中药材分类中的聚类分析

本文应用聚类分析中的系统聚类法与模糊聚类法,对植物药材百合的18个样品进行了聚类．结果不仅两法所得的结论相一致,而且与传统分类的情况相符合．     

复方配伍的摄动模糊聚类方法

利用摄动模糊聚类方法对中药复方桂枝汤的药群进行了分类,结果表明该方法优于传统模糊聚类方法,避免了利用传递闭包求模糊等价矩阵进行分类的失真问题,与中药传统组方原则相吻合。     

复杂生物数据集的聚类数自动确定方法

聚类数目是影响聚类效果的关键参数,通常需要人工确定,对于较难获得这一先验知识的复杂生物数据集,聚类分析会因此受到限制。针对这一问题,文章提出一种自动确定最佳聚类数目的方法,该方法利用体现"类内紧凑类间离散"思想的优化聚类算法来执行主要计算,结合目标函数二阶差分的判定准则,通过聚类算法的自学习来确定最佳聚类数。实验结果显示,该方法能在复杂数据集上自动得到合理的聚类数目。     

逐步聚类法及其应用

本文介绍了一种非等级分类方法——逐步聚类法,并将其应用于翅果油树灌丛的数量分类研究,结果表明：逐步聚类法实现最优分类的目标过程,是依样方组内具有最小的离差平方和。样方组间具有最大的离差平方和为标准,使样方组内具有最大的同质性,样方组间具有最大的异质性,其分类结果与实际情况吻合度较高;其次,逐步聚类法只需计算每个样方到该样方形心的距离,可缩短计算时间和节省计算机内存单元,提高工作效率。 与模糊c—均值聚类和TWINSPAN结果相比,逐步聚类的结果类似于模糊c—均值聚类,即样方组内具有较高的同质性;在不要求分类结果具有明显上下级关系的前提下,逐步聚类结果要优于TWINSPAN。     

一类大气总悬浮颗粒污染状况的系统聚类分析

本文根据世界60个城市的大气中TSP(Total suspended particulate)的含量进行了大气污染程度的系统聚类分析.首先通过动态聚类确定出聚类数目,然后进行系统聚类分析,运用数学软件SPSS进行数据分析,得出相关结论并给出减少大气中TSP含量的防治措施.     

生物序列的聚类分析

通过不同的聚类方式,对公共数据库中生物序列数据进行生物信息的挖掘,以达到在更广泛和更深入的框架中了解它们之间的相互关系的目的。以帕金森病相关基因所对应的mRNA序列为例,使用双序列比对的得分值作为序列之间的距离定义。同时为解决不同聚类分析之间的差异,分别采用模糊聚类和层次聚类两种不同的方法进行聚类分析。并由不同聚类方法得到的一致分类聚类的结果为基因功能分类提供支持,为进一步揭示生物序列所蕴涵的生物学知识和生物学规律提供可参考的依据。     

贵州各动物地理省爬行动物分布聚类探讨

将贵州101种爬行动物在贵州五个动物地理省中有或无分布作为二元状态,用联合系数来表征两动物地理省问爬行类种类组成的相似程度,以类平均法进行聚类。聚类结果表明黔北、黔中、黔南三个动物地理省先聚为一类,再与黔东南的动物地理省聚为一类,最后与黔西动物地理省聚成一类。     

模糊聚类分析法及其在群落聚类分析中的应用

以不同种类蔬菜菜地节肢动物群落作为研究对象,介绍模糊聚类分析法在群落相似性分析中的应用。得到如下的结果：在建立模糊等价关系的基础上,根据不同的需要,当λ取０．８９９时,聚合成３个类群,当λ为０．８５２时,聚合成２个类群。而Ｆ－ＰＦＳ聚类分析法则根据群落在聚类类群之间或其中的散布情况,从所有的聚类结果中,选择最佳的聚类方案。本文材料的最佳的聚类结果为：把群落聚合成２类。类群１包括：菜心、小白菜、奶白菜、芥菜、芥兰、通菜、豇豆、四季豆上的节肢动物群落;类群２包括：藤菜与苋菜上节肢动物群落。     

广东两栖动物地理分布的聚类分析

对广东省49种两栖动物的地理分布进行了聚类研究.将各种两栖动物在各动物地理省分布的有或无作为二元状态,用结合系数来表征每两个动物地理省同两栖动物组成的相似程度,以类平均法进行聚类.聚类结果表明两栖类在广东各动物地理省的分布受地形明显影响.论述了广东省两辆动物地理分布的特点,并对聚类结果与动物地理区划进行了比较.     

河南省两栖动物地理分布的聚类研究

本文对河南省现生１９ 种两栖动物的地理分布进行了聚类研究。将各种两栖动物在各动物地理省分布的有或无作为二元状态, 用联合系数来表征每两个动物地理省间两栖动物组成的相似程度, 以类平均法进行聚类;论述了河南省两栖动物地理分布的特点, 并对聚类结果与动物地理区划进行了比较。     

Échinodermes de l'Ordovicien supérieur (Ashgill) de Sardaigne et d'Algérie

Research on the influence of sea level variations on the benthic faunas have been carried out in the Upper Ordovician of Sardinia. Study of the depositional facies and sequence analysis of the upper part (Lower Ashgill) of the Portixeddu Formation led to the identification of the sedimentary environments. Cystoids and crinoids are associated to bryozoans and brachiopods in most levels. The numerical analysis of associations and megaguilds shows that crinoids and cystoids have a higher frequency in the proximal and median facies of the upper offshore. The columnal association characterized by Conspectocrinus celticus and the coronoid Mespilocystites tregarvanicus has been discovered in the upper part of the formation. This material and complementary samples from Upper Ordovician of Sardinia and Kabylia (Algeria) bring additional data on the systematic and show the wide distribution of this fauna outside of the Ibero-armorican domain. The distribution of this echinoderm association supports a palaeogeographical position of the Ibero-armorican domain and Sardinia within the north gondwanan margin during the Lower Palaeozoic.     

Histoire plio-pléistocène des écosystèmes végétaux de Méditerranée sud-occidentale : apport de l’analyse pollinique de deux sondages en mer d’Alboran

The pollen analysis of sediments of two boreholes located in the northeastern Morocco (Nador 1) and in the southeastern Spain (Andalucia G1) has allowed shedding a new light on the vegetation and climate of the North African littoral plains, the Rif Massif and the Betic Range during the Pliocene. The vegetation around the Alboran Sea was open and xeric during the Zanclean, dominated by herbs including subdesertic elements as Calligonum, Lygeum, Nitraria and Neurada. This type of vegetation indicates a dry and hot climate. The southwestern Mediterranean steppes have therefore a climatic character; they existed before the presence and the heavy pressure of Man on the environment. From the Piacenzian, the development, at Andalucia as well as at Nador, of Artemisia and the appearance of some altitude trees such as Cedrus and Cathaya indicate a vegetation change linked to a climatic change. Modifications in the vegetation observed during the same period in northwestern Mediterranean seem to indicate that the vegetation changes observed at Andalucia and Nador are controlled by the appearance of the first arctic glacial-interglacial cycles. The cedar tree appears at Nador only at the end of the Piacenzian, at time of the first cooling, while it has been found punctually in Messinian and early Pliocene sediments of Habibas in Algeria and in Messinian sediments of the Bou Regreg section at Salé in Morocco. The regular presence of Cedar at Bou Regreg during the Messinian, allows supposing that it was present in the Middle Atlas Mountains and that its development was favoured by colder conditions.     

Nouveautés sur la séquence du Pléistocène final et l’Holocène initial dans le versant méditerranéen de la péninsule Ibérique à travers l’industrie lithique

This paper explores the cultural sequence for the period 12,500–9000 BP in the Mediterranean coast of the Iberian Peninsula. According to the traditional division by Fortea, this period starts with the end of the Upper Magdalenian, followed by two facies: the Microlaminar Epipalaeolithic and the Geometric Epipalaeolithic (Filador type), (related to Sauveterrian facies). The data collected in recent years suggest a change or amendment to this previous proposal, which now would be divided into four phases: Final Upper Magdalenian, Early Epimagdalenian, Recent Epimagdalenian and Microlaminar Sauveterroid. This paper discusses each of these periods examining the evolution of the stone tools and concluding that in the Mediterranean coast of the Iberian Peninsula the Magdalenian tradition continues with little changes until the advent of the Mesolithic.     

Paléolithique supérieur et Mésolithique en Méditerranée : cadre culturel

The origin of the Upper Palaeolithic around the Mediterranean was the result of the local evolution, particularly in the Near East and in the Lower Nile basin, and of the migration from this zone to South-Eastern and Central Europe. The Initial Upper Palaeolithic in the Near East belt was the effect of local evolution from the industries based on Levallois concept to the industries which developed leptolithic blade technologies. This evolution is well registered in multi-layer sites in the Syro-Palestinian belt (Emirian/Ahmarian), which was the starting point of the diffusion of these “transitional” industries in South-Eastern and Central Europe. This diffusion could be identified with the migration of first anatomically Modern Humans. The Early Upper Palaeolithic in Europe — dated to the second half of the Interpleniglacial — was, at least partially, based on these “transitional” industries and manifested by the appearance of the Aurignacian, contrasted with local cultures such as the Uluzzian in Mediterranean Europe. During whole the Interpleniglacial Europe was separated from Northern Africa dominated by local evolution of Middle Palaeolithic (Middle Stone Age) cultures (mostly expressed by the Aterian), and by specific “transitional” industries on the southern Mediterranean coast (Early Dabbian) and in the Lower Nile basin. The Last Glacial Maximum and the corresponding sea level recession opened new possibilities of contacts between the Maghreb and the Iberian Peninsula in both directions (Aterian-Solutrean and Gravettian-Early Iberomaurusian), which are still difficult to be proved before new chronostratigraphic correlations are made. At the same time we register links between south-eastern Europe and western Anatolia; the real border between Near Eastern and European Mediterranean cultural zones was marked, in the Late Glacial, by the Taurus chain. During the Late Glacial the cultural separation between Europe and Africa was particularly marked. Only in the Aegean basin the first sea navigation facilitated contacts which become widespread as late as in the Early Holocene with neolithization trough maritime contacts.     

Foliar sclereids in the Magnoliaceae

The foliar sclereids in 136 species representing 11 of the 12 genera of Magnoliaceae were studied and compared. Sclereids occur in four different cell assemblages within the leaf: diffuse idioblasts, mesophyll, dermal system, and the vein sheath including terminal elements. Tropical members tend to have the most highly sclerified leaves. In species of Manglietia the leaves have sclerified spongy mesophyll and either sclerified epidermis or hypodermis. In Talauma , sclerification affects the vein sheath and terminal cells of veinlets, with a specialized thick marginal vein in the Asian taxa but not in the American ones. Liriodendron and the magnolias native to the north temperate zone have only minimal sclerification, which usually is confined to the vein sheath of the midrib and the main lateral veins, and as idioblastic sclereids in the petiole and the midrib near the base of the blade. The two largest genera Magnolia and Michelia are heterogeneous and include species which vary as to their combinations of sclerified elements among the four possible types.     

A phylogenetic analysis of basal Anseriformes, the fossil Presbyornis, and the interordinal relationships of waterfowl

A phylogenetic analysis of 123 morphological characters of basal waterfowl (Aves: Anseriformes) and other selected avian orders confirmed that the screamers (Anhimae: Anhitn-idae) are the sister-group of other waterfowl (Anseres), and that the magpie goose (Anseranatidae: Anseranas semipalmata) is the sister group of other modern waterfowl exclusive of screamers (Anatidae sensu stricto). The analysis also supports the traditional hypothesis of the gallinaceous birds (Galliformes) as the sister group of the Anseriformes. Presbyornis, a fossil from the early Eocene of Wyoming and averred by Olson & Feduccia as showing that the Anseriformes were derived from shorebirds (Charadriiformes), was found to represent the sister group of the Anatidae. Associated hypotheses by Olson & Feduccia concerning the implications of Presbyornis for the phylogenetic relationships of flamingos (Phoenicopteriformes), the position of the Anhimidae within the waterfowl, relationships among modern Anatidae, and a plausible evolutionary scenario for waterfowl also are rejected. Analyses revealed that cranial characters were critical to the establishment of the Galliformes as the sister group of the Anseriformes; exclusion of the Anhimidae, especially in combination with Anseranas, also undermined the support for this inference. Placement of Presbyornis as the sister group of the Anatidae casts doubt on the role suggested by Feduccia of ‘transitional shorebirds' in the origin of modern avian orders, and calls into question the concept of ‘fossil mosaics’. The phylogenetic hypothesis is used to reconstruct an evolutionary scenario for selected ecomorphological characters in the galliform-anseriform transition, to predict the most parsimonious states of these characters for Presbyornis, and to propose a phylogenetic classification of the higher-order taxa of waterfowl. This re-examination of Presbyornis also is used to exemplify the fundamental methodological shortcomings of the intuitive approach to the reconstruction of phylogenetic relationships.     

Early embryonic development of the mayfly Ephemera japonica McLachlan (Insecta: Ephemeroptera,Ephemeridae)

In the newly laid egg of the mayfly Ephemera japonica, an egg nucleus (oocyte nucleus) at metaphase of the first maturation division is in the polar plasm at the mid-ventral side of the egg, and a male pronucleus lies in the periplasm beneath a micropyle situated just opposite the polar plasm or at the mid-dorsal side of egg. The maturation divisions are typical. An extensive and circuitous migration of the male pronucleus is involved in the fertilization process: it first moves anteriad in the periplasm from beneath the micropyle to the anterior pole of the egg and then turns posteriad in the yolk along the egg's long axis to the site of syngamy, near the center of the egg. Cleavage is superficial. The successive eight cleavages, of which the first five are synchronized, result in the formation of the blastoderm, and about ten primary yolk cells remain behind in the yolk. Even in the newly formed blastoderm, the thick embryonic posterior half and the thin extraembryonic anterior half areas are distinguished: the former cells are concentrated at the posterior pole of the egg to form the germ disc, and the latter cells become more flattened, forming serosa. Time-lapse VTR observations reveal a yolk stream that is in accord with the migration of the male pronucleus in time and direction. The yolk stream is also generated in activated unfertilized eggs, and it is probable that the migration of the male pronucleus in association with the fertilization may be directed by the yolk stream. J. Morphol. 238:327–335, 1998. © 1998 Wiley-Liss, Inc.     

Inception of the Modern Public Health System in China and Perspectives for Effective Control of Emerging Infectious Diseases: In Commemoration of the 140th Anniversary of the Birth of the Plague Fighter Dr. Wu Lien-Teh

In this article, we systematically review Dr. Wu Lien-Teh's academic achievements and outstanding contributions in the prevention and control of the plague epidemic in northeast China and introduce the development of the earliest public health epidemic prevention system in China in order to commemorate the 140th anniversary of Dr. Wu Lien-Teh's birth. We hope that this article will provide insights into the effective prevention and control of emerging infectious diseases as well as the current worldwide pandemic of COVID-19, facilitating the improvement and development of public health systems in China and around the globe.     

Evolutionary expansion of the Monogenea

The evolutionary expansion of the monogeneans has taken place in parallel with the diversification of the fish-like vertebrates. In this article the main trends in monogenean evolution are traced from a hypothetical skin-parasitic ancestor on early vertebrates. Special consideration is given to the following topics: early divergence between skin feeders and blood feeders; diversification and specialization of the haptor for attachment to skin; transfer from host to host, viviparity and the success of the gyrodactylids; predation on skin parasites and camouflage; colonization of the buccal and branchial cavities; diversification and specialization of the haptor for attachment to the gills; phoresy in gill parasites; the development of endoparasitism and the origin of the cestodes; the success of dactylogyroidean gill parasites; the uniqueness of the polyopisthocotyleans; ovoviviparity and the colonization of the tetrapods. Host specificity has been the guiding force of coevolution between monogeneans and their vertebrate hosts, but the establishment of monogeneans on unrelated hosts sharing the same environment (host-switching) may have been underestimated. Host-switching has provided significant opportunities for evolutionary change of direction and is probably responsible for the establishment of monogeneans on cephalopod molluscs, on the hippopotamus and possibly on chelonians. There are indications that host-switching may be more common in monogeneans that spread by direct transfer of adults/juveniles from host to host. A limitation on the further expansion of monogeneans is the need for water for the dispersal of the infective larva (oncomiracidium).     

Transcriptomic Analysis of Human Retinal Surgical Specimens Using jouRNAl

Retinal detachment (RD) describes a separation of the neurosensory retina from the retinal pigmented epithelium (RPE). The RPE is essential for normal function of the light sensitive neurons, the photoreceptors. Detachment of the retina from the RPE creates a physical gap that is filled with extracellular fluid. RD initiates cellular and molecular adverse events that affect both the neurosensory retina and the RPE since the physiological exchange of ions and metabolites is severely perturbed. The consequence for vision is related to the duration of the detachment since a rapid reapposition of the two tissues results in the restoration of vision ¹. The treatment of RD is exclusively surgical. Removal of vitreous gel (vitrectomy) is followed by the removal non essential part of the retina around the detached area to favor retinal detachment. The removed retinal specimens are res nullius (nothing) and consequently normally discarded. To recover RNA from these surgical specimens, we developed the procedure jouRNAl that allows RNA conservation during the transfer from the surgical block to the laboratory. We also standardized a protocol to purify RNA by cesium chloride ultracentrifugation to assure that the purified RNAs are suitable for global gene expression analysis. The quality of the RNA was validated both by RT-PCR and microarray analysis. Analysis of the data shows a simultaneous involvement of inflammation and photoreceptor degeneration during RD.