: phycocyanin ratio decreased only with increasing nutrient supply Absorptance ratios were significantly correlated with growth rate. Absorptance increased asymptotically with blade thickness or pigment content. Based on previously determined growth rates, nutrient saturated P. abbottae can synthesize photosynthetic pigments in excess of immediate needs. Allocation is given preferentially to the phycobiliproteins, with highest preference for phycocyanin.     

SINGLE-CELL PIGMENTATION OF PORPHYRA LINEARIS ANALYZED BY FOURIER TRANSFORM MULTI-PIXEL SPECTROSCOPY AND IMAGE ANALYSIS1

The novel method of Fourier transform multi-pixel spectroscopy was used for the nondestructive analysis of and comparison of pigmentation in different regions of live thalli of the red alga Porphyra linearis. Because the thallus in this alga consists of a monolayer of nonoverlapping cells, we were able to analyze the pigmentation of single cells by combining light absorbance with natural fluorescence data. From the image of each cell in the vegetative male and female reproductive and holdfast regions, more than 4 ± 10⁴ fluorescence and absorbance spectra were obtained. Specific pigments in the different regions were localized by the use of a software program of similarity mapping followed by image construction. The reconstructed images revealed subcellular localization of each pigment according to specific spectroscopic fingerprints. The results showed that the vegetative and female reproductive cell types had a significantly higher content of phycoerythrin than of phycocyanin, and quite similar chlorophyll a levels. Most of the holdfast cells were poorly pigmented, but had more chlorophyll a than phycoerythrin or phycocyanin. The male reproductive cells contained only traces of pigments. Thus, by using Fourier transform multipixel spectroscopy, we were able to characterize the pigmentation of different regions of the thallus and follow the distribution patterns of the different pigments on the subcellular level along the differentiation gradient of the alga.     

Pigment production in Spirulina fussiformis in different photophysical conditions

The present investigation makes a comparative investigation of individual light source on the different commercially important pigments in Spirulina fussiformis in photobioreactor culture condition. Continuous culture system was carried out throughout the experimental condition. Initially, seed culture, corresponding to 0.2 g/L on dry weight basis was cultivated in Zarrouks medium with different colored light source in reactor. Maximum daily biomass productivity, 0.8 g/L, 0.75 g/L and 0.69 g/L in white light (WL), blue light (BL) and green light (GL), respectively, conditions was noticed. Pigment content during WL treatment showed the highest accumulation (5.5 microg/mL) of chlorophyll whereas, other pigments roughly remained constant without much change, implying WL intensity is better for chlorophyll synthesis. On the other hand, chlorophyll and phycocyanin content gradually increased up to 7 microg/mL and 2 mg/mL, respectively, at BL intensity. The response to GL was negative to all pigments studied except for phycocyanin; in this case a highest production (2.5 mg/mL) was seen during 18 days experimental period. Additionally, when yellow light (YL) treatment experiments were conducted, the rate of production gradually decreased from 6th day onward in all pigments demonstrating the photobleaching effect of YL. The average rate of pigments production did not show significant accumulation in red light (RL) light treatment except phycoerythrin which showed an increasing trend of production. It is worth to mention here that higher light intensity is better for production of phycocyanin and phycoerythrin in Spirulina.     

EFFECT OF BLUE-GREEN LIGHT ON PHOTOSYNTHETIC PIGMENTS AND CHLOROPLAST STRUCTURE IN UNICELLULAR MARINE ALGAE FROM SIX CLASSES1

The photosynthetic pigments of 17 species of unicellular marine algae grown in white and blue-green light were examined. Blue-green light (400 μW·cm^?2; 12:12 LD cycle) caused major chlorophyll increases (55–146%) in five diatoms, one dinoflagellate and one cryptomonad; minor chlorophyll increases (17–39%) in two diatoms, two dinoflagellates, one prymnesiophyte (haptophyte), one chrysophyte and one chlorophyte; and no chlorophyll increase in two diatoms and one pyrmnesiophyte (haptophyte). The relative proportions of major chlorophylls and carotenoids did not change, but in six of eight species tested small increases in the concentration of chlorophyll c occurred. Blue-green light caused a small increase in the concentration of phycoerythrin relative to chlorophyll a in the cryptomonad. A larger number of thylakoids per chloroplast were observed in six species grown in blue-green light compared to white light controls. The ultrastructure changes observed depended not only on the magnitude of the chlorophyll increase but also on the architecture of the chloroplast.     

Significance of predation by protists in aquatic microbial food webs

Predation in aquatic microbial food webs is dominated by phagotrophic protists, yet these microorganisms are still understudied compared to bacteria and phytoplankton. In pelagic ecosystems, predaceous protists are ubiquitous, range in size from 2 μm flagellates to >100 μm ciliates and dinoflagellates, and exhibit a wide array of feeding strategies. Their trophic states run the gamut from strictly phagotrophic, to mixotrophic: partly autotrophic and partly phagotrophic, to primarily autotrophic but capable of phagotrophy. Protists are a major source of mortality for both heterotrophic and autotrophic bacteria. They compete with herbivorous meso- and macro-zooplankton for all size classes of phytoplankton. Protist grazing may affect the rate of organic sinking flux from the euphotic zone. Protist excretions are an important source of remineralized nutrients, and of colloidal and dissolved trace metals such as iron, in aquatic systems. Work on predation by protists is being facilitated by methodological advances, e.g., molecular genetic analysis of protistan diversity and application of flow cytometry to study population growth and feeding rates. Examples of new research areas are studies of impact of protistan predation on the community structure of prey assemblages and of chemical communication between predator and prey in microbial food webs. This revised version was published online in August 2006 with corrections to the Cover Date.     

Selection and preference of benthic habitat by small and large ammocoetes of the least brook lamprey (<Emphasis Type="Italic">Lampetra aepyptera</Emphasis>)

In this laboratory study, we quantified substrate selection by small (<50 mm) and large (100–150 mm) ammocoetes of the least brook lamprey (Lampetra aepyptera). In aquaria, ammocoetes were given a choice to burrow into six equally-available substrate types: small gravel (2.360–4.750 mm), coarse sand (0.500–1.400 mm), fine sand (0.125–0.500 mm), organic substrate (approximately 70% decomposing leaves/stems and organic sediment particles, and 30% silt and fine sand), an even mixture of silt, clay, and fine sand, and silt/clay (<0.063 mm). Fine sand was selected with a significantly higher probability than any other substrate. Fine sand habitat is limited in many streams, in part owing to geology, but also as a result of channelization and excessive silt/clay sedimentation, which is a conservation concern. Our results indicate that ammocoetes of least brook lampreys are habitat specialists that prefer fine sand habitat. Hence, availability of fine sand habitat may limit distributions and population sizes.     

水分驱动半干旱区河流沉积物/土壤厌氧绳菌群落的空间异质性

【背景】厌氧绳菌纲、目、科及属是海洋沉积物和湿地土壤中优势的微生物类群,但关于特定水分梯度下河流沉积物/土壤厌氧绳菌群落是否存在空间异质性及核心环境驱动力等问题尚不明晰。【目的】阐明蒙古高原半干旱区河流系统水生、湿生、旱生环境梯度下厌氧绳菌群落的空间异质性及环境驱动力,探明干旱胁迫下萎缩型河流湿地复湿过程中厌氧绳菌群落的指示作用。【方法】利用16S rRNA基因高通量测序及相关性和变异权重分析等方法研究河流系统水分梯度下沉积物/土壤厌氧绳菌群落不同种群的组成、丰度、分布及其环境驱动力。【结果】厌氧绳菌群落15个种群主要分布在水生及湿生环境,由水分、氨氮、砂粒及pH正向驱动,由盐度、全氮、全磷、粉粒和黏粒等负向驱动(Uncultured_us15由砂粒和氨氮负向驱动及粉粒和盐度正向驱动除外);9个和6个厌氧绳菌种群分别由总有机碳正向和负向驱动。变异权重分析表明水分、氨氮、盐度、有机碳、pH分别解释了厌氧绳菌群落空间变异的64.8%、8.9%、7.5%、2.2%、1.7%。【结论】蒙古高原半干旱区厌氧绳菌群落存在明显的空间异质性,偏好高水砂、高氨、高pH等水生和湿生环境,不耐受盐度和营养偏高的旱生环境,由水分核心驱动,可能为自养异养混合的游离型氨氧化细菌,是干旱胁迫下萎缩型河流湿地水分恢复过程的重要指示生物。     

Distribution of microorganisms,total biomass,and enzyme activities in different particles of brown soil

A soil sample from the Ap horizon of an arable brown soil was fractionated by wet sieving, and seven size fractions of organic and mineral soil particles were separated. The organic fractions formed only 2.2% of the soil dry mass, but contained 41.5 and 29.12% of the total soil content of carbon and nitrogen, respectively, and thus represented an important reservoir of readily utilizable nutrients. Organic particles also accumulated most of the soil enzyme activities, determined as-glucosidase,-acetylglucosaminidase, and proteinase activity. The highest counts of bacteria, actinomycetes, and fungi per gram of the soil fractions were obtained with the organic particles, but for the most part microorganisms accumulated in the silt-clay fraction. All soil fractions except the coarsest organic particles contained higher counts of oligotrophic bacteria than copiotrophic ones. Microbial counts, ATP contents, and enzyme activities decreased significantly with decrease in size of the organic soil particles, and increased with decrease in size of the mineral soil particles. Thus, the coarse organic particles >5 mm and the silt-clay fraction <0.05 mm represent the sites with the highest concentrations of microorganisms, ATP contents, and enzyme activities in the arable brown soil under test.Visiting Scientist from The University of Tokyo, Department of Agricultural Chemistry, Tokyo 113, Japan.     

An HPLC analysis of the summer phytoplankton assemblage in Lake Baikal

1. The enormous size and spatial heterogeneity of Lake Baikal require rapid methods for large sample sets. We therefore tested the applicability of a novel, high‐performance liquid chromatography (HPLC)‐based, combination of methods for analysing phytoplankton. In July 2001, samples were collected in a transect across the lake at various depths down to 30 m. Phytoplankton (>3 μm) and autotrophic picoplankton (APP) were counted under light and epifluorescence microscopes, respectively. Pigments were analysed with HPLC. 2. The pigment data allowed the contributions of the dominant phytoplankton groups to the total chlorophyll a (Chl a) in the lake to be estimated by multiple linear regression and by the CHEMTAX matrix factorisation program. Three marker pigments, fucoxanthin, lutein and zeaxanthin, were shown to be useful indicators of the abundance and spatial distribution of certain phytoplankton groups. The relative contributions of the various phytoplankton groups to the total Chl a in the lake determined using these marker pigments were similar, but not identical, to those determined by cell counts. 3. Pigment analyses of isolated strains from Lake Baikal and some European lakes confirmed that phycoerythrin‐containing Cyanobacteria with very high amounts of zeaxanthin were responsible for the low Chl a/zeaxanthin ratios of the water samples. A picoplanktonic species of Eustigmatophyceae was isolated from the lake. Its high violaxanthin content, responsible for very low Chl a/violaxanthin ratios of some water samples, can be used to estimate the contribution of this group to total Chl a.     

Spectral fluorescence signatures in the characterization of phytoplankton community composition

Fluorescence spectral signatures from 28 algal cultures aredescribed.The cultures are split into four groups accordingto their accessory pigments. Phycocyanin and phycoerythrin,characteristic pigments of cyanobacteria, form groups I andII. The characteristic pigment found in group III is chlorophyllb (green and rasinophyte algae) and in group IV it is chlorophyllc (diatoms, dinophytes and some other algae).This preliminarycatalogue of spectral signatures was used to characterize fivenatural phytoplankton communities from brackish water environmentsas a comparison with phytoplankton species found in the samples.Accessory pigments such as phycocyanin and phycoerythrin, characterizinggroups I and II, can be used for identification without confusion.Distinguishing between groups III and IV is more complicated,because their accessory pigments do not have their own fluorescence.These groups can be characterized by increased fluorescenceof chlorophyll a induced by energy excited through chlorophyllb and c. The possibilities of applying the spectral fluorescencesignatures approach to the characterization of natural communitiesare discussed.     

141 New Entities in the Order Chaetopeltidales

The effects of tidal elevation, emersion, sun exposure, and season on several antioxidant enzymes (ascorbate peroxidase, glutathione reductase, and catalase), pigments (phycoerythrin, phycocyanin, chlorophyll a and total carotene) and photosynthetic efficiency of photosystem II (Fv/Fm) in Porphyra umbilicalis were evaluated. Plants were collected monthly from sun-exposed and shaded locations in the high, mid, and low intertidal following periods of tidal emersion ranging from 0–6 hours. Glutathione reductase activity was greatly affected by emersion during summer months, while ascorbate peroxidase and catalase activities showed no seasonal patterns. Differences in glutathione reductase and catalase levels occurred between sun-exposed and shaded plants in the high and mid intertidal during summer. At all elevations, photosynthetic pigments showed a strong seasonal trend, with the effect of sun exposure being most apparent during summer. While total carotene increased with emersion during summer months, the combined effects of emersion and season were inconsistent for phycoerythrin, phycocyanin and chl a. Photosynthetic efficiency (Fv/Fm) decreased following emersion in summer and fall. During most months, sun exposed plants had lower Fv/Fm values compared to plants growing in the shade. This study emphasizes the importance of examining the effects of abiotic stresses simultaneously in order to reveal interactive relationships.     

Fire-derived charcoal affects fine root vitality in a post-fire Gmelin larch forest: field evidence

Plant and Soil - Fine roots are only a small part of total ecosystem biomass, but substantially contributing to soil carbon accumulation in boreal forests. Wildfires may influence fine root...     

Some effects of humidity on the light reaction of photosynthesis in the lichens Cladonia impexa and Collema flaccidium

Luminescence and fluorescence were measured at different relative humidities in the lichen Cladonia impexa Harm. Both parameters showed a constant value at relative humidities lower than 80%: thereafter they increased. Low relative humidity was found to decrease energy transfer from chlorophyll b to chlorophyll a. inhibit electron transport, lower electron holding capacity on the reduced side of photosystem two and impair far-red-induced afterglow, reflecting photophosphorylation. In Collema flaccidium Ach. Ach. energy transfer from the accessory pigments phycocyanin and phycoerythrin to chlorophyll a was only possible at high relative humidity. The results are interpreted as due to conformational changes caused by changed water content in the lichen.