Experimental Droughting of Woodsia ilvensis (L.) R. Br.

Summary

Populations of Woodsia ilvensis Oblong Woodsia have been observed to decline at all the British sites. It has been suggested that drought might have accelerated this decline. In an experiment with cultivated Plants it was found that summer drought had a more severe effect than drought during the spring.     

A Simple Method for the Purification of Organelle DNA of Plants

We report here a simple procedure for the purification of the organelle DNA. Mitochondrial DNA from Sorghum and the chloroplast DNA from Populus and spinach were purified using this protocol. The method utilizes a quick centrifugation of the isolated organelle DNA through a two step CsCl density gradient for removal of small molecular weight nucleic acids which pose a major problem for getting clean restriction patterns. This method of purification can be adopted with any isolation procedure for organelle DNA.     

一种在豌豆植物中瞬时表达外源蛋白的新方法

以豌豆植物为实验材料建立了一种瞬时表达外源蛋白的新方法-发芽种子真空侵染法。以绿色荧光蛋白作为报告基因对该体系进行优化的结果表明其最佳工作条件为:菌体工作液浓度OD600=1.0~1.5,真空压力0.08 MPa,真空侵染时间1 min。该方法操作简单,可以同时侵染大量的豌豆植物材料,并将实验周期缩短为15 d,植物侵染后12~14 d可收获外源蛋白,外源蛋白表达量与叶片注射法相当,是一种在豌豆植物中批量生产外源蛋白的新方法。     

A New Method for Mercury Removal

A method is desibed for the removal of mercury from solution by using the off-gas produced from aerobic cultures of Klebsiella pneumoniae M426. Cells growing in Hg-supplemented medium produced a black precipitate containing mercury and sulphur. The ratio of Hg:S was determined as ~1:1 by analysis using proton-induced X-ray emission, suggesting precipitation of HgS within the culture. The outlet gases produced by a mercury-unsupplemented aerated culture were bubbled into an external chamber supplemented with up to 10 mg HgCl₂/ml. A yellowish-white precipitate formed, corresponding to 99% removal of the mercury from solution within 120 min. Energy dispersive X-ray microanalysis showed that this metal precipitate consisted of mercury, carbon and sulphur. Formation of mercury carbonate was discounted since similar precipitation occurred at pH 2 and no oxygen was detected in the solid, which gave an X-ray powder pattern suggesting an amorphous material, with no evidence of HgS. Precipitation of mercury with a volatile organosulphur compound is suggested. Bio-precipitation of heavy metals by using culture off-gas is a useful approach because it can be used with concentrated or physiologically incompatible solutions. Since the metal precipitate is kept separate from the bacterial biomass, it can be managed independently.     

A New Method for Safranin Differentiation

A new method of differentiating safranin in pollen-mother-cell smears and paraffin sections is described in detail. Slides stained in safranin are dehydrated in a series of alcoholic solutions containing 1.5% picric acid with constantly decreasing percentages of water. Differentiation is principally effected in 83% alcohol containing 1.5% picric acid and completed in the final dehydration and clearing. Counterstains may be applied in clove oil if desired.     

A New Method for Synthesizing Acyclonucleosioes

Abstract

We prepared, using a phase transfer catalyst liquid-liquid or solid-liquid, a new series of acyclonucleoside analogues of allopurinol, where the ribose moiety is replaced by (hydroxy-2-ethoxy)-methyl.     

A New Method for the Discovery of Essential Proteins

Background

Experimental methods for the identification of essential proteins are always costly, time-consuming, and laborious. It is a challenging task to find protein essentiality only through experiments. With the development of high throughput technologies, a vast amount of protein-protein interactions are available, which enable the identification of essential proteins from the network level. Many computational methods for such task have been proposed based on the topological properties of protein-protein interaction (PPI) networks. However, the currently available PPI networks for each species are not complete, i.e. false negatives, and very noisy, i.e. high false positives, network topology-based centrality measures are often very sensitive to such noise. Therefore, exploring robust methods for identifying essential proteins would be of great value.

Method

In this paper, a new essential protein discovery method, named CoEWC (Co-Expression Weighted by Clustering coefficient), has been proposed. CoEWC is based on the integration of the topological properties of PPI network and the co-expression of interacting proteins. The aim of CoEWC is to capture the common features of essential proteins in both date hubs and party hubs. The performance of CoEWC is validated based on the PPI network of Saccharomyces cerevisiae. Experimental results show that CoEWC significantly outperforms the classical centrality measures, and that it also outperforms PeC, a newly proposed essential protein discovery method which outperforms 15 other centrality measures on the PPI network of Saccharomyces cerevisiae. Especially, when predicting no more than 500 proteins, even more than 50% improvements are obtained by CoEWC over degree centrality (DC), a better centrality measure for identifying protein essentiality.

Conclusions

We demonstrate that more robust essential protein discovery method can be developed by integrating the topological properties of PPI network and the co-expression of interacting proteins. The proposed centrality measure, CoEWC, is effective for the discovery of essential proteins.     

一种新的EST聚类方法

该研究发展了一种EST（expressed sequence tag）聚类方法（ESTClustering）,用于分析大规模EST测序中所产生的大量数据,以获得高质量,非重复表达序列,该方法在聚类过程中采用MEGABLAST工具对一致序列进行序列同源比较,并用phrap程序对每一EST簇进行拼接检验。这一聚类策略能降低测序错误带来的影响,有效识别基因家族成员,并避免选择性剪接的干扰,与NCB（National Center for Biotechnology Information）的UniGene clustering）方法相比,ESTClustering的聚类结果可以更好地反映表达序列的多样性,用ESTClustering对112256条拟南芥EST聚类测试,产生23581个EST簇,其中13597个EST簇有对应拟南芥基因组编码序列,与该基因组中有EST作为依据的预测基因数目接近。应用该方法对收集的147191条水稻EST序列进行聚类,形成33896个EST簇。     

A New Approach to Understanding the Calcifuge Habit of Plants

Growth rate of the calcifuge plants Carex pilulifera, Deschampsiaflexuosa, Holcus mollis, Luzula pilosa, Nardus stricta, andVeronica officinalis, transplanted into an Ordovician limestonesoil of pH 8, increased by two to three times on addition of5 mol m^-3 of CaHPO₄ compared to untreated conditions. For Galiumsaxatile, however, P treatment was lethal and growth was possibleonly in soil supplied with Fe(III) citrate, which had littleor no effect on growth of the other six species. Phosphate treatmentof the limestone soil greatly increased plant uptake of P, whereasP concentration of shoots from untreated soil was very low andprobably highly deficient, compared to plants of field siteorigin. From this and two other recent studies it is now possibleto conclude that the calcifuge habit of plants, at least underclimatic conditions prevailing in northern Europe, is most oftendue to an inability of such plants to render the native phosphateof limestone soils available to plant uptake. Out of ten calcifugespecies tested, only one exception to this rule was identified.Copyright1994, 1999 Academic Press Carex pilulifera, Deschampsia flexuosa, Galium saxatile, Holcus mollis, Luzula pilosa, Nardus stricta, Veronica officinalis, calcifuge plants, phosphorus, iron, limestone soil, limiting factors     

A New Method for the Preparation of Minicells for Physiological Studies

A procedure has been developed for preparing minicells that does not rely on sucrose gradients in a rate-zone centrifuge. In the presence of low levels (10 units/ml) of penicillin, the contaminating bacteria present in minicell cultures after low-speed differential centrifugation are turned into long filamentous cells and can be killed by sonic treatment. An additional low-speed centrifugation (2, 000 g for 5 min) yields purified minicells with less than one contaminating cell per 10 minicells.     

一种喉部疾病口语声诊断新方法

本文提出了声带的三质量块模型,并应用这模型模拟病噪产生的嘶哑语声,这些嘶声包括有声带闭合不全,声带小结,声带麻痹,喉炎,声带淀粉样变和声门癌等十六种典型情况。采用快速傅里叶变换,线性预测,倒谱技术和离荼余弦变换等分析各类喉病引起的嘶哑语声,实验结果表明声带模型分析法是喉病诊断的一种有效方法。