A taxonomic,functional, and phylogenetic perspective on the community assembly of passerine birds along an elevational gradient in southwest China

Integrating multiple facets of biodiversity to describe spatial and temporal distribution patterns is one way of revealing the mechanisms driving community assembly. We assessed the species, functional, and phylogenetic composition and structure of passerine bird communities along an elevational gradient both in wintering and breeding seasons in the Ailao Mountains, southwest China, in order to identify the dominant ecological processes structuring the communities and how these processes change with elevation and season. Our research confirms that the highest taxonomic diversity, and distinct community composition, was found in the moist evergreen broadleaf forest at high elevation in both seasons. Environmental filtering was the dominant force at high elevations with relatively cold and wet climatic conditions, while the observed value of mean pairwise functional and phylogenetic distances of low elevation was constantly higher than expectation in two seasons, suggested interspecific competition could play the key role at low elevations, perhaps because of relative rich resource result from complex vegetation structure and human‐induced disturbance. Across all elevations, there was a trend of decreasing intensity of environmental filtering whereas increasing interspecific competition from wintering season to breeding season. This was likely due to the increased resource availability but reproduction‐associated competition in the summer months. In general, there is a clear justification for conservation efforts to protect entire elevational gradients in the Ailao Mountains, given the distinct taxonomic, functional, and phylogenetic compositions and also elevational migration pattern in passerine bird communities.     

5. SOME NOTES RESULTING FROM A HOLIDAY TRIP THROUGH EAST GRIQUALAND

The study investigated the bird species diversity associated with vegetation communities found on a single mountain slope in the Usuthu Gorge Community Conservation Area, northern KwaZulu-Natal. Thirteen sample sites were surveyed on a monthly basis for 12 months. Over this period, 279 birds and 55 species were recorded, of which the Dark-capped Bulbul Pycnonotus tricolor was the most abundant. The Rattling Cisticola Cisticola chiniana was the indicator species in the highest community, Open Bushveld, which is characterised by grassland and bush patches. The White-bellied Sunbird Cinnyris talatala was an indicator in the second-lowest community, Dense Bushveld–Woodland, which is characterised by steep slopes and thickets. In Wooded Grassland, located between the above two communities, the highest beta diversity (species turnover) was recorded and this outcome was probably caused by large areas covered by rocks that compelled woodland birds to move through this community. Contrary to expectation, the gamma diversity per vegetation community increased with elevation from 18 to 33 species in Dense Bushveld–Woodland, Wooded Grassland and Open Bushveld. A future study should measure bird species diversity on larger elevational gradients, i.e. slopes from 500 to 3 000 m above sea level, which also include more distinct vegetation communities.     

Bird diversity along elevational gradients in the Andes of Colombia: area and mass effects

Aim The decrease in species richness with increasing elevation is a widely recognized pattern. However, recent work has shown that there is variation in the shape of the curve, such that both negative monotonic or unimodal patterns occur, influenced by a variety of factors at local and regional scales. Discerning the shape of the curve may provide clues to the underlying causes of the observed pattern. At regional scales, the area of the altitudinal belts and mass effects are important determinants of species richness. This paper explores the relationship between bird species richness, elevation, mass effects and area of altitudinal zones for birds in tropical mountains. Location The three Andean ranges of Colombia and the peripheral mountain ranges of La Macarena and Santa Marta. Methods Lists of bird species were compiled for altitudinal belts in eastern and western slopes of the three Andean Cordilleras and for La Macarena and Santa Marta. The area of the altitudinal belts was computed from digital elevation models. The effect of area was analysed by testing for differences among altitudinal belts in the slopes and intercepts of the species‐area relationships. Mass effects were explored by separately analysing two sets of species: broadly distributed species, i.e. lowland species whose distributions extend into the Andes, and tropical Andean species, i.e., species that evolved in the Andes. Results Plotting total number of species in each altitudinal belt revealed a decline in species richness with elevation. In slopes with a complete elevational gradient from lowlands to mountain peaks, the decrease was monotonic. In internal Andean slopes where the lower elevational belts are truncated, there was a peak at mid elevations. There was a linear relationship between number of species and area of the altitudinal belts. When controlling for area, there were no differences in the number of species among altitudinal belts (500–2600 m), except for the two upper‐elevation zones (2600–3200 and > 3200 m), which had lower species richness. Diversity of widely distributed species declined monotonically with elevation, whereas tropical Andean species exhibited a mid‐elevation peak. Main conclusions A large proportion of the variation in species richness with elevation was explained by area of the altitudinal belts. When controlling for area, species richness remained constant up to 2600 m and then decreased. This pattern contrasts with a previously reported hump‐shaped pattern for Andean birds. Diversity patterns of widely distributed species suggested that immigration of lowland species inflates diversity of lower elevational belts through mass effects. This influence was particularly evident in slopes with complete altitudinal gradients (i.e. connected to the lowlands). Tropical Andean species, in contrast, were more diverse in mid‐elevational belts, where speciation rates are expected to be higher. The influence of these species was more prevalent in internal Andean slopes with no connection to the lowlands. The decline of species richness at high elevations may be related to higher extinction rates and lower resource levels.     

渤海中、南部大型底栖动物物种多样性的研究

以1997年 6月、1998年9月和1999年4月共3个航次,覆盖渤海中、南部大部分海区的大型底栖动物丰度、生物量和生产力的研究为基础,进一步对其物种多样性进行了分析。结果表明：研究海域的大型底栖动物物种多样性没有明显的平面分布规律;物种多样性指数与沉积物因子的相关性高于其与底层水因子的相关性;沉积物中污染物含量的确会对大型底栖动物的多样性造成影响。通过对3个航次中3个相同站位的比较,发现不同年份之3个季节的平均Shannon Wiener指数无显著差异（P>0.05）;而1998年9月和1999年4月2个航次中20个相同站位的平均Shannon Wiener指数同样也未表现出明显的差异（P>0.05）。此外,渤海的物种数量要明显地高于胶州湾。     

Aquatic insect β‐diversity is not dependent on elevation in Southern Rocky Mountain streams

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石门台自然保护区蝴蝶特种多样性研究

1999年6月～2003年4月间,对广东石门台自然保护区的蝴蝶进行了调查,共记录到蝴蝶361种,分隶于11科190属。其中中国特有种51 种,占总数的14.1%;国家保护种10种,占我国两次颁布（1989和2000年）的保护物种名录中蝴蝶总数量（83种）的12.0%。通过以人工林生境为主的试验区、次生林生境为主的缓冲区和原生林生境为主的核心区等3个功能区中选择样点进行的蝴蝶多样性分析表明,缓冲区的物种多样性及科、属多样性均较高,且有众多的珍稀物种,是一个重要的蝴蝶生息地,应加强管制。进一步说明了保护蝶类的根本在于护林,进而为保护好广东省目前面积最大的自然保护区——石门台自然保护区的生物多样性及不可多得的自然遗产——热带亚热带低地森林提供依据。此外,本文将科、属多样性与物种多样性综合起来考虑,同时使用Shannon-Wiener指数与G-F指数,较为全面地评价了该保护区蝴蝶的群落多样性。     

A tribute to Claude Shannon (1916–2001) and a plea for more rigorous use of species richness, species diversity and the 'Shannon–Wiener' Index

In the literature, the terms species richness and species diversity are sometimes used interchangeably. We suggest that at the very least, authors should define what they mean by either term. Of the many species diversity indices used in the literature, the Shannon Index is perhaps most commonly used. On some occasions it is called the Shannon–Wiener Index and on other occasions it is called the Shannon–Weaver Index. We suggest an explanation for this dual use of terms and in so doing we offer a tribute to the late Claude Shannon (who passed away on 24 February 2001).     

海南五指山热带山地雨林植物物种多样性研究

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Global analysis of bird elevational diversity

Aim Elevational gradients distributed across the globe are a powerful test system for understanding biodiversity. Here I use a comprehensive set of bird elevational gradients to test the main drivers of diversity, including sampling, area, mid‐domain effect, temperature, temperature and water availability, and hypotheses of evolutionary history. Location Seventy‐eight elevational gradients of bird diversity from mountains in both hemispheres spanning 24.5° S to 48.2° N, including gradients from various climates, biogeographical regions and habitat types. Methods Data on bird elevational diversity were taken from the literature. Of the 150 datasets found or compiled, only those with a high, unbiased sampling effort were used in analyses. Datasets sampled all birds, all breeding birds or all forest birds; a few studies detailed seasonal, elevational shifts. Eighteen predictions of diversity theory were tested, including three sets of interactions. Results Birds display four distinct diversity patterns in nearly equal frequency on mountains: decreasing diversity, low‐elevation plateaus, low‐elevation plateaus with mid‐peaks, and unimodal mid‐elevational peaks. Bird elevational diversity strongly supports current climate as the main driver of diversity, particularly combined trends in temperature and water availability. Bird diversity on humid mountains is either decreasing or shows a low‐elevation plateau in diversity, while on dry mountains it is unimodal or a broad, low‐elevation plateau usually with a mid‐elevation maximum. The predictions of sampling, area and mid‐domain effect were not consistently supported globally. The only evolutionary hypothesis with preliminary support was niche conservatism. Main conclusions Both water and temperature variables are needed to comprehensively predict elevational diversity patterns for birds. This result is consistent for breeding and forest birds, for both hemispheres, and for local‐ or regional‐scale montane gradients. More analyses are needed to discern whether the mechanism underlying these relationships is ecological, based on direct physiological limitations or indirect food resource limitations, or historical, based on phylogenetic niche conservation or other evolutionary trends related to climate. The species–area and mid‐domain effects are not supported as primary drivers of elevational diversity in birds.     

Species turnover in lake littorals: spatial and temporal variation of benthic macroinvertebrate diversity and community composition

Aims Despite wide consensus that ecological patterns and processes should be studied at multiple spatial scales, the temporal component of diversity variation has remained poorly examined. Specifically, rare species may exhibit patterns of diversity variation profoundly different from those of dominant taxa. Location Southern Finland. Methods We used multiplicative partitioning of true diversities (species richness, Shannon diversity) to identify the most important scale(s) of variation of benthic macroinvertebrate communities across several hierarchical scales, from individual samples to multiple littorals, lakes and years. We also assessed the among‐scale variability of benthic macroinvertebrate community composition by using measures of between‐ and within‐group distances at hierarchical scales. Results On average, a single benthic sample contained 23% of the total regional macroinvertebrate species pool. For both species richness and Shannon diversity, beta‐diversity was clearly the major component of regional diversity, with within‐littoral beta‐diversity (β₁) being the largest component of gamma‐diversity. The interannual component of total diversity was small, being almost negligible for Shannon index. Among‐sample (within‐littoral) diversity was related to variation of substratum heterogeneity at the same scale. By contrast, only a small proportion of rare taxa was found in an average benthic sample. Thus, dominant species among lakes and years were about the same, whereas rare species were mostly detected in a few benthic samples in one lake (or year). For rare species, the temporal component of diversity was more important than spatial turnover at most scales. Main conclusions While individual species occurrences and abundances, particularly those of rare taxa, may vary strongly through space and time, patterns of dominance in lake littoral benthic communities are highly predictable. Consequently, many rare species will be missed in temporally restricted samples of lake littorals. In comprehensive biodiversity surveys, interannual sampling of littoral macroinvertebrate communities is therefore needed.     

鸟类迁徙与滨海旅游项目关系——以碧海银沙为例

2018年7月—2019年5月,采用样线法和样点法对启东长江口(北支)自然保护区恒大海上威尼斯碧海银沙海水浴场内鸟类多样性进行了调查,共记录到鸟类9目23科51种,其中鸻形目、雁形目、鹳形目、鸊鷉目等水鸟为鸟类群落的构成主体.不同季节鸟类多样性指数(H)依次为秋季迁徙期＞春季迁徙期＞夏季繁殖期＞越冬期,鸟种由多至少依次...     

Partitioning diversity for conservation analyses

Aim  Differentiation of sites or communities is often measured by partitioning regional or gamma diversity into additive or multiplicative alpha and beta components. The beta component and the ratio of within-group to total diversity (alpha/gamma) are then used to infer the compositional differentiation or similarity of the sites. There is debate about the appropriate measures and partitioning formulas for this purpose. We test the main partitioning methods, using empirical and simulated data, to see if some of these methods lead to false conclusions, and we show how to resolve the problems that we uncover.
Location  South America, Ecuador, Orellana province, Rio Shiripuno.
Methods  We construct sets of real and simulated tropical butterfly communities that can be unambiguously ranked according to their degree of differentiation. We then test whether beta and similarity measures from the different partitioning approaches rank these datasets correctly.
Results  The ratio of within-group diversity to total diversity does not reflect compositional similarity, when the Gini–Simpson index or Shannon entropy are used to measure diversity. Additive beta diversity based on the Gini–Simpson index does not reflect the degree of differentiation between N sites or communities.
Main conclusions  The ratio of within-group to total diversity (alpha/gamma) should not be used to measure the compositional similarity of groups, if diversity is equated with Shannon entropy or the Gini–Simpson index. Conversion of these measures to effective number of species solves these problems. Additive Gini–Simpson beta diversity does not directly reflect the differentiation of N samples or communities. However, when properly transformed onto the unit interval so as to remove the dependence on alpha and N , additive and multiplicative beta measures yield identical normalized measures of relative similarity and differentiation.     

Seasonal variation in understorey bird species diversity and abundance in the Uluguru Nature Reserve,Tanzania

The Uluguru Mountains form a component block of the Eastern Arc Mountains of Tanzania and Kenya and are known for a high degree of endemic vertebrate and plant taxa. Among the Eastern Arc Mountains, the Uluguru Mountains rank second in the number of endemic species. Although the forests in these mountains have received considerable ornithological attention, studies on how forest bird communities in the available low elevation forests are affected by seasons remain patchy and sporadic. Such studies are important because in the Uluguru Mountains, forest destruction in the lower slopes has been severe to an extent that there is very little substantial forest survives below 900 m above sea level. Using mist netting, seasonal variation in understorey bird communities in the remaining low elevation forests in the Uluguru Nature Reserve was assessed between 2005 and 2011. Species diversity and relative abundance of the birds were higher during the cold season in comparison with the hot season possibly due to seasonal elevational movements of some species. Elevational migrants made a large proportion of the avifauna in the study area. The results suggest that low altitude forests are important cold season refugia of elevational migrants and these forests need continual protection.     

Elevation gradients of species-density: historical and prospective views

Studies of elevation clines in diversity and composition of ecological communities date back to the origins of biogeography. A modern resurgence of interests in these elevational clines is likely to contribute important insights for developing a more general theory of species diversity. In order to gain a more comprehensive understanding of geographical clines in diversity, the research programme for montane biogeography should include statistically rigorous tests of apparent patterns, comparisons of patterns among regions and taxonomic or ecological groups of species, and analyses of clines in environmental variables concurrent with biogeographical surveys. The conceptual framework for this research programme should be based on the assumption that elevational gradients in species diversity result from a combination of ecological and evolutionary processes, rather than the presumed independent effects of one overriding force. Given that montane ecosystems are hot spots of biological diversity, an expanded and integrated programme for biogeographic surveys in montane regions should provide valuable insights for conservation biologists.     

A functional perspective for breeding and wintering waterbird communities: temporal trends in species and trait diversity

Waterbird communities are prone to strong temporal changes both seasonally and annually, but little is known about how this affects their functional diversity and community assembly. Detecting temporal trends in taxonomic and functional diversity within (alpha diversity) and between (beta diversity) communities in breeding and wintering seasons could give insight into the ecological processes driving those trends. In this study, we investigated trends in wintering and breeding waterbirds within and between eleven wetlands in Mediterranean Spain, using a 28‐year time‐series up to 2017. We assessed the temporal trends in taxonomic and functional diversity measures, and compared observed functional diversity values with null expectations, in order to explore the mechanisms driving community assembly. We found increases over time in species richness and in the occupied functional space for both wintering and breeding communities, indicating that species with distinct functional roles were added in both seasons. However, the distribution of the abundances in the functional space was different for breeding and wintering communities. Dissimilarity of species and functional traits decreased among wetlands, suggesting that some of the same functional traits were added to the different wetlands, increasing regional homogenization through time. This is reflected in increases over time in mean body mass, diet plasticity and in the importance of fish in waterbird diets, plus declines in the dietary importance of invertebrates and in plasticity of feeding strata. Furthermore, species composition between wintering and breeding communities, but not trait composition, has become more similar through time. Our results highlight that annual changes, and especially seasonal changes, in the composition of waterbird communities have different effects on their functional diversity, and are influenced by opposing community assembly mechanisms.     

Large-scale diversity patterns of vascular epiphytes in Neotropical montane rain forests

Aim Epiphytes contribute up to 30% to the number of vascular plant species in certain global biodiversity hotspots, e.g. the Ecuadorian Andes. However, their large scale diversity patterns are still discussed on the base of results from a few, local epiphyte inventories. Consequently, explanatory models on epiphyte diversity concentrate on the impact of local climate on small scale epiphyte species richness. Our aim was to analyse large scale elevational patterns of epiphyte diversity integrating data from different geographic scales. Location Tropical America, with special emphasis on the Ecuadorian Andes. Methods Our study is based on two data sources. First, we analysed the elevational patterns of epiphyte diversity based on the Catalogue of the Vascular Plants of Ecuador and the Libro Rojo de las Plantas Endèmicas del Ecuador. Secondly, the floristic turnover between the epiphyte inventories of seven montane and four lowland study sites in the Neotropics was analysed. Results The floristic turnover between Neotropical montane epiphyte floras is higher than the one between lowland epiphyte floras. Montane study sites located only a few kilometres apart from each other show considerable differences in their epiphyte species inventories. Irrespectively of their similar dispersal mode, the floristic turnover is much higher for orchids than for Pteridophyta. The Orchidaceae are the species richest group in all of the examined 11 Neotropical epiphyte floras. At the larger scale of the Ecuadorian Flora, c. 50% of the species in the elevational zone with maximum epiphyte diversity (between 1000 and 1500 m) are orchids. Elevational patterns of epiphyte diversity strongly reflect patterns of Orchidaceae. Main conclusions Our results support the observation of a ‘mid‐elevation bulge’ of epiphyte diversity by Gentry and Dodson. It has been frequently shown that the high humidity in mid‐elevations is suitable to maintan a high epiphyte species richness. Our findings show that in addition, large scale epiphyte diversity in montane rain forest is increased by the high floristic turnover at local and regional scale. Based on the importance of Orchidaceae for epiphyte diversity, we discuss that speciation processes corresponding to the highly diverse environment are a driving force for endemism, floristic heterogeneity and consequently for large scale epiphyte species richness in montane forests.     

内蒙古大青山灌木铁线莲根围丛枝菌根真菌群落季节动态研究

采用Illumina MiSeq测序技术研究了内蒙古大青山干旱阳坡灌木铁线莲(Clematis fruticosa)根围丛枝菌根真菌(arbuscular mycorrhizal fungi,AMF)群落的季节动态,并利用冗余分析(redundancy analysis,RDA)和Mantel test分析了土壤和植被因子与AMF之间的关系,为进一步探索灌木铁线莲-AMF共生体对不同季节环境变化的响应提供理论依据。结果表明:(1)灌木铁线莲根围AMF孢子密度不存在显著的季节性差异,根系侵染率和丛枝丰度从春季至秋季呈下降趋势。(2)3个季节共检测出163个AMF OTUs(operational taxonomic units),春季、夏季、秋季分别为116OTUs、76OTUs和70OTUs。(3)夏季和秋季的AMF丰富度(实测OTUs数和Chao1指数)以及多样性(Shannon-Wiener指数和Invsimpson指数)显著低于春季,但夏、秋季间无显著异。(4)主成分分析和PERMANOVA分析表明,夏季和秋季的AMF群落组成与春季存在显著差异,而AMF群落组成在夏季与秋季间差异不显著。(5)RDA分析表明,采样季节、植被盖度、植物多样性、土壤含水量和土壤有机质对AMF ShannonWiener指数、Invsimpson指数、Chao1指数和实测OTUs数均产生显著影响;Mantel test分析发现,采样季节是影响AMF群落组成和菌根侵染率的主导因子,但对孢子密度无显著影响,而土壤有机质是影响孢子密度的主导因子。     

Seasonal Change of Species Diversity Patterns of Non‐volant Small Mammals along Three Subtropical Elevational Gradients

Our understanding of geographic patterns of species diversity and the underlying mechanisms is increasing rapidly, whereas the temporal variation in these patterns remains poorly understood. We examined the seasonal species richness and species turnover patterns of non‐volant small mammals along three subtropical elevational gradients in southwest China. Small mammal diversity was surveyed in two seasons (early wet season and late wet season) using a standardized sampling protocol. The comparison of species richness patterns between two seasons indicated a temporal component in magnitude and shape, with species richness at high elevations clearly increased during the late wet season. Species richness demonstrated weak correlations with modelled temperature and precipitation. The elevational pattern of species turnover measured by Chao‐Sørenson similarity index also changed seasonally, even though the temporal pattern varied with scale. Species turnover between neighboring elevations at high elevations was slower in the late wet season. Meanwhile, there was an acceleration of species turnover along the whole range of the gradient. The seasonal change in species diversity patterns may be due to population‐level increases in abundance and elevational migration, whereas seasonal variation in factors other than temperature and precipitation may play a greater role in driving seasonal diversity patterns. Our study strongly supports the seasonality in elevational patterns of small mammal diversity in subtropical montane forests. Thus it is recommended that subsequent field surveys consider temporal sampling replicate for elevational diversity studies.     

西双版纳勐宋轮歇演替区鸟类多样性及食果鸟研究

结合退耕还林、生态保护和山区经济持续发展的需要,在西双版纳勐宋轮歇休闲自然演替林地、传统保护使林地和原始自然林地等3类8种生境中,采用样方法并辅以挂网捕鸟法,研究了鸟类的多样性、食果鸟类及其与森林动态的关系。结果表明：①随着轮歇休闲时间递增和植被层次增加,鸟类多样性增加,鸟类群落逐渐复杂化;②鸟类多样性H、Hmax和J等参数变化情况在干季和雨季类似;③食果传播植物种子的鸟类沟通了各林地之间的联系,它们的活动对植被的演替和扩展至关重要。讨论分析认为,鸟类多样性与生境植被结构相互作用,协同发展;在退耕还林工作中要重视食果类及其生态功能的作用,注意保护原始森林和鸟类物种,利用和促进食果鸟类的自然生态功能。