Status and developmental prospects of microbiology

The achievements of microbiology in the field of chemistry studying, molecular biology and cellular structure of bacteria are reflected in this review. The peculiarities of energetic, synthetic processes in prokaryotes and also the different methods of regulation of their metabolism have been shown. The achievements in the field of new strains construction and creation of biocatalysts on the basis of immobilized cells and enzymes for the biotechnological purposes have been elucidated. The role of microbiology in solving such social problems as the purification of environment from pollution, replenishing the resources of energy and protein which are rapidly exhausted has been shown.     

Developing higher resolution climate change scenarios for agricultural risk assessment: progress,challenges and prospects

Climate change presents perhaps the greatest economic and environmental challenge we have ever faced. Climate change and its associated impacts, adaptation and vulnerability have become the focus of current policy, business and research. This paper provides invaluable information for those interested in climate change and its impacts. This paper comprehensively reviews the advances made in the development of regional climate change scenarios and their application in agricultural impact, adaptation and vulnerability assessment. Construction of regional climate change scenarios evolved from the application of arbitrary scenarios to the application of scenarios based on general circulation models (GCMs). GCM-based climate change scenarios progressed from equilibrium climate change scenarios to transient climate change scenarios; from the use of direct GCM outputs to the use of downscaled GCM outputs; from the use of single scenarios to the use of probabilistic climate change scenarios; and from the application of mean climate change scenarios to the application of integrated climate change scenarios considering changes in both mean climate and climate variability.     

Status, problems and prospects of stock enhancement in Taiwan

Stock enhancement started in Taiwan with the building and casting of artificial reefs in 1973. It was only in late 1987, however, that an integrated program on the operation and establishment of a stock enhancement system was developed. In addition to building artificial reefs and establishing resource protection zones to create fishing grounds, the current stock enhancement program in Taiwan aims at restocking broodstock and fry or seeds. So far, seven species of finfish, four species of mollusks, and six species of crustaceans have been restocked. A total of 5.8 million finfish fry, 5 million molluskan seeds, and 30 million crustacean larvae with some eel and prawn broodstocks have been released up to 1996. Although there are plans to establish sea-farming centers in Taiwan, the organization of the system has not been established completely. Furthermore, regulations on resource augmentation, protection and management of coastal fisheries and stock enhancement are absent or lacking. The success of stock enhancement depends on the pollution control that is in place in coastal areas and the fishermen‘s awareness of the importance of resource conservation and their involvement. The paper discusses the status,problems and prospects of stock enhancement in Taiwan, with some viewpoints in population genetics. It also refers to some experience in Japanese sea-farming. This revised version was published online in August 2006 with corrections to the Cover Date.     

Extrapolation from in vitro tests to human risk: experience with sodium fluoride clastogenicity

Genotoxic effects observed in vitro, only at high doses or high levels of cytotoxicity, will be false positives if such conditions are not achieved or cannot be tolerated in vivo. However, for such effects to be disregarded there must be a threshold dose or level of cytotoxicity below which genotoxicity is absent. Sodium fluoride (NaF) has previously been shown to be clastogenic in vitro in Syrian hamster cells and human fibroblasts. We have extended these studies in human fibroblasts and included a positive control (mitomycin C, MMC) which is clastogenic in vivo and carcinogenic, and a chemically related control (NaCl). Cytotoxicity was measured as mitotic inhibition and cell death (loss of clonogenicity). The results are used to illustrate the problems associated with quantitative extrapolation from in vitro tests to human risk, as follows. (1) There appears to be a threshold response (clastogenicity vs. dose) with NaF at around 10 micrograms/ml (48 h exposure) but a more definitive conclusion must await elucidation of the mechanisms of clastogenicity. (2) NaCl is weakly clastogenic at 1000 times the threshold dose for NaF. The mechanisms are unlikely to be similar. (3) No clastogenicity was detected with NaF below about 30% mitotic inhibition but the relationship between clastogenicity and mitotic inhibition was similar for NaF and MMC. (4) There was no obvious threshold in the relationship between clastogenicity and cell killing with NaF. MMC was less clastogenic than NaF at equitotoxic doses. Observations 3 and 4 preclude the possibility of regarding the clastogenicity of NaF as a false positive by virtue of associated cytotoxicity.     

Strategy for genotoxicity testing: hazard identification and risk assessment in relation to in vitro testing

This report summarizes the proceedings of the September 9-10, 2005 meeting of the Expert Working Group on Hazard Identification and Risk Assessment in Relation to In Vitro Testing, part of an initiative on genetic toxicology. The objective of the Working Group was to develop recommendations for interpretation of results from tests commonly included in regulatory genetic toxicology test batteries, and to propose an appropriate strategy for follow-up testing when positive in vitro results were obtained in these assays. The Group noted the high frequency of positive in vitro findings in the genotoxicity test batteries with agents found not to be carcinogenic and thought not to pose a carcinogenic health hazard to humans. The Group agreed that a set of consensus principles for appropriate interpretation and follow-up testing when initial in vitro tests are positive was needed. Current differences in emphasis and policy among different regulatory agencies were recognized as a basis of this need. Using a consensus process among a balanced group of recognized international authorities from industry, government, and academia, it was agreed that a strategy based on these principles should include guidance on: (1) interpretation of initial results in the "core" test battery; (2) criteria for determining when follow-up testing is needed; (3) criteria for selecting appropriate follow-up tests; (4) definition of when the evidence is sufficient to define the mode of action and the relevance to human exposure; and (5) definition of approaches to evaluate the degree of health risk under conditions of exposure of the species of concern (generally the human). A framework for addressing these issues was discussed, and a general "decision tree" was developed that included criteria for assessing the need for further testing, selecting appropriate follow-up tests, and determining a sufficient weight of evidence to attribute a level of risk and stop testing. The discussion included case studies based on actual test results that illustrated common situations encountered, and consensus opinions were developed based on group analysis of these cases. The Working Group defined circumstances in which the pattern and magnitude of positive results was such that there was very low or no concern (e.g., non-reproducible or marginal responses), and no further testing would be needed. This included a discussion of the importance of the use of historical control data. The criteria for determining when follow-up testing is needed included factors, such as evidence of reproducibility, level of cytotoxicity at which an increased DNA damage or mutation frequency is observed, relationship of results to the historical control range of values, and total weight of evidence across assays. When the initial battery is negative, further testing might be required based on information from the published literature, structure activity considerations, or the potential for significant human metabolites not generated in the test systems. Additional testing might also be needed retrospectively when increase in tumors or evidence of pre-neoplastic change is seen. When follow-up testing is needed, it should be based on knowledge about the mode of action, based on reports in the literature or learned from the nature of the responses observed in the initial tests. The initial findings, and available information about the biochemical and pharmacological nature of the agent, are generally sufficient to conclude that the responses observed are consistent with certain molecular mechanisms and inconsistent with others. Follow-up tests should be sensitive to the types of genetic damage known to be capable of inducing the response observed initially. It was recognized that genotoxic events might arise from processes other than direct reactivity with DNA, that these mechanisms may have a non-linear, or threshold, dose-response relationship, and that in such cases it may be possible to determine an exposure level below which there is negligible concern about an effect due to human exposures. When a test result is clearly positive, consideration of relevance to human health includes whether other assays for the same endpoint support the results observed, whether the mode or mechanism of action is relevant to the human, and - most importantly - whether the effect observed is likely to occur in vivo at concentrations expected as a result of human exposure. Although general principles were agreed upon, time did not permit the development of recommendations for the selection of specific tests beyond those commonly employed in initial test batteries.     

Analytical strategies for shotgun phosphoproteomics: Status and prospects

New analytical strategies for phosphoproteomics, both experimental and computational, have been rapidly introduced in recent years, leading to novel biological findings on the role of protein phosphorylation, which have in turn stimulated further development of the analytical techniques. In this review, we describe the development of analytical strategies for LC–MS/MS-based phosphoproteomics, focusing particularly on recent progress in phosphopeptide enrichment, LC–MS/MS measurement and the subsequent computational analysis. High-coverage analysis of the phosphoproteome has largely been achieved by combining pre-fractionation methods with multiple phosphopeptide enrichment approaches, at some cost in LC–MS/MS measurement time and increased sample loss. Key points for the future will be to further increase the selectivity and the recovery of enrichment methods to achieve higher sensitivity and efficiency in LC–MS/MS analysis in order to detect protein phosphorylation comprehensively, including low-abundance proteins. This is expected to lead to a more detailed understanding of the mechanisms and interactions of phosphorylation-mediated regulatory pathways in biological systems.     

Animation of in vitro biomechanical tests.

Interdisciplinary communication of three-dimensional kinematic data arising from in vitro biomechanical tests is challenging. Complex kinematic representations such as the helical axes of motion (HAM) add to the challenge. The difficulty increases further when other quantities (i.e. load or tissue strain data) are combined with the kinematic data. The objectives of this study were to develop a method to graphically replay and animate in vitro biomechanical tests including HAM data. This will allow intuitive interpretation of kinematic and other data independent of the viewer's area of expertise. The value of this method was verified with a biomechanical test investigating load-sharing of the cervical spine. Three 3.0 mm aluminium spheres were glued to each of the two vertebrae from a C2-3 segment of a human cervical spine. Before the biomechanical tests, CT scans were made of the specimen (slice thickness=1.0 mm and slice spacing=1.5 mm). The specimens were subjected to right axial torsion moments (2.0 Nm). Strain rosettes mounted to the anterior surface of the C3 vertebral body and bilaterally beneath the facet joints on C3 were used to estimate the force flow through the specimen. The locations of the aluminium spheres were digitised using a space pointer and the motion analysis system. Kinematics were measured using an optoelectronic motion analysis system. HAMs were calculated to describe the specimen kinematics. The digitised aluminium sphere locations were used to match the CT and biomechanical test data (RMS errors between the CT and experimental points were less than 1.0 mm). The biomechanical tests were "replayed" by animating reconstructed CT models in accordance with the recorded experimental kinematics, using custom software. The animated test replays allowed intuitive analysis of the kinematic data in relation to the strain data. This technique improves the ability of experts from disparate backgrounds to interpret and discuss this type of biomechanical data.     

中国海洋渔业水域环境研究现状及展望

渔业水域环境是水生生物赖以生存、繁衍的最基本条件,优良的渔业水域环境是海洋渔业持续发展的物质载体与必然条件。近年来中国海洋渔业水域环境状况日趋严峻,依据海洋渔业水域监测数据,分析了中国海洋渔业水域环境的现状;概括了中国海洋渔业水域环境面临的主要问题及破坏原因;综述了海洋渔业水域环境保护及修复对策的研究现状,并对今后的研究工作提出了方向与内容上的展望。     

Practical applications of in vitro propagation: Present situation and future prospects

Abstract

This article surveys the techniques and approaches used in the in vitro propagation of economically important plants. The current state of the art for each major class of plants, namely ornamentals, vegetable and agronomic crops, temperate fruits and forest trees is described. The advantages of vegetative propagation in general and the specific advantages which micropropagation offers in the domestication, breeding and conservation of plants are listed. Specific problems associated with in vitro propagation such as juvenility vs maturation, vitrification, rooting and morphological or physiological variations are discussed.     

Framework for validation and implementation of in vitro toxicity tests

Summary The development and application of in vitro alternatives designed to reduce or replace the use of animals, or to lessen the distress and discomfort of laboratory animals, is a rapidly developing trend in toxicology. However, at present there is no formal administrative process to organize, coordinate, or evaluate validation activities. A framework capable of fostering the validation of new methods is essential for the effective transfer of new technologic developments from the research laboratory into practical use. This committee has identified four essential validation resources: chemical bank(s), cell and tissue banks, a data bank, and reference laboratories. The creation of a Scientific Advisory Board composed of experts in the various aspects and endpoints of toxicity testing, and representing the academic, industrial, and regulatory communities, is recommended. Test validation acceptance is contingent on broad buy-in by disparate groups in the scientific community—academics, industry, and government. This is best achieved by early and frequent communication among parties and agreement on common goals. It is hoped that the creation of a validation infrastructure composed of the elements described in this report will facilitate scientific acceptance and utilization of alternative methodologies and speed implementation of replacement, reduction, and refinement alternatives in toxicity testing.     

Involvement of hydrogen peroxide in chromosomal aberrations induced by green tea catechins in vitro and implications for risk assessment

Catechins, which are polyphenol compounds found in abundance in green tea, have elicited high interest due to their beneficial effects on health. Catechins have also been demonstrated to induce chromosomal aberrations in vitro, although no clastogenicity was confirmed in studies in vivo. We investigated the mechanism of catechin-induced chromosomal aberrations in CHL/IU cells. Addition of catalase suppressed chromosomal aberrations, indicating involvement of hydrogen peroxide (H2O2). We confirmed that substantial amounts of H2O2 are generated when catechins are incubated under in vitro culture conditions, whereas, interestingly, extremely low amounts of H2O2 were detected when catechins were incubated at the same concentration in water. Generation of H2O2 increased steeply above pH 6, indicating that pH is a key factor in determining how much H2O2 is generated via catechins in vitro. Our assessment indicates that humans have practically non-existent exposure to H2O2 when catechins are ingested in a beverage. Polyphenols, including catechins, are known to act as antioxidants due to their reducing potential. However, under in vitro culture conditions, catechins are thought to act primarily as pro-oxidants by reducing ambient or dissolved oxygen to form H2O2. Based on the above observations, we conclude that in vitro culture conditions as currently employed are inappropriate to address genotoxicity concerns regarding polyphenols, including catechins.     

Empirical tests of reciprocity theory: Problems in assessment

Observations and experiments designed to test Trivers' (1971) theory of reciprocal altruism face two difficulties. First, in many cases the costs and benefits of behaviors being exchanged cannot be expressed directly in terms of effects on the actors' fitness. This is particularly true when an exchange of cooperative acts involves different types of behavior, such as grooming and alliance formation in non-human primates. Second, in many social groups individuals differ widely in their ability to confer benefits on others. High-ranking animals can, for example, offer greater assistance than low-ranking animals and adults can help offspring more than offspring can help adults. As a result, what appears not to be a reciprocal interaction from the observer's point of view may in fact support Trivers' theory when costs and benefits are calculated from the animals' own perspectives. We discuss these issues with special reference to our own experiments on reciprocal exchanges of grooming and alliance formation in free-ranging vervet monkeys.