Ecological characterization of a tropical myxomycete assemblage--Maquipucuna Cloud Forest Reserve, Ecuador

The assemblage of myxomycetes (plasmodial slime molds) associated with cloud forests of the Maquipucuna Cloud Forest Reserve in the western Andes was investigated. Within three study sites located along a gradient extending from 1200 to 2700 m above sea level, a clear pattern of decreasing myxomycete diversity and productivity with elevation was apparent. As such, these data conform to the pattern of "reverse diversity" for myxomycetes in the neotropics, with higher diversity for less mesic forest types than for more mesic forest types. Canonical correspondence analysis of myxomycete abundances in relation to microhabitat parameters revealed three major ecological assemblages: wood-, litter- and inflorescence-inhabiting species. All three assemblages include a number of specialized species, with the assemblage associated with litter being the most diverse and the one associated with inflorescences being the most distinctive. In addition, samples from the microhabitat represented by the cover of epiphyllic liverworts on living leaves regularly produce myxomycetes in moist chamber culture but with few sporocarps and no evidence of any specialized species. At least near ground level, bark-inhabiting (corticolous) myxomycetes are uncommon in the cloud forests sampled in the present study.     

A Bryophyte Flora of Berkshire and Oxfordshire

Abstract

In temperate North American forests, collections were made of myxomycetes (plasmodial slime molds) for which bryophytes served as the primary substrate for fruiting. Most associations among the 52 myxomycete species and 55 bryophyte species, represented in these collections, appeared to be coincidental but two species of myxomycetes (Barbeyella minutissima and Lepidoderma tigrinum) were evidently bryophilous, preferring leafy hepatics on rotten coniferous logs. Bryophytes obviously provide exposed surfaces convenient for myxomycete sporulation. Whether bryophytes also sustain the feeding phases of the myxomycete life-cycle (swarm cells, myxamoebae, and plasmodia) is not yet known.     

Chromosome numbers in representative myxomycetes: a cytogenetic study

Myxomycetes are also called plasmodial slime molds, due to one of their characteristic features, the occurrence of the plasmodium. However, most of the distinguishing characters of the five orders currently recognised are based on the morphology of fruiting bodies and spores. Although a few myxomycetes have become widely used model organisms for genetic and cytological studies, complete information relating to the number of chromosomes in haploid cells (n) is lacking thus far. Only two species of the order Physarales have been examined with respect to chromosome numbers. Here, we present a complete data set on the numbers of chromosomes in ten species of myxomycetes that are members of all five orders. Our analysis indicates that n?=?21 is the evolutionary ancient chromosome number that occurs in the morphologically simple orders Liceales and Ceratiomyxales. More derived taxa, such as the Physarales, have significantly higher chromosome numbers (n?=?30). These data shed light on the phylogenetic relationships within the myxomycetes.     

In the shadow of Darwin: Anton de Bary’s origin of myxomycetology and a molecular phylogeny of the plasmodial slime molds

In his Origin of Species (John Murray, London, 1859), Charles Darwin described the theory of descent with modification by means of natural selection and postulated that all life may have evolved from one or a few simple kinds of organisms. However, Darwin’s concept of evolutionary change is entirely based on observations of populations of animals and plants. He briefly mentioned ‘lower algae’, but ignored amoebae, bacteria and other micro-organisms. In 1859, Anton de Bary, the founder of mycology and plant pathology, published a seminal paper on the biology and taxonomy of the plasmodial slime molds (myxomycetes). These heterotrophic protists are known primarily as a large composite mass, the plasmodium, in which single nuclei are suspended in a common ‘naked’ cytoplasm that is surrounded by a plasma membrane. Here we summarize the contents of de Bary’s 1859 publication and highlight the significance of this scientific classic with respect to the establishment of the kingdom Protoctista (protists such as amoebae), the development of the protoplasmic theory of the cell, the introduction of the concept of symbiosis and the rejection of the dogma of spontaneous generation. We describe the life cycle of the myxomycetes, present new observations on the myxamoebae and propose a higher-order phylogeny based on elongation factor-1 alpha gene sequences. Our results document the congruence between the morphology-based taxonomy of the myxomycetes and molecular data. In addition, we show that free-living amoebae, common protists in the soil, are among the closest living relatives of the myxomycetes and conclude that de Bary’s ‘Amoeba-hypothesis’ on the evolutionary origin of the plasmodial slime molds may have been correct.     

Species-specific cell mobility of bacteria-feeding myxamoebae in plasmodial slime molds

On decaying wood or litter in forests, plasmodial slime molds (myxomycetes) represent a large fraction of eukaryotic protists that feed on bacteria. In his seminal book Experimental Physiology of Plants (1865), Julius Sachs referred to the multinucleate plasmodium of myxomycetes, which were considered at that time as primitive plants (or fungi). Today it is well established that myxomycetes are members of the Amoebozoa (Protista). In this study we compare the mobility of myxamoebae of 3 European species, Lycogala epidendrum (order Liceales), Tubulifera arachnoidea, and Trichia decipiens (order Trichiales). Using agar plates, on which 3 separate bacterial species were cultivated as prey organisms (Methylobacterium mesophilicum, Escherichia coli, Agrobacterium tumefaciens), we document large differences in cell motility between the myxomycetes investigated. In addition, we show that the 3 species of myxamoebae can be distinguished based on their average cell size. These data shed light on the mode of co-occurrence via differential substrate utilization in these members of the Amoebozoa.     

Myxomycete diversity and distribution from the fossil record to the present

The myxomycetes (plasmodial slime molds or myxogastrids) are a group of eukaryotic microorganisms usually present and sometimes abundant in terrestrial ecosystems. Evidence from molecular studies suggests that the myxomycetes have a significant evolutionary history. However, due to the fragile nature of the fruiting body, fossil records of the group are exceedingly rare. Although most myxomycetes are thought to have very large distributional ranges and many species appear to be cosmopolitan or nearly so, results from recent studies have provided evidence that spatial distribution patterns of these organisms can be successfully related to (1) differences in climate and/or vegetation on a global scale and (2) the ecological differences that exist for particular habitats on a local scale. A detailed examination of the global distribution of four examples (Barbeyella minutissima, Ceratiomyxa morchella, Leocarpus fragilis and Protophysarum phloiogenum) demonstrates that these species have recognizable distribution patterns in spite of the theoretical ability of their spores to bridge continents. Special Issue: Protist diversity and geographic distribution. Guest editor: W. Foissner.     

The Response of Litter‐Associated Myxomycetes to Long‐Term Nutrient Addition in a Lowland Tropical Forest

Myxomycetes (plasmodial slime molds) are abundant protist predators that feed on bacteria and other microorganisms, thereby playing important roles in terrestrial nutrient cycling. Despite their significance, little is known about myxomycete communities and the extent to which they are affected by nutrient availability. We studied the influence of long‐term addition of N, P, and K on the myxomycete community in a lowland forest in the Republic of Panama. In a previous study, microbial biomass increased with P but not N or K addition at this site. We hypothesized that myxomycetes would increase in abundance in response to P but that they would not respond to the sole addition of N or K. Moist chamber cultures of leaf litter and small woody debris were used to quantify myxomycete abundance. We generated the largest myxomycete dataset (3,381 records) for any single locality in the tropics comprised by 91 morphospecies. In line with our hypothesis, myxomycete abundance increased in response to P addition but did not respond to N or K. Community composition was unaffected by nutrient treatments. This work represents one of very few large‐scale and long‐term field studies to include a heterotrophic protist highlighting the feasibility and value in doing so.     

Secondary metabolites of slime molds (myxomycetes)

The compounds reported from the slime molds (myxomycetes) species are described. Almost 100 natural compounds including their chemical structures and biological activities are described in this review article. Only metabolites with a well-defined structure are included.     

Protostelids and myxomycetes isolated from aquatic habitats

Protostelids and myxomycetes have been isolated from dead plant parts in many different habitats, including tropical rain forests and deserts. However underwater habitats largely have been overlooked. The purpose of this study was to determine whether protostelids do occur in aquatic habitats and to survey the myxomycetes associated with these habitats. Protostelids and myxomycetes were isolated from substrates collected from just above and just below the surface of the water. Several species of both groups were present, and their distributions above and below the water were different. It is not surprising that the trophic cells of slime molds occur in ponds because they are known to grow in films of water. However these findings are significant because this is the first study to demonstrate clearly the occurrence of protostelids in underwater environments and one of the few surveys of myxomycetes from aquatic systems.     

Studies of Frostfire myxomycetes including a description of a new species of <Emphasis Type="Italic">Diderma</Emphasis>

The moist chamber culture technique was used to investigate the assemblages of myxomycetes (plasmodial slime moulds or myxogastrids) associated with the microhabitats represented by the bark surface of living black spruce (Picea mariana) trees and forest floor leaf litter in the Caribou–Poker Creek Research Watershed located approximately 50 km north of the city of Fairbanks. This study was carried out in the context of a larger project (Frostfire) that involved an experimental burn of a major portion of this watershed. Our study sites consisted of examples of the two major forest types (black spruce and birch–alder–quaking aspen) found within the watershed. Black spruce trees were sampled at three study sites (two burned sites and one control site), whereas samples of litter were obtained from four study sites (two control and two burned). The acidic bark of black spruce was found to support few myxomycetes, and only five species were recorded from a total of 81 moist chamber cultures prepared with samples of bark. The number of species (16) recorded from the 156 moist chamber cultures prepared with litter was appreciably higher. In general, numbers of species and records for litter and bark were fairly comparable in burned sites versus control sites, with the litter microhabitat of the black spruce forest type the major exception. One of the myxomycetes recovered from litter is a species new to science and is described herein as Diderma boreale.     

黏菌化学成分的研究进展

文中回顾及总结了黏菌化学成分的研究进展。迄今为止已从4个目共27种黏菌中分离得到脂肪酸、氨基酸、生物碱、萘醌、芳香族化合物、萜类化合物、酯类化合物及它们的衍生物等近百种化学成分,其中某些成分表现出重要的生物活性。研究表明黏菌不仅已经逐渐成为天然产物的重要研究对象,而且有望成为获得天然活性物质的新资源,这对于黏菌的开发利用具有重要意义。     

Patterns of occurrence of corticolous myxomycetes on white oak trees of two different size classes

Data were obtained on the assemblages of corticolous myxomycetes (plasmodial slime moulds or myxogastrids) associated with the bark surface of living white oak (Quercus alba) trees from two different size classes. Bark samples obtained from larger trees were characterized by higher values for both species richness and diversity when compared to those collected from smaller trees. This might have been expected since the former possess a larger surface area and presumably have persisted over a longer period of time. However, the myxomycete assemblage associated with smaller trees was appreciably different and did not simply represent a depauperate version of the assemblage associated with larger trees. This suggests that the differences observed between size classes cannot be simply attributed to size alone.     

The Life Cycle of Didymium laxifilum and Physarum album on Oat Agar Culture

The plasmodial slime molds is the largest group in the phylum Amoebozoa. Its life cycle includes the plasmodial trophic stage and the spore‐bearing fruiting bodies. However, only a few species have their complete life cycle known in details so far. This study is the first reporting the morphogenesis of Didymium laxifilum and Physarum album. Spores, from field‐collected sporangia, were incubated into hanging drop cultures for viewing germination and axenic oat agar plates for viewing plasmodial development and sporulation. The spores of D. laxifilum and P. album germinated by method of V‐shape split and minute pore, respectively. The amoeboflagellates, released from spores, were observed in water film. The phaneroplasmodia of two species developed into a number of sporangia by subhypothallic type on oat agar culture. The main interspecific difference of morphogenesis was also discussed.     

Slimes in the city: The diversity of myxomycetes from inner-city and semi-urban parks in Sydney,Australia

Natural and agricultural areas are rapidly becoming urbanised, causing changes in habitat structure and diversity. Although the effect of urbanisation on the diversity of terrestrial plants and animals has been well studied, there is a significant gap in our understanding of how urbanisation impacts diversity in protists. Here, we measure the diversity of plasmodial slime moulds (a group of large, macroscopic protists also known as myxomycetes) in inner-city and semi-urban parks. We studied the impact of a range of environmental characteristics (pH, temperature, canopy cover, area of green space and substrate type) on species richness and composition of myxomycetes. We also examined the influence of different degrees of urban development surrounding these parks. Species composition was significantly different between substrate types but not between inner-city and semi-urban parks. Temperature was the only environmental characteristic that affected diversity, having a negative effect on myxomycete presence. Our findings suggest that myxomycete diversity in urban parks is driven by factors at the substrate level, and not by the park's location within the city (inner city or semi-urban).     

Screening for beta-poly(L-malate) binding proteins by affinity chromatography

Poly(beta-L-malic acid) is a cell type-specific polymer of myxomycetes (true slime molds) with the physiological role to organize mobility of certain proteins over the giant multinucleated plasmodia. We have developed an affinity chromatography employing 1,6-diamino-n-hexane-Sepharose-coupled poly(malic acid) to identify such proteins in cellular extracts of Physarum polycephalum. Molecular masses were measured by SDS-PAGE and non-denaturing PAGE after silver staining and/or Western blotting. Protein complexes/subunits were detected by 2-dimensional non-denaturing PAGE/SDS-PAGE. A simplified gel shift experiment displayed binding to fragmented calf thymus DNA. Nuclei were richest in poly(malate) binding proteins followed by cytoplasm and membranes. A protein of 370 kDa dissociated into 11 subunits of 11-29 kDa, indicative of a highly complex protein. This and other proteins displayed binding to nucleic acid in gel shift experiments. Poly(malate) is considered a structural and functional equivalent of long contiguous aspartate repeats in proteins of eukaryotes.     

大头网柄菌的个体发育

【背景】网柄细胞状黏菌是生物学、细胞学及发生生物学研究中一类重要的模式生物,至今已报道了百余种,但每个种的个体发育过程不是很明晰。【目的】了解网柄细胞状黏菌的个体发育。【方法】对采自云南苍山的土壤样品进行网柄菌的分离、培养和鉴定,并详细记录其个体发育全阶段特征。在传统形态学方法基础上,对样品进行基因组18S测序,并将获得序列在GenBank注册。通过双凹载玻片及水琼脂培养基添加大肠杆菌的培养方法,显微观察样品的发育过程,包括孢子、黏变形体、集群、假原质团、拔顶、孢堆果的发育特征。【结果】分离得到大头网柄菌Dictyostelium macrocephalum;该种温度适应范围较广,是亚热带和热带的广布种;其完成一个生活循环历时3 d,接种20 h后孢子开始萌发释放黏变形体,第50 h形成集群,第56 h假原质团形成,第58 h孢堆原形成,第71 h孢堆果完全成熟。【结论】研究分离的大头网柄菌为云南省新记录种,增加了其在我国亚热带的新分布区;明确了该种的个体发育过程。     

Obligatory group I introns with unusual features at positions 1949 and 2449 in nuclear LSU rDNA of Didymiaceae myxomycetes

Myxomycetes (plasmodial slime molds) belonging to the order Physarales contain obligatory group I introns at positions 1949 and 2449 in their large subunit ribosomal RNA gene. Here, we report 36 group I introns from the Didymiaceae family (order Physarales) from 18 isolates representing three genera and seven species, and have reconstructed both host and intron phylogenies. The introns, named L1949 and L2449, were found in all isolates analyzed, consistent with an obligatory distribution in Didymiaceae. The introns fold at the RNA-level into typical group I ribozyme core structures that are relatively conserved, but contain large and highly variable extension sequences in peripheral domains without any detectable protein coding capacities. Furthermore, the L1949 and L2449 introns have probably become dependent on host factors for folding or activity. This assumption is based on that all introns tested for self-splicing in vitro failed to ligate the flanking exon regions. Phylogenies based on LSU rDNA and intron sequences are consistent with that the L1949 and L2449 introns follow a strict vertical inheritance within Didymiaceae. We suggest that the Didymiaceae L1949 and L2449 introns are well suited as high-resolution markers in genetic assessments at various taxonomic levels, from closely related strains of a single species to separating genera.     

Ground-feeding migratory songbirds as cellular slime mold distribution vectors

Cosmopolitan species of cellular slime molds occur continents apart in both tropical and temperate zones of the world though the spore masses are too heavy to be wind borne, and water dispersal is limited to the watercourses. A highly mobile distribution vector was found in ground-feeding migratory song birds. Nine ubiquitous species and 2 ecologicially distinct species of dictyostelid cellular slime molds were isolated from the feces of ground-feeding eastern North American migratory thrushes, finches, sparrows and warblers, both on breeding and winter grounds. Three propagules of slime molds, amoebae, spores and macrocysts survive passage through the avian digesive tract and remain in the gut long enough to be transported by major bird migrations. Habitats with the greates species diversity of both cellular slime molds and ground-feeding passerines concur in both eastern North America and Central America. Birds actively seek their prefered habitats; the cellular slime molds have arrived at these habitats as passengers. Rare slime molds can serve as a marker to the habitats that migratory birds have visited, or birds with known habitats can provide clues as to the distribution of rare species of cellular slime molds.