不饱和土壤CH4的吸收与氧化

不饱和土壤是已知唯一的 CH4 生物壑。综述了不饱和土壤 CH4 的吸收、氧化过程及其影响因素。不饱和土壤中 CH4 氧化的临界浓度低 ,因而甲烷氧化菌可氧化大气 CH4 并将其当作唯一的碳源和能源。土壤 CH4 吸收率与土壤湿度通常呈负相关关系。土壤湿度过高 ,大气 CH4 和 O2 向土壤中扩散受阻 ;或土壤湿度过低引起水分胁迫均导致甲烷氧化菌活性下降。NH 4对土壤中 CH4 氧化的抑制作用可归结为 NH3和 CH4 在甲烷单氧酶水平上的竞争、由氧化作用向硝化作用的转移以及 NH 4氧化生成的 NO- 2 的毒性。NH 4对 CH4 氧化的抑制作用与土壤有效氮含量成正比。各类氮肥对 CH4 氧化抑制作用 :化肥 >有机肥 ;铵态氮肥 >尿素。 NO- 3对 CH4 氧化没有抑制效应。阳离子代换量 (CEC)高的土壤 NH 4对 CH4 氧化的抑制作用轻。 CH4 氧化菌对大气 CH4 的高亲和力及 CH4 氧化所需较低的活化能导致其温度系数 Q1 0 较小。地温较低时 ,土壤氧化 CH4 的能力随温度升高而升高。当地温高于 CH4 氧化的最佳温度时 ,CH4 氧化菌难以与硝化细菌及其它微生物竞争利用土壤空气中的 O2 ,导致其活性降低。甲烷氧化菌对 p H值变化不敏感。团粒结构较好的壤土可保护 CH4 氧化菌免受干扰。未受干扰的森林土壤 CH4 氧化率的峰值一般出现在亚表     

CO2浓度增加对长白山森林土壤甲烷氧化影响

大气CO2浓度升高可能对森林土壤的甲烷(CH4)氧化速率产生影响.本文采用开顶箱技术,对连续6年高浓度CO2(500 μmol·mol-1)处理的长白山森林典型树种蒙古栎树下土壤CH4氧化速率进行研究,并利用CH4氧化菌的16S rRNA特异性引物以及CH4单加氧酶功能基因引物分析了土壤中CH4氧化菌的群落结构与数量.结果表明:CO2浓度增高后,生长季土壤甲烷氧化量与对照和裸地相比分别降低了4％和22％;基于16S rRNA特异性引物的DGGE分析表明,CO2浓度增高导致两类甲烷氧化菌的多样性指数降低;CO2浓度增高对土壤中Ⅰ类甲烷氧化菌数量无显著影响,而使土壤中Ⅱ类甲烷氧化菌数量显著减少,功能基因pmoA拷贝数与对照和裸地相比分别降低了15％和46％.CO2浓度增高导致森林土壤甲烷氧化菌数量与活性降低,土壤含水量的增加可能是导致这一现象的主要原因.     

CO2浓度增加对长白山森林土壤甲烷氧化影响

大气CO2浓度升高可能对森林土壤的甲烷(CH4)氧化速率产生影响.本文采用开顶箱技术,对连续6年高浓度CO2（500 μmol·mol-1）处理的长白山森林典型树种蒙古栎树下土壤CH4氧化速率进行研究,并利用CH4氧化菌的16S rRNA特异性引物以及CH4单加氧酶功能基因引物分析了土壤中CH4氧化菌的群落结构与数量.结果表明： CO2浓度增高后,生长季土壤甲烷氧化量与对照和裸地相比分别降低了4%和22%;基于16S rRNA特异性引物的DGGE分析表明,CO2浓度增高导致两类甲烷氧化菌的多样性指数降低;CO2浓度增高对土壤中Ⅰ类甲烷氧化菌数量无显著影响,而使土壤中Ⅱ类甲烷氧化菌数量显著减少,功能基因pmoA拷贝数与对照和裸地相比分别降低了15%和46%.CO2浓度增高导致森林土壤甲烷氧化菌数量与活性降低,土壤含水量的增加可能是导致这一现象的主要原因.     

水稻土中CH4氧化的研究

在实验室条件下研究了水稻土中CH4氧化的特性 .结果表明 ,在早稻种植前采集的水稻土不能氧化大气中的CH4,但当所供给的CH4浓度 >1 0 μl·L- 1 时 ,能迅速氧化CH4,所供给的CH4浓度越高 ,氧化CH4的速度越大 .经高浓度 ( >1 0 0 0 μl·L- 1 )的CH4预培养 1 0d ,可使本来不具有氧化大气CH4能力的土壤氧化大气CH4.大田CH4排放通量高的水稻土 ,氧化CH4的能力较大 .     

大气氮沉降对森林土壤甲烷吸收和氧化亚氮排放的影响及其微生物学机制

水分非饱和的森林土壤是大气甲烷(CH4)汇和氧化亚氮(N2O)源,大气氮沉降增加是导致森林土壤碳氮气体通量不平衡的主要原因之一。土壤CH4吸收和N2O排放之间存在协同、消长和随机等复杂的耦合关系,关于氮素对两者产生过程的调节作用以及内在的微生物学机制至今尚不完全清楚。综述了森林土壤CH4吸收和N2O排放耦合过程的理论基础,土壤CH4和N2O的产生与消耗过程对增氮响应的生物化学和微生物学机制,指出各研究领域的不足和未来的研究重点。总体而言,低氮倾向于促进贫氮森林土壤CH4吸收,不改变土壤N2O的排放,而高氮显著抑制富氮森林土壤CH4吸收以及促进N2O排放。外源性氮素通过竞争抑制和毒性抑制来调控森林土壤CH4的吸收,而通过促进土壤硝化和反硝化过程来增加N2O的排放。然而,由于全球氮沉降控制试验网络分布的不均匀性、土壤碳氮通量产生过程的复杂性以及微生物分子生态学方法的局限性等原因,导致氮素对森林土壤碳氮通量的调控机制研究一直进展缓慢,未能将微生物功能群落动态与土壤碳氮通量真正地联系起来。未来研究应该从流域、生态系统和分子尺度上深入探讨土壤碳氮通量耦合作用的环境驱动机制,氮素对土壤CH4氧化和N2O产生过程的调控作用,以及增氮对土壤甲烷氧化菌和N2O产生菌活性和群落组成的影响。     

植物建植对垃圾填埋场生物覆盖层甲烷氧化及其微生物群落的影响

利用柱试验模拟填埋场生物覆盖层,研究了白三叶和苜蓿建植对增强覆盖层甲烷(CH4)氧化能力及保持甲烷氧化优势菌群的影响。结果表明:植物建植能明显降低基质含水率,提高氮含量,改善O2和CH4扩散,提高基质CH4氧化能力;在CH4氧化的高速期和下降期,植物建植的CH4氧化速率显著高于对照,白三叶和苜蓿处理之间无显著差异;在CH4氧化的低速期,对照与植物建植之间的CH4氧化速率无显著差异,而苜蓿处理显著高于白三叶处理。基于磷脂脂肪酸(PLFA)的微生物群落结构分析表明,植物建植有利于Ⅰ型菌在深层的分布,随着CH4氧化速率逐渐下降,柱体底部甲烷氧化细菌群落由Ⅰ型为主向Ⅱ型为主转变。     

长白山阔叶红松林不同深度土壤CH4氧化研究

采集长白山阔叶红松林下不同深度的暗棕色森林土壤,在实验室条件下测定其对高低浓度CH4的氧化。结果表明,土壤氧化CH4的能力随深度变化明显;5～15cm土层具有最大CH4氧化活性,在400ppmv CH4浓度下此土层土壤最大氧化速率可达3．3nmolCH4·h^-1·g^-1 dw;25cm以下土层基本没有CH4氧化活性;因0～5cm土层土壤含有高浓度NH4^+抑制了CH4氧化菌的活性,所以此层土壤对CH4吸收能力下降。     

温度对甲烷产生和氧化的影响

综述了温度对土壤产甲烷和氧化甲烷的影响及其机制．温度主要通过土壤中产甲烷菌的优势菌发生更替来改变土壤的产甲烷能力．较高温条件下产甲烷菌以乙酸和H2／CO2都能利用的甲烷八叠球菌(Methanosarcinaceae)为主,使得土壤处于较高的产甲烷状态．较低温条件下产甲烷菌以只能利用乙酸的甲烷毛菌(Methanosaetaceae)为主,土壤形成甲烷的能力相对较弱．温度提高可以显著地增加甲烷的产生,Q10为1．5-28,平均4．1,但是温度效应明显受控于底物浓度,提高底物浓度降低了产甲烷菌对底物的亲和力,相应地增加了度效应,因此在较低温条件下提高底物浓度可以促进甲烷的产生．温度对大气甲烷氧化的影响弱于产甲烷,甲烷氧化菌较少受温度变化的影响,即便在较低温条件下,土壤也具有一定的氧化大气甲烷能力,原因尚不清楚,可能与甲烷氧化菌对大气甲烷具有较高的亲和力有关,有待进一步研究．     

下辽河平原典型农田融化期氧化亚氮和甲烷排放通量研究

应用静态箱／气相色谱法对下辽河平原典型农田（大豆地、玉米地、水稻田）土壤融化期N2O和CH4排放通量进行了研究。结果表明,在融化期间,3种农田N20排放量均较大,这段时期的农田是大气N2O的一个重要源;3种农田CH4排放不明显,成为大气CH4的汇。在融化期间,农田N2O排放量,旱田CH4排放量与箱内温度间均无显著相关性。而水稻田CH4排放量与箱内温度呈显著负相关,相对于生长季来说,这是土壤融化期间的特定现象。     

长期不同施肥下水稻土甲烷氧化能力及甲烷氧化菌多样性的变化

稻田内源甲烷的氧化是稻田甲烷减排的重要途径。而甲烷氧化菌是土壤中甲烷氧化的主要施动者,在长期不同施肥条件下,土壤微生物群落的演变是否影响到土壤甲烷氧化菌群落结构及其活性,进而影响到田土壤CH4向大气的实际排放强度还不清楚。为此,选择太湖地区一个长期肥料试验的稻田土壤为研究对象,分析长期不同肥料施用对土壤甲烷氧化能力的影响及其与土壤中甲烷氧化菌群落结构变化的可能关系。结果表明,长期不同的施肥措施下稻田土壤对甲烷的氧化能力产生了明显差异,伴随着土壤中甲烷氧化菌（MOBI和MOBII）的基因群落多样性的显著变化。长期单一施用氮肥为主的化肥显著降低了土壤对甲烷的氧化能力,同时显著降低了稻田土壤甲烷氧化菌的多样性和丰富度;不同施肥下甲烷氧化菌多样性的变化与土壤的甲烷氧化能力的变化趋势相一致。因此,研究显示长期不同施肥处理下甲烷氧化菌群落结构的改变可能是引起水稻土甲烷氧化能力变化的一个主要因素,有机无机配合施用可以明显降低稻田土壤甲烷的大气释放潜能。但长期不同施肥处理下甲烷氧化菌活性的变化还有待于进一步研究。     

The biogeochemical controls of N2O production and emission in landfill cover soils: the role of methanotrophs in the nitrogen cycle

Emissions of N2O from cover soils of both abandoned (> 30 years) and active landfills greatly exceed the maximum fluxes previously reported for tropical soils, suggesting high microbial activities for N2O production. Low soil matrix potentials (<-0.7 MPa) indicate that nitrification was the most likely mechanism of N2O formation during most of the time of sampling. Soil moisture had a strong influence on N2O emissions. The production of N2O was stimulated by as much as 20 times during laboratory incubations, when moisture was increased from -2.0 MPa to -0.6 MPa. Additional evidence from incubation experiments and delta13C analyses of fatty acids (18:1) diagnostic of methanotrophs suggests that N2O is formed in these soils by nitrification via methanotrophic bacteria. In a NH3(g)-amended landfill soil, the rate of N2O production was significantly increased when incubated with 100 ppmv methane compared with 1.8 ppmv (atmospheric) methane. Preincubation of a landfill soil with 1% CH4 for 2 weeks resulted in higher rates of N2O production when subsequently amended with NH3(g) relative to a control soil preincubated without CH4. At one location, at the soil depth (9-16 cm) of maximum methane consumption and N2O production, we observe elevated concentrations of organic carbon and nitrogen and distinct minima in delta15N (+1.0%) and delta13C (-33.8%) values for organic nitrogen and organic carbon respectively. A delta13C value of -39.3% was measured for 18:1 carbon fatty acids in this soil, diagnostic of type II methanotrophs. The low delta15N value for organic nitrogen is consistent with N2 fixation by type II methanotrophs. These observations all point to a methanotrophic origin for the organic matter at this depth. The results of this study corroborate previous reports of methanotrophic nitrification and N2O formation in aqueous and soil environments and suggest a predominance of type II rather than type I or type X methanotrophs in this landfill soil.     

Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane

Forest and other upland soils are important sinks for atmospheric CH(4), consuming 20 to 60 Tg of CH(4) per year. Consumption of atmospheric CH(4) by soil is a microbiological process. However, little is known about the methanotrophic bacterial community in forest soils. We measured vertical profiles of atmospheric CH(4) oxidation rates in a German forest soil and characterized the methanotrophic populations by PCR and denaturing gradient gel electrophoresis (DGGE) with primer sets targeting the pmoA gene, coding for the alpha subunit of the particulate methane monooxygenase, and the small-subunit rRNA gene (SSU rDNA) of all life. The forest soil was a sink for atmospheric CH(4) in situ and in vitro at all times. In winter, atmospheric CH(4) was oxidized in a well-defined subsurface soil layer (6 to 14 cm deep), whereas in summer, the complete soil core was active (0 cm to 26 cm deep). The content of total extractable DNA was about 10-fold higher in summer than in winter. It decreased with soil depth (0 to 28 cm deep) from about 40 to 1 microg DNA per g (dry weight) of soil. The PCR product concentration of SSU rDNA of all life was constant both in winter and in summer. However, the PCR product concentration of pmoA changed with depth and season. pmoA was detected only in soil layers with active CH(4) oxidation, i.e., 6 to 16 cm deep in winter and throughout the soil core in summer. The same methanotrophic populations were present in winter and summer. Layers with high CH(4) consumption rates also exhibited more bands of pmoA in DGGE, indicating that high CH(4) oxidation activity was positively correlated with the number of methanotrophic populations present. The pmoA sequences derived from excised DGGE bands were only distantly related to those of known methanotrophs, indicating the existence of unknown methanotrophs involved in atmospheric CH(4) consumption.     

Effects of soil moisture content and temperature on methane uptake by grasslands on sandy soils

Aerobic grasslands may consume significant amounts of atmospheric methane (CH4). We aimed (i) to assess the spatial and temporal variability of net CH4 fluxes from grasslands on aerobic sandy soils, and (ii) to explain the variability in net CH4 fluxes by differences in soil moisture content and temperature. Net CH4 fluxes were measured with vented closed flux chambers at two sites with low N input on sandy soils in the Netherlands: (i) Wolfheze, a heather grassland, and (ii) Bovenbuurtse Weilanden, a grassland which is mown twice a year. Spatial variability of net CH4 fluxes was analysed using geostatistics. In incubation experiments, the effects of soil moisture content and temperature on CH4 uptake capacity were assessed. Temporal variability of net CH4 fluxes at Wolfheze was related to differences in soil temperature (r2 of 0.57) and soil moisture content (r2 of 0.73). Atmospheric CH4 uptake was highest at high soil temperatures and intermediate soil moisture contents. Spatial variability of net CH4 fluxes was high, both at Wolfheze and at Bovenbuurtse Weilanden. Incubation experiments showed that, at soil moisture contents lower than 5% (w/w), CH4 uptake was completely inhibited, probably due to physiological water stress of methanotrophs. At soil moisture contents higher than 50% (w/w), CH4 uptake was greatly reduced, probably due to the slow down of diffusive CH4 and O2 transport in the soil, which may have resulted in reduced CH4 oxidation and possibly some CH4 production. Optimum soil moisture contents for CH4 uptake were in the range of 20 – 35% (w/w), as prevailing in the field. The sensitivity of CH4 uptake to soil moisture content may result in short-term variability of net atmospheric CH4 uptake in response to precipitation and evapotranspiration, as well as in long-term variability due to changing precipitation patterns as a result of climate change.     

Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO).

Production and consumption processes in soils contribute to the global cycles of many trace gases (CH4, CO, OCS, H2, N2O, and NO) that are relevant for atmospheric chemistry and climate. Soil microbial processes contribute substantially to the budgets of atmospheric trace gases. The flux of trace gases between soil and atmosphere is usually the result of simultaneously operating production and consumption processes in soil: The relevant processes are not yet proven with absolute certainty, but the following are likely for trace gas consumption: H2 oxidation by abiontic soil enzymes; CO cooxidation by the ammonium monooxygenase of nitrifying bacteria; CH4 oxidation by unknown methanotrophic bacteria that utilize CH4 for growth; OCS hydrolysis by bacteria containing carbonic anhydrase; N2O reduction to N2 by denitrifying bacteria; NO consumption by either reduction to N2O in denitrifiers or oxidation to nitrate in heterotrophic bacteria. Wetland soils, in contrast to upland soils are generally anoxic and thus support the production of trace gases (H2, CO, CH4, N2O, and NO) by anaerobic bacteria such as fermenters, methanogens, acetogens, sulfate reducers, and denitrifiers. Methane is the dominant gaseous product of anaerobic degradation of organic matter and is released into the atmosphere, whereas the other trace gases are only intermediates, which are mostly cycled within the anoxic habitat. A significant percentage of the produced methane is oxidized by methanotrophic bacteria at anoxic-oxic interfaces such as the soil surface and the root surface of aquatic plants that serve as conduits for O2 transport into and CH4 transport out of the wetland soils. The dominant production processes in upland soils are different from those in wetland soils and include H2 production by biological N2 fixation, CO production by chemical decomposition of soil organic matter, and NO and N2O production by nitrification and denitrification. The processes responsible for CH4 production in upland soils are completely unclear, as are the OCS production processes in general. A problem for future research is the attribution of trace gas metabolic processes not only to functional groups of microorganisms but also to particular taxa. Thus, it is completely unclear how important microbial diversity is for the control of trace gas flux at the ecosystem level. However, different microbial communities may be part of the reason for differences in trace gas metabolism, e.g., effects of nitrogen fertilizers on CH4 uptake by soil; decrease of CH4 production with decreasing temperature; or different rates and modes of NO and N2O production in different soils and under different conditions.     

Effects of O2 and CH4 on presence and activity of the indigenous methanotrophic community in rice field soil

The activity and distribution of methanotrophs in soil depend on the availability of CH4 and O2. Therefore, we investigated the activity and structure of the methanotrophic community in rice field soil under four factorial combinations of high and low CH4 and O2 concentrations. The methanotrophic population structure was resolved by denaturant gradient gel electrophoresis (DGGE) with different PCR primer sets targeting the 16S rRNA gene, and two functional genes coding for key enzymes in methanotrophs, i.e. the particulate methane monooxygenase (pmoA) and the methanol dehydrogenase (mxaF). Changes in the biomass of type I and II methanotrophic bacteria in the rice soil were determined by analysis of phospholipid-ester-linked fatty acid (PLFA) biomarkers. The relative contribution of type I and II methanotrophs to the measured methane oxidation activity was determined by labelling of soil samples with 14CH4 followed by analysis of [14C]-PLFAs. CH4 oxidation was repressed by high O2 (20.5%), and enhanced by low O2 (1%). Depending on the CH4 and O2 mixing ratios, different methanotrophic communities developed with a higher diversity at low than at high CH4 concentration as revealed by PCR-DGGE. However, a prevalence of type I or II populations was not detected. The [14C]-PLFA fingerprints, on the other hand, revealed that CH4 oxidation activity was dominated by type I methanotrophs in incubations with low CH4 mixing ratios (1000 p.p.m.v.) and during initiation of CH4 consumption regardless of O2 or CH4 mixing ratio. At high methane mixing ratios (10 000 p.p.m.v.), type I and II methanotrophs contributed equally to the measured CH4 metabolism. Collectively, type I methanotrophs responded fast and with pronounced shifts in population structure and dominated the activity under all four gas mixtures. Type II methanotrophs, on the other hand, although apparently more abundant, always present and showing a largely stable population structure, became active later and contributed to CH4 oxidation activity mainly under high CH4 mixing ratios.     

Butachlor inhibits production and oxidation of methane in tropical rice soils under flooded condition

In laboratory incubation experiments, application of a commercial formulation of the herbicide butachlor (N-butoxymethyl-2-chloro-2',6'-diethyl acetanilide) to three tropical rice soils, widely differing in their physicochemical characteristics, under flooded condition inhibited methane (CH4) production. The inhibitory effect was concentration dependent and most remarkable in the alluvial soil. Thus, following application of butachlor at 5, 10, 50 and 100 microg g(-1) soil, respectively, cumulative CH4 production in the alluvial soil was inhibited by 15%, 31%, 91% and 98% over unamended control. Since CH4 production was less pronounced in the sandy loam and acid sulfate soil, the impact of amendment with butchalor, albeit inhibitory, was less extensive than the alluvial soil. Inhibition of CH4 production in butachlor-amended alluvial soil was related to the prevention in the drop in redox potential as well as low methanogenic bacterial population especially at high concentrations of butachlor. CH4 oxidation was also inhibited in butachlor-amended alluvial soil with the inhibitory effect being more prevalent under flooded condition. Inhibition in CH4 oxidation was related to a reduction in the population of soluble methane monooxygenase producing methanotrophs. Results demonstrate that butachlor, a commonly used herbicide in rice cultivation, even at very low concentrations can affect CH4 production and its oxidation, thereby influencing the biogeochemical cycle of CH4 in flooded rice soils.     

Radioactive fingerprinting of microorganisms that oxidize atmospheric methane in different soils.

Microorganisms that oxidize atmospheric methane in soils were characterized by radioactive labelling with (14)CH(4) followed by analysis of radiolabelled phospholipid ester-linked fatty acids ((14)C-PLFAs). The radioactive fingerprinting technique was used to compare active methanotrophs in soil samples from Greenland, Denmark, the United States, and Brazil. The (14)C-PLFA fingerprints indicated that closely related methanotrophic bacteria were responsible for the oxidation of atmospheric methane in the soils. Significant amounts of labelled PLFAs produced by the unknown soil methanotrophs coeluted with a group of fatty acids that included i17:0, a17:0, and 17:1omega8c (up to 9.0% of the total (14)C-PLFAs). These PLFAs are not known to be significant constituents of methanotrophic bacteria. The major PLFAs of the soil methanotrophs (73.5 to 89.0% of the total PLFAs) coeluted with 18:1 and 18:0 fatty acids (e.g., 18:1omega9, 18:1omega7, and 18:0). The (14)C-PLFAs fingerprints of the soil methanotrophs that oxidized atmospheric methane did not change after long-term methane enrichment at 170 ppm CH(4). The (14)C-PLFA fingerprints of the soil methanotrophs were different from the PLFA profiles of type I and type II methanotrophic bacteria described previously. Some similarity at the PLFA level was observed between the unknown soil methanotrophs and the PLFA phenotype of the type II methanotrophs. Methanotrophs in Arctic, temperate, and tropical regions assimilated between 20 and 54% of the atmospheric methane that was metabolized. The lowest relative assimilation (percent) was observed for methanotrophs in agricultural soil, whereas the highest assimilation was observed for methanotrophs in rain forest soil. The results suggest that methanotrophs with relatively high carbon conversion efficiencies and very similar PLFA compositions dominate atmospheric methane metabolism in different soils. The characteristics of the methane metabolism and the (14)C-PLFA fingerprints excluded any significant role of autotrophic ammonia oxidizers in the metabolism of atmospheric methane.     

Vertical distribution of the methanotrophic community after drainage of rice field soil

Anoxic soils, such as flooded rice fields, are major sources of the greenhouse gas CH(4) while oxic upland soils are major sinks of atmospheric CH(4). Nevertheless, CH(4) is also consumed in rice fields where up to 90% of the produced CH(4) is oxidized in a narrow oxic zone around the rice roots and in the soil surface layer before it escapes into the atmosphere. After 1 day drainage of rice field soil, CH(4) oxidation was detected in the top 2-mm soil layers, but after 8 days drainage the zone of CH(4) oxidation extended to 8 mm depth. Simultaneously, the potential for CH(4) production decreased, but some production was still detectable after 8 days drainage throughout the soil profile. The vertical distribution of the methanotrophic community was also monitored after 1 and 8 days drainage using denaturing gradient gel electrophoresis after PCR amplification with primer sets targeting two regions on the 16S rRNA gene that are relatively specific for methylotrophic alpha- and gamma-Proteobacteria, and targeting two functional genes encoding subunits of key enzymes in all methanotrophs, i.e. the genes for the particulate methane monooxygenase (pmoA) and the methanol dehydrogenase (mxaF). Drainage stimulated the methanotrophic community. Eight days after drainage, new methanotrophic populations appeared and a distinct methanotrophic community developed. The population structure of type I and II methanotrophs was differently affected by drainage. Type II methanotrophs (alpha-Proteobacteria) were present throughout the soil core directly after drainage (1 day), and the community composition remained largely unchanged with depth. Only two new type II populations appeared after 8 days of drainage. Drainage had a more pronounced impact on the type I methanotrophic community (gamma-Proteobacteria). Type I populations were not or only weakly detected 1 day after drainage. However, after 8 days of drainage, a large diversity of type I methanotrophs were detected, altough they were not evenly distributed throughout the soil core but dominated at different depths. A distinct type I community structure had developed within each soil section between 0 and 20 mm soil depth, indicating the widening of suitable habitats for methanotrophs in the rice field soil within 1 week of drainage.     

Diversity of the particulate methane monooxygenase gene in methanotrophic samples from different rice field soils in China and the Philippines

Methanotrophic bacteria play a crucial role in regulating the emission of CH4 from rice fields into the atmosphere. We investigated the CH4 oxidation activity together with the diversity of methanotrophic bacteria in ten rice field soils from different geographic locations. Upon incubation of aerated soil slurries under 7% CH4, rates of CH4 oxidation increased after a lag phase of 1-4 days and reached values of 3-10 micromol d(-1) g-dw(-1) soil. The methanotrophic community was assayed by retrieval of the pmoA gene which encodes the a subunit of the particulate methane monooxygenase. After extraction of DNA from actively CH4-oxidizing soil samples and PCR-amplification of the pmoA, the community was analyzed by Denaturant Gradient Gel Electrophoresis (DGGE) and Terminal Restriction Fragment Length Polymorphism (T-RFLP). DGGE bands were excised, the pmoA re-amplified, sequenced and the encoded amino acid sequence comparatively analyzed by phylogenetic treeing. The analyses allowed the detection of pmoA sequences related to the following methanotrophic genera: the type-I methanotrophs Methylobacter, Methylomicrobium, Methylococcus and Methylocaldum, and the type-II methanotrophs Methylocystis and Methylosinus. T-RFLP analysis detected a similar diversity, but type-II pmoA more frequently than DGGE. All soils but one contained type-II in addition to type-I methanotrophs. Type-I Methylomonas was not detected at all. Different combinations of methanotrophic genera were detected in the different soils. However, there was no obvious geographic pattern of the distribution of methanotrophs.